RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 METTL24Q5JXM2 366 aa12.94□□□□□ -0.34
SCN1A-222ENST00000642141 C15orf52Q6ZUT6 534 aaKnown RBP12.94□□□□□ -0.34
SCN1A-222ENST00000642141 FZD1Q9UP38 647 aa12.94□□□□□ -0.34
SCN1A-222ENST00000642141 RIPOR2Q9Y4F9 1068 aa12.94□□□□□ -0.34
SCN1A-222ENST00000642141 ZNF609O15014 1411 aa12.94□□□□□ -0.34
SCN1A-222ENST00000642141 PITPNM2Q9BZ72 1349 aa12.93□□□□□ -0.34
SCN1A-222ENST00000642141 PSME4Q14997 1843 aa12.93□□□□□ -0.34
SCN1A-222ENST00000642141 CLRN2A0PK11 232 aa12.93□□□□□ -0.34
SCN1A-222ENST00000642141 HIBADHP31937 336 aaKnown RBP12.93□□□□□ -0.34
SCN1A-222ENST00000642141 RBM5P52756 815 aaKnown RBP eCLIP12.93□□□□□ -0.34
SCN1A-222ENST00000642141 BRPF1P55201 1214 aaPredicted RBP12.93□□□□□ -0.34
SCN1A-222ENST00000642141 RABL6Q3YEC7 729 aaPredicted RBP12.93□□□□□ -0.34
SCN1A-222ENST00000642141 MIER1Q8N108 512 aa12.93□□□□□ -0.34
SCN1A-222ENST00000642141 CCDC102AQ96A19 550 aa12.93□□□□□ -0.34
SCN1A-222ENST00000642141 FAM84BQ96KN1 310 aaPredicted RBP12.93□□□□□ -0.34
SCN1A-222ENST00000642141 AOX1Q06278 1338 aa12.92□□□□□ -0.34
SCN1A-222ENST00000642141 MKRN3Q13064 507 aaKnown RBP12.92□□□□□ -0.34
SCN1A-222ENST00000642141 CHAF1AQ13111 956 aaPredicted RBP12.92□□□□□ -0.34
SCN1A-222ENST00000642141 UBE4AQ14139 1066 aa12.92□□□□□ -0.34
SCN1A-222ENST00000642141 CFAP100Q494V2 611 aa12.92□□□□□ -0.34
SCN1A-222ENST00000642141 MROH5Q6ZUA9 1318 aa12.91□□□□□ -0.34
SCN1A-222ENST00000642141 FRAT2O75474 233 aaPredicted RBP12.91□□□□□ -0.34
SCN1A-222ENST00000642141 VPS37DQ86XT2 251 aa12.91□□□□□ -0.34
SCN1A-222ENST00000642141 TDRD7Q8NHU6 1098 aaKnown RBP12.91□□□□□ -0.34
SCN1A-222ENST00000642141 ZBED3Q96IU2 234 aaPredicted RBP12.91□□□□□ -0.34
SCN1A-222ENST00000642141 PRMT6Q96LA8 375 aaPredicted RBP12.91□□□□□ -0.34
SCN1A-222ENST00000642141 VEZTQ9HBM0 779 aa12.91□□□□□ -0.34
SCN1A-222ENST00000642141 ZNF646O15015 1829 aaPredicted RBP12.9□□□□□ -0.34
SCN1A-222ENST00000642141 TRPA1O75762 1119 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 SLC10A3P09131 477 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 UBTFL1P0CB47 393 aaPredicted RBP12.9□□□□□ -0.34
SCN1A-222ENST00000642141 BCAMP50895 628 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 RARSP54136 660 aaKnown RBP12.9□□□□□ -0.34
SCN1A-222ENST00000642141 GRIK5Q16478 980 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 MFSD14BQ5SR56 506 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 RASAL3Q86YV0 1011 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 PIAS4Q8N2W9 510 aaPredicted RBP12.9□□□□□ -0.34
SCN1A-222ENST00000642141 CSRNP1Q96S65 589 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 SIL1Q9H173 461 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 DEFB129Q9H1M3 183 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 THSD7BQ9C0I4 1608 aa12.9□□□□□ -0.34
SCN1A-222ENST00000642141 SPDYE2BA6NHP3 402 aa12.89□□□□□ -0.35
SCN1A-222ENST00000642141 PDE8BO95263 885 aa12.89□□□□□ -0.35
SCN1A-222ENST00000642141 SPDYE6P0CI01 402 aa12.89□□□□□ -0.35
SCN1A-222ENST00000642141 NF2P35240 595 aa12.89□□□□□ -0.35
SCN1A-222ENST00000642141 FBXO33Q7Z6M2 555 aa12.89□□□□□ -0.35
SCN1A-222ENST00000642141 APOBEC3FQ8IUX4 373 aaKnown RBP12.89□□□□□ -0.35
SCN1A-222ENST00000642141 RNF186Q9NXI6 227 aa12.89□□□□□ -0.35
SCN1A-222ENST00000642141 TTF2Q9UNY4 1162 aaKnown RBP12.89□□□□□ -0.35
SCN1A-222ENST00000642141 LRRFIP2Q9Y608 721 aaKnown RBP12.89□□□□□ -0.35
SCN1A-222ENST00000642141 A0A1B0GUL6 1792 aa12.89□□□□□ -0.35
SCN1A-222ENST00000642141 CA12O43570 354 aa12.88□□□□□ -0.35
SCN1A-222ENST00000642141 RFX5P48382 616 aaPredicted RBP12.88□□□□□ -0.35
SCN1A-222ENST00000642141 FKBP1BP68106 108 aa12.88□□□□□ -0.35
SCN1A-222ENST00000642141 PTPN12Q05209 780 aaKnown RBP12.88□□□□□ -0.35
SCN1A-222ENST00000642141 CAVIN4Q5BKX8 364 aa12.88□□□□□ -0.35
SCN1A-222ENST00000642141 DIEXFQ68CQ4 756 aaKnown RBP12.88□□□□□ -0.35
SCN1A-222ENST00000642141 VGLL2Q8N8G2 317 aa12.88□□□□□ -0.35
SCN1A-222ENST00000642141 FRAT1Q92837 279 aaPredicted RBP12.88□□□□□ -0.35
SCN1A-222ENST00000642141 ABHD8Q96I13 439 aa12.88□□□□□ -0.35
SCN1A-222ENST00000642141 API5Q9BZZ5 524 aaKnown RBP12.88□□□□□ -0.35
SCN1A-222ENST00000642141 ANGEL1Q9UNK9 670 aaKnown RBP12.88□□□□□ -0.35
SCN1A-222ENST00000642141 TNNQ9UQP3 1299 aa12.88□□□□□ -0.35
SCN1A-222ENST00000642141 FAM205AQ6ZU69 1335 aa12.88□□□□□ -0.35
SCN1A-222ENST00000642141 EYA2O00167 538 aa12.87□□□□□ -0.35
SCN1A-222ENST00000642141 MYO1BO43795 1136 aa12.87□□□□□ -0.35
SCN1A-222ENST00000642141 BCAR3O75815 825 aa12.87□□□□□ -0.35
SCN1A-222ENST00000642141 CT47B1P0C2W7 299 aaPredicted RBP12.87□□□□□ -0.35
SCN1A-222ENST00000642141 MMP14P50281 582 aa12.87□□□□□ -0.35
SCN1A-222ENST00000642141 FKBP1AP62942 108 aaKnown RBP12.87□□□□□ -0.35
SCN1A-222ENST00000642141 MTMR14Q8NCE2 650 aa12.87□□□□□ -0.35
SCN1A-222ENST00000642141 MEIS3Q99687 375 aa12.87□□□□□ -0.35
SCN1A-222ENST00000642141 TDRD3Q9H7E2 651 aaKnown RBP12.87□□□□□ -0.35
SCN1A-222ENST00000642141 PA2G4Q9UQ80 394 aaKnown RBP12.87□□□□□ -0.35
SCN1A-222ENST00000642141 IFIT1P09914 478 aaKnown RBP12.86□□□□□ -0.35
SCN1A-222ENST00000642141 HNRNPUQ00839 825 aaKnown RBP eCLIP12.86□□□□□ -0.35
SCN1A-222ENST00000642141 RASA3Q14644 834 aa12.86□□□□□ -0.35
SCN1A-222ENST00000642141 PUM3Q15397 648 aaKnown RBP12.86□□□□□ -0.35
SCN1A-222ENST00000642141 NBPF12Q5TAG4 269 aaPredicted RBP12.86□□□□□ -0.35
SCN1A-222ENST00000642141 ATG9AQ7Z3C6 839 aa12.86□□□□□ -0.35
SCN1A-222ENST00000642141 ARMC9Q7Z3E5 817 aa12.86□□□□□ -0.35
SCN1A-222ENST00000642141 CLUAP1Q96AJ1 413 aa12.86□□□□□ -0.35
SCN1A-222ENST00000642141 PAPPA2Q9BXP8 1791 aa12.85□□□□□ -0.35
SCN1A-222ENST00000642141 CCDC85CA6NKD9 419 aa12.85□□□□□ -0.35
SCN1A-222ENST00000642141 TCP10L2B9ZVM9 353 aa12.85□□□□□ -0.35
SCN1A-222ENST00000642141 CRKP46108 304 aa12.85□□□□□ -0.35
SCN1A-222ENST00000642141 CACNB3P54284 484 aa12.85□□□□□ -0.35
SCN1A-222ENST00000642141 DGKZQ13574 1117 aa12.85□□□□□ -0.35
SCN1A-222ENST00000642141 DZIP1LQ8IYY4 767 aaKnown RBP12.85□□□□□ -0.35
SCN1A-222ENST00000642141 CLMNQ96JQ2 1002 aa12.85□□□□□ -0.35
SCN1A-222ENST00000642141 ZNF70Q9UC06 446 aaPredicted RBP12.85□□□□□ -0.35
SCN1A-222ENST00000642141 CASP8AP2Q9UKL3 1982 aa12.84□□□□□ -0.35
SCN1A-222ENST00000642141 TBC1D8O95759 1140 aa12.84□□□□□ -0.35
SCN1A-222ENST00000642141 SLC5A1P13866 664 aa12.84□□□□□ -0.35
SCN1A-222ENST00000642141 FGFR2P21802 821 aa12.84□□□□□ -0.35
SCN1A-222ENST00000642141 CDAN1Q8IWY9 1227 aa12.84□□□□□ -0.35
SCN1A-222ENST00000642141 SLC10A4Q96EP9 437 aa12.84□□□□□ -0.35
SCN1A-222ENST00000642141 MCOLN1Q9GZU1 580 aa12.84□□□□□ -0.35
SCN1A-222ENST00000642141 SERPINA10Q9UK55 444 aa12.84□□□□□ -0.35
SCN1A-222ENST00000642141 SUPT20HL1Q3ZLR7 823 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms