RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CCDC158Q5M9N0 1113 aa23.45■■□□□ 1.34
SQSTM1-216ENST00000626660 RSBN1LQ6PCB5 846 aaPredicted RBP23.45■■□□□ 1.34
SQSTM1-216ENST00000626660 DBNDD2Q9BQY9 259 aa23.45■■□□□ 1.34
SQSTM1-216ENST00000626660 MYO3BQ8WXR4 1341 aa23.44■■□□□ 1.34
SQSTM1-216ENST00000626660 CHAF1AQ13111 956 aaPredicted RBP23.44■■□□□ 1.34
SQSTM1-216ENST00000626660 DACT2Q5SW24 774 aa23.44■■□□□ 1.34
SQSTM1-216ENST00000626660 DBNLQ9UJU6 430 aaKnown RBP23.44■■□□□ 1.34
SQSTM1-216ENST00000626660 SCN4AP35499 1836 aa23.44■■□□□ 1.34
SQSTM1-216ENST00000626660 IQCA1LA6NCM1 817 aa23.43■■□□□ 1.34
SQSTM1-216ENST00000626660 SMARCA5O60264 1052 aaPredicted RBP23.43■■□□□ 1.34
SQSTM1-216ENST00000626660 UQCRFS1P1P0C7P4 283 aa23.43■■□□□ 1.34
SQSTM1-216ENST00000626660 TTC39AQ5SRH9 613 aa23.43■■□□□ 1.34
SQSTM1-216ENST00000626660 AGBL3Q8NEM8 1001 aa23.43■■□□□ 1.34
SQSTM1-216ENST00000626660 DENND2AQ9ULE3 1009 aa23.43■■□□□ 1.34
SQSTM1-216ENST00000626660 ZNF646O15015 1829 aaPredicted RBP23.43■■□□□ 1.34
SQSTM1-216ENST00000626660 IGHDP01880 384 aa23.42■■□□□ 1.34
SQSTM1-216ENST00000626660 TBC1D22AQ8WUA7 517 aa23.42■■□□□ 1.34
SQSTM1-216ENST00000626660 DPF2Q92785 391 aa23.42■■□□□ 1.34
SQSTM1-216ENST00000626660 RRAGCQ9HB90 399 aa23.42■■□□□ 1.34
SQSTM1-216ENST00000626660 TLR7Q9NYK1 1049 aaKnown RBP23.42■■□□□ 1.34
SQSTM1-216ENST00000626660 HACL1Q9UJ83 578 aa23.42■■□□□ 1.34
SQSTM1-216ENST00000626660 JAG2Q9Y219 1238 aa23.42■■□□□ 1.34
SQSTM1-216ENST00000626660 ZBTB12Q9Y330 459 aaPredicted RBP23.42■■□□□ 1.34
SQSTM1-216ENST00000626660 ZBTB22O15209 634 aa23.41■■□□□ 1.34
SQSTM1-216ENST00000626660 VEGFAP15692 232 aaPredicted RBP23.41■■□□□ 1.34
SQSTM1-216ENST00000626660 FKBP1AP62942 108 aaKnown RBP23.41■■□□□ 1.34
SQSTM1-216ENST00000626660 ANKRD45Q5TZF3 282 aa23.41■■□□□ 1.34
SQSTM1-216ENST00000626660 NMRK2Q9NPI5 230 aa23.41■■□□□ 1.34
SQSTM1-216ENST00000626660 ARID4AP29374 1257 aaPredicted RBP23.4■■□□□ 1.34
SQSTM1-216ENST00000626660 SCNN1DP51172 638 aa23.4■■□□□ 1.34
SQSTM1-216ENST00000626660 MFSD14BQ5SR56 506 aa23.4■■□□□ 1.34
SQSTM1-216ENST00000626660 SMC5Q8IY18 1101 aa23.4■■□□□ 1.34
SQSTM1-216ENST00000626660 WDR66Q8TBY9 1149 aa23.4■■□□□ 1.34
SQSTM1-216ENST00000626660 GPRC5DQ9NZD1 345 aa23.4■■□□□ 1.34
SQSTM1-216ENST00000626660 H7C1D1 291 aa23.39■■□□□ 1.33
SQSTM1-216ENST00000626660 KIF3CO14782 793 aa23.39■■□□□ 1.33
SQSTM1-216ENST00000626660 APLP1P51693 650 aa23.39■■□□□ 1.33
SQSTM1-216ENST00000626660 RASGRF1Q13972 1273 aa23.39■■□□□ 1.33
SQSTM1-216ENST00000626660 GMLQ99445 158 aa23.39■■□□□ 1.33
SQSTM1-216ENST00000626660 MXD3Q9BW11 206 aa23.39■■□□□ 1.33
SQSTM1-216ENST00000626660 PDS5AQ29RF7 1337 aaKnown RBP23.38■■□□□ 1.33
SQSTM1-216ENST00000626660 MICALL2Q8IY33 904 aa23.38■■□□□ 1.33
SQSTM1-216ENST00000626660 ZNF512BQ96KM6 892 aaPredicted RBP23.38■■□□□ 1.33
SQSTM1-216ENST00000626660 CNOT7Q9UIV1 285 aaKnown RBP23.38■■□□□ 1.33
SQSTM1-216ENST00000626660 USP17L8P0C7I0 530 aa23.37■■□□□ 1.33
SQSTM1-216ENST00000626660 EPS15P42566 896 aa23.37■■□□□ 1.33
SQSTM1-216ENST00000626660 OGFOD1Q8N543 542 aa23.37■■□□□ 1.33
SQSTM1-216ENST00000626660 CERS5Q8N5B7 392 aa23.37■■□□□ 1.33
SQSTM1-216ENST00000626660 GPATCH3Q96I76 525 aa23.37■■□□□ 1.33
SQSTM1-216ENST00000626660 COL1A1P02452 1464 aaPredicted RBP23.36■■□□□ 1.33
SQSTM1-216ENST00000626660 EPHX2P34913 555 aa23.36■■□□□ 1.33
SQSTM1-216ENST00000626660 MMP14P50281 582 aa23.36■■□□□ 1.33
SQSTM1-216ENST00000626660 B4GALNT3Q6L9W6 998 aa23.36■■□□□ 1.33
SQSTM1-216ENST00000626660 KIAA0825Q8IV33 1275 aa23.36■■□□□ 1.33
SQSTM1-216ENST00000626660 SPATA5Q8NB90 893 aa23.36■■□□□ 1.33
SQSTM1-216ENST00000626660 HMG20BQ9P0W2 317 aa23.36■■□□□ 1.33
SQSTM1-216ENST00000626660 HDAC9Q9UKV0 1011 aa23.36■■□□□ 1.33
SQSTM1-216ENST00000626660 POTECB2RU33 542 aa23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 TOMM70O94826 608 aa23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 MCAMP43121 646 aa23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 ERICH6BQ5W0A0 696 aa23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 C16orf71Q8IYS4 520 aaPredicted RBP23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 ZGPATQ8N5A5 531 aaKnown RBP23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 TAF1DQ9H5J8 278 aaPredicted RBP23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 ADARB2Q9NS39 739 aaKnown RBP23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 SUGT1Q9Y2Z0 365 aa23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 AKAP11Q9UKA4 1901 aa23.35■■□□□ 1.33
SQSTM1-216ENST00000626660 SALL1Q9NSC2 1324 aa23.33■■□□□ 1.33
SQSTM1-216ENST00000626660 F8W031 263 aaPredicted RBP23.33■■□□□ 1.33
SQSTM1-216ENST00000626660 SCARF1Q14162 830 aa23.33■■□□□ 1.33
SQSTM1-216ENST00000626660 PNMA8AQ86V59 439 aaPredicted RBP23.33■■□□□ 1.33
SQSTM1-216ENST00000626660 SNRKQ9NRH2 765 aa23.33■■□□□ 1.33
SQSTM1-216ENST00000626660 MAST3O60307 1309 aa23.33■■□□□ 1.32
SQSTM1-216ENST00000626660 SHTN1A0MZ66 631 aa23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 ZNF280AP59817 542 aaPredicted RBP23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 NUCB1Q02818 461 aa23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 EAPPQ56P03 285 aaPredicted RBP23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 SPTY2D1Q68D10 685 aaPredicted RBP23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 PI16Q6UXB8 463 aa23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 USP50Q70EL3 339 aaPredicted RBP23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 ECHDC1Q9NTX5 307 aa23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 TTF2Q9UNY4 1162 aaKnown RBP23.32■■□□□ 1.32
SQSTM1-216ENST00000626660 LDHBP07195 334 aaKnown RBP23.31■■□□□ 1.32
SQSTM1-216ENST00000626660 CHD1LQ86WJ1 897 aa23.31■■□□□ 1.32
SQSTM1-216ENST00000626660 CCDC136Q96JN2 1154 aa23.31■■□□□ 1.32
SQSTM1-216ENST00000626660 LNPKQ9C0E8 428 aa23.31■■□□□ 1.32
SQSTM1-216ENST00000626660 ABCF2Q9UG63 623 aa23.31■■□□□ 1.32
SQSTM1-216ENST00000626660 ATP5JP18859 108 aa23.3■■□□□ 1.32
SQSTM1-216ENST00000626660 ZAP70P43403 619 aa23.3■■□□□ 1.32
SQSTM1-216ENST00000626660 KIF4BQ2VIQ3 1234 aa23.3■■□□□ 1.32
SQSTM1-216ENST00000626660 TBC1D10BQ4KMP7 808 aaPredicted RBP23.3■■□□□ 1.32
SQSTM1-216ENST00000626660 RBM26Q5T8P6 1007 aaKnown RBP23.3■■□□□ 1.32
SQSTM1-216ENST00000626660 MYOZ2Q9NPC6 264 aa23.3■■□□□ 1.32
SQSTM1-216ENST00000626660 SAMD7Q7Z3H4 446 aa23.29■■□□□ 1.32
SQSTM1-216ENST00000626660 TTC41PQ6P2S7 1318 aa23.29■■□□□ 1.32
SQSTM1-216ENST00000626660 ERC2O15083 957 aa23.28■■□□□ 1.32
SQSTM1-216ENST00000626660 MX1P20591 662 aa23.28■■□□□ 1.32
SQSTM1-216ENST00000626660 PRDX5P30044 214 aa23.28■■□□□ 1.32
SQSTM1-216ENST00000626660 GRIK5Q16478 980 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms