RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ZBED3Q96IU2 234 aaPredicted RBP19.14■□□□□ 0.65
SYNE2-228ENST00000639659 PLA2G12BQ9BX93 195 aa19.14■□□□□ 0.65
SYNE2-228ENST00000639659 ECM29Q5VYK3 1845 aa19.14■□□□□ 0.65
SYNE2-228ENST00000639659 CASP7P55210 303 aa19.13■□□□□ 0.65
SYNE2-228ENST00000639659 CFAP100Q494V2 611 aa19.13■□□□□ 0.65
SYNE2-228ENST00000639659 NOM1Q5C9Z4 860 aaKnown RBP19.13■□□□□ 0.65
SYNE2-228ENST00000639659 ZNF804AQ7Z570 1209 aa19.13■□□□□ 0.65
SYNE2-228ENST00000639659 IFNL1Q8IU54 200 aa19.13■□□□□ 0.65
SYNE2-228ENST00000639659 WNK4Q96J92 1243 aa19.13■□□□□ 0.65
SYNE2-228ENST00000639659 SSC5DA1L4H1 1573 aa19.13■□□□□ 0.65
SYNE2-228ENST00000639659 A0A1B0GUL6 1792 aa19.12■□□□□ 0.65
SYNE2-228ENST00000639659 IFIT5Q13325 482 aaKnown RBP19.12■□□□□ 0.65
SYNE2-228ENST00000639659 TAF7LQ5H9L4 462 aa19.12■□□□□ 0.65
SYNE2-228ENST00000639659 LINS1Q8NG48 757 aa19.12■□□□□ 0.65
SYNE2-228ENST00000639659 SALL2Q9Y467 1007 aaPredicted RBP19.12■□□□□ 0.65
SYNE2-228ENST00000639659 IGF2BP3O00425 579 aaKnown RBP eCLIP19.11■□□□□ 0.65
SYNE2-228ENST00000639659 CSF1RP07333 972 aa19.11■□□□□ 0.65
SYNE2-228ENST00000639659 WWC1Q8IX03 1113 aa19.11■□□□□ 0.65
SYNE2-228ENST00000639659 AOX1Q06278 1338 aa19.1■□□□□ 0.65
SYNE2-228ENST00000639659 SUPT20HL1Q3ZLR7 823 aa19.1■□□□□ 0.65
SYNE2-228ENST00000639659 CCDC184Q52MB2 194 aa19.1■□□□□ 0.65
SYNE2-228ENST00000639659 NBPF12Q5TAG4 269 aaPredicted RBP19.1■□□□□ 0.65
SYNE2-228ENST00000639659 OTOP1Q7RTM1 612 aa19.1■□□□□ 0.65
SYNE2-228ENST00000639659 CFHR5Q9BXR6 569 aa19.1■□□□□ 0.65
SYNE2-228ENST00000639659 PPP2R3BQ9Y5P8 575 aa19.1■□□□□ 0.65
SYNE2-228ENST00000639659 SPDYE2BA6NHP3 402 aa19.09■□□□□ 0.65
SYNE2-228ENST00000639659 F6X3S4 739 aa19.09■□□□□ 0.65
SYNE2-228ENST00000639659 SPDYE6P0CI01 402 aa19.09■□□□□ 0.65
SYNE2-228ENST00000639659 ZBTB48P10074 688 aaPredicted RBP19.09■□□□□ 0.65
SYNE2-228ENST00000639659 IREB2P48200 963 aaKnown RBP19.09■□□□□ 0.65
SYNE2-228ENST00000639659 INHBEP58166 350 aa19.09■□□□□ 0.65
SYNE2-228ENST00000639659 CD99L2Q8TCZ2 262 aa19.09■□□□□ 0.65
SYNE2-228ENST00000639659 ZNF594Q96JF6 807 aaPredicted RBP19.09■□□□□ 0.65
SYNE2-228ENST00000639659 PRMT6Q96LA8 375 aaPredicted RBP19.09■□□□□ 0.65
SYNE2-228ENST00000639659 FANCIQ9NVI1 1328 aa19.08■□□□□ 0.65
SYNE2-228ENST00000639659 CNNM1Q9NRU3 951 aa19.08■□□□□ 0.64
SYNE2-228ENST00000639659 IRS2Q9Y4H2 1338 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 POTEFA5A3E0 1075 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 FOXO4P98177 505 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 CRHR2Q13324 411 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 RASA3Q14644 834 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 MAP3K11Q16584 847 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 OTUD7BQ6GQQ9 843 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 LMBR1LQ6UX01 489 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 MTMR14Q8NCE2 650 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 ERO1AQ96HE7 468 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 ELP3Q9H9T3 547 aa19.07■□□□□ 0.64
SYNE2-228ENST00000639659 IL1R1P14778 569 aa19.06■□□□□ 0.64
SYNE2-228ENST00000639659 GJA5P36382 358 aa19.06■□□□□ 0.64
SYNE2-228ENST00000639659 CCDC27Q2M243 656 aa19.06■□□□□ 0.64
SYNE2-228ENST00000639659 CCDC57Q2TAC2 916 aa19.06■□□□□ 0.64
SYNE2-228ENST00000639659 OTOFQ9HC10 1997 aa19.06■□□□□ 0.64
SYNE2-228ENST00000639659 EPHA10Q5JZY3 1008 aa19.05■□□□□ 0.64
SYNE2-228ENST00000639659 LDHAL6AQ6ZMR3 332 aa19.05■□□□□ 0.64
SYNE2-228ENST00000639659 C15orf52Q6ZUT6 534 aaKnown RBP19.05■□□□□ 0.64
SYNE2-228ENST00000639659 ANKRD13AQ8IZ07 590 aa19.05■□□□□ 0.64
SYNE2-228ENST00000639659 IL16Q14005 1332 aa19.04■□□□□ 0.64
SYNE2-228ENST00000639659 USP2O75604 605 aaPredicted RBP19.04■□□□□ 0.64
SYNE2-228ENST00000639659 EXOSC9Q06265 439 aaKnown RBP19.04■□□□□ 0.64
SYNE2-228ENST00000639659 MFSD14BQ5SR56 506 aa19.04■□□□□ 0.64
SYNE2-228ENST00000639659 OPTNQ96CV9 577 aa19.04■□□□□ 0.64
SYNE2-228ENST00000639659 TDRD3Q9H7E2 651 aaKnown RBP19.04■□□□□ 0.64
SYNE2-228ENST00000639659 EFCC1Q9HA90 598 aa19.04■□□□□ 0.64
SYNE2-228ENST00000639659 TTF2Q9UNY4 1162 aaKnown RBP19.04■□□□□ 0.64
SYNE2-228ENST00000639659 CACNA1FO60840 1977 aa19.04■□□□□ 0.64
SYNE2-228ENST00000639659 HTTP42858 3142 aa19.03■□□□□ 0.64
SYNE2-228ENST00000639659 TCP10L2B9ZVM9 353 aa19.03■□□□□ 0.64
SYNE2-228ENST00000639659 GYG1P46976 350 aa19.03■□□□□ 0.64
SYNE2-228ENST00000639659 FKBP1AP62942 108 aaKnown RBP19.03■□□□□ 0.64
SYNE2-228ENST00000639659 TNFAIP1Q13829 316 aa19.03■□□□□ 0.64
SYNE2-228ENST00000639659 BEND3Q5T5X7 828 aa19.03■□□□□ 0.64
SYNE2-228ENST00000639659 C9orf78Q9NZ63 289 aaPredicted RBP19.03■□□□□ 0.64
SYNE2-228ENST00000639659 ZNF70Q9UC06 446 aaPredicted RBP19.03■□□□□ 0.64
SYNE2-228ENST00000639659 PTPN22Q9Y2R2 807 aa19.03■□□□□ 0.64
SYNE2-228ENST00000639659 SP3Q02447 781 aa19.02■□□□□ 0.64
SYNE2-228ENST00000639659 INTS3Q68E01 1043 aaKnown RBP19.02■□□□□ 0.64
SYNE2-228ENST00000639659 SLC4A10Q6U841 1118 aa19.02■□□□□ 0.64
SYNE2-228ENST00000639659 CDAN1Q8IWY9 1227 aa19.02■□□□□ 0.64
SYNE2-228ENST00000639659 GCC1Q96CN9 775 aa19.02■□□□□ 0.64
SYNE2-228ENST00000639659 LAMB1P07942 1786 aa19.01■□□□□ 0.63
SYNE2-228ENST00000639659 GRM8O00222 908 aa19.01■□□□□ 0.63
SYNE2-228ENST00000639659 VAMP4O75379 141 aa19.01■□□□□ 0.63
SYNE2-228ENST00000639659 SPDYE2Q495Y8 402 aa19.01■□□□□ 0.63
SYNE2-228ENST00000639659 CNKSR2Q8WXI2 1034 aa19.01■□□□□ 0.63
SYNE2-228ENST00000639659 PTPN18Q99952 460 aa19.01■□□□□ 0.63
SYNE2-228ENST00000639659 IQSEC3Q9UPP2 1182 aaPredicted RBP19.01■□□□□ 0.63
SYNE2-228ENST00000639659 MYCP01106 439 aaPredicted RBP19■□□□□ 0.63
SYNE2-228ENST00000639659 HIBADHP31937 336 aaKnown RBP19■□□□□ 0.63
SYNE2-228ENST00000639659 CHAF1AQ13111 956 aaPredicted RBP19■□□□□ 0.63
SYNE2-228ENST00000639659 TAF1CQ15572 869 aaPredicted RBP19■□□□□ 0.63
SYNE2-228ENST00000639659 TMEM39BQ9GZU3 492 aa19■□□□□ 0.63
SYNE2-228ENST00000639659 MRS2Q9HD23 443 aa19■□□□□ 0.63
SYNE2-228ENST00000639659 ARAP2Q8WZ64 1704 aa19■□□□□ 0.63
SYNE2-228ENST00000639659 CCL15-CCL14A0A0B4J2E2 113 aa18.99■□□□□ 0.63
SYNE2-228ENST00000639659 UNCXA6NJT0 531 aa18.99■□□□□ 0.63
SYNE2-228ENST00000639659 ECM2O94769 699 aaPredicted RBP18.99■□□□□ 0.63
SYNE2-228ENST00000639659 EN2P19622 333 aaPredicted RBP18.99■□□□□ 0.63
SYNE2-228ENST00000639659 CCL15Q16663 113 aa18.99■□□□□ 0.63
SYNE2-228ENST00000639659 VPS37DQ86XT2 251 aa18.99■□□□□ 0.63
SYNE2-228ENST00000639659 DZIP1LQ8IYY4 767 aaKnown RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms