RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CD99L2Q8TCZ2 262 aa18.8■□□□□ 0.6
PNKP-218ENST00000625299 MYO1BO43795 1136 aa18.79■□□□□ 0.6
PNKP-218ENST00000625299 ERO1AQ96HE7 468 aa18.79■□□□□ 0.6
PNKP-218ENST00000625299 JAG2Q9Y219 1238 aa18.79■□□□□ 0.6
PNKP-218ENST00000625299 TAF5LO75529 589 aa18.78■□□□□ 0.6
PNKP-218ENST00000625299 CRHR2Q13324 411 aa18.78■□□□□ 0.6
PNKP-218ENST00000625299 GCKRQ14397 625 aa18.78■□□□□ 0.6
PNKP-218ENST00000625299 MAP3K11Q16584 847 aa18.78■□□□□ 0.6
PNKP-218ENST00000625299 CFAP100Q494V2 611 aa18.78■□□□□ 0.6
PNKP-218ENST00000625299 INTS3Q68E01 1043 aaKnown RBP18.78■□□□□ 0.6
PNKP-218ENST00000625299 HELBQ8NG08 1087 aaPredicted RBP18.78■□□□□ 0.6
PNKP-218ENST00000625299 PPP2R3BQ9Y5P8 575 aa18.78■□□□□ 0.6
PNKP-218ENST00000625299 LAMB1P07942 1786 aa18.78■□□□□ 0.6
PNKP-218ENST00000625299 IREB2P48200 963 aaKnown RBP18.77■□□□□ 0.6
PNKP-218ENST00000625299 RBM5P52756 815 aaKnown RBP eCLIP18.77■□□□□ 0.6
PNKP-218ENST00000625299 SUPT20HL1Q3ZLR7 823 aa18.77■□□□□ 0.6
PNKP-218ENST00000625299 HABP4Q5JVS0 413 aaKnown RBP18.77■□□□□ 0.6
PNKP-218ENST00000625299 NBPF12Q5TAG4 269 aaPredicted RBP18.77■□□□□ 0.6
PNKP-218ENST00000625299 OTUD7BQ6GQQ9 843 aa18.77■□□□□ 0.6
PNKP-218ENST00000625299 PLA2G12BQ9BX93 195 aa18.77■□□□□ 0.6
PNKP-218ENST00000625299 PTPN22Q9Y2R2 807 aa18.77■□□□□ 0.6
PNKP-218ENST00000625299 CHMP3Q9Y3E7 222 aa18.77■□□□□ 0.6
PNKP-218ENST00000625299 A0A1B0GUL6 1792 aa18.77■□□□□ 0.6
PNKP-218ENST00000625299 KIAA0100Q14667 2235 aaKnown RBP18.77■□□□□ 0.59
PNKP-218ENST00000625299 RBBP6Q7Z6E9 1792 aaKnown RBP18.76■□□□□ 0.59
PNKP-218ENST00000625299 ANKRD18BA2A2Z9 1011 aa18.76■□□□□ 0.59
PNKP-218ENST00000625299 SLC4A2P04920 1241 aa18.76■□□□□ 0.59
PNKP-218ENST00000625299 TWISTNBQ3B726 338 aaPredicted RBP18.76■□□□□ 0.59
PNKP-218ENST00000625299 MTMR14Q8NCE2 650 aa18.76■□□□□ 0.59
PNKP-218ENST00000625299 MYH16Q9H6N6 1097 aa18.76■□□□□ 0.59
PNKP-218ENST00000625299 EFCC1Q9HA90 598 aa18.76■□□□□ 0.59
PNKP-218ENST00000625299 BRCA2P51587 3418 aa18.75■□□□□ 0.59
PNKP-218ENST00000625299 AOX1Q06278 1338 aa18.75■□□□□ 0.59
PNKP-218ENST00000625299 SPDYE2BA6NHP3 402 aa18.75■□□□□ 0.59
PNKP-218ENST00000625299 CSF1RP07333 972 aa18.75■□□□□ 0.59
PNKP-218ENST00000625299 SPDYE6P0CI01 402 aa18.75■□□□□ 0.59
PNKP-218ENST00000625299 GJA5P36382 358 aa18.75■□□□□ 0.59
PNKP-218ENST00000625299 ZNF804AQ7Z570 1209 aa18.75■□□□□ 0.59
PNKP-218ENST00000625299 PRMT6Q96LA8 375 aaPredicted RBP18.75■□□□□ 0.59
PNKP-218ENST00000625299 PRKRIP1Q9H875 184 aaPredicted RBP18.75■□□□□ 0.59
PNKP-218ENST00000625299 OTOFQ9HC10 1997 aa18.75■□□□□ 0.59
PNKP-218ENST00000625299 EN2P19622 333 aaPredicted RBP18.74■□□□□ 0.59
PNKP-218ENST00000625299 CASP7P55210 303 aa18.74■□□□□ 0.59
PNKP-218ENST00000625299 FLIIQ13045 1269 aa18.74■□□□□ 0.59
PNKP-218ENST00000625299 FKBP5Q13451 457 aaPredicted RBP18.74■□□□□ 0.59
PNKP-218ENST00000625299 ANKRD13AQ8IZ07 590 aa18.74■□□□□ 0.59
PNKP-218ENST00000625299 ELP3Q9H9T3 547 aa18.74■□□□□ 0.59
PNKP-218ENST00000625299 IRS2Q9Y4H2 1338 aa18.74■□□□□ 0.59
PNKP-218ENST00000625299 USP2O75604 605 aaPredicted RBP18.73■□□□□ 0.59
PNKP-218ENST00000625299 SP3Q02447 781 aa18.73■□□□□ 0.59
PNKP-218ENST00000625299 RASA3Q14644 834 aa18.73■□□□□ 0.59
PNKP-218ENST00000625299 DNAAF4Q8WXU2 420 aa18.73■□□□□ 0.59
PNKP-218ENST00000625299 UNCXA6NJT0 531 aa18.72■□□□□ 0.59
PNKP-218ENST00000625299 PLIN1O60240 522 aa18.72■□□□□ 0.59
PNKP-218ENST00000625299 IFIT5Q13325 482 aaKnown RBP18.72■□□□□ 0.59
PNKP-218ENST00000625299 ARMC5Q96C12 935 aa18.72■□□□□ 0.59
PNKP-218ENST00000625299 OPTNQ96CV9 577 aa18.72■□□□□ 0.59
PNKP-218ENST00000625299 PTPN18Q99952 460 aa18.72■□□□□ 0.59
PNKP-218ENST00000625299 IL1R1P14778 569 aa18.71■□□□□ 0.59
PNKP-218ENST00000625299 C15orf52Q6ZUT6 534 aaKnown RBP18.71■□□□□ 0.59
PNKP-218ENST00000625299 LINS1Q8NG48 757 aa18.71■□□□□ 0.59
PNKP-218ENST00000625299 CAP1Q01518 475 aa18.7■□□□□ 0.58
PNKP-218ENST00000625299 TAF7LQ5H9L4 462 aa18.7■□□□□ 0.58
PNKP-218ENST00000625299 TMEM106CQ9BVX2 250 aa18.7■□□□□ 0.58
PNKP-218ENST00000625299 MYCP01106 439 aaPredicted RBP18.69■□□□□ 0.58
PNKP-218ENST00000625299 FKBP1AP62942 108 aaKnown RBP18.69■□□□□ 0.58
PNKP-218ENST00000625299 TNFAIP1Q13829 316 aa18.69■□□□□ 0.58
PNKP-218ENST00000625299 ZNF594Q96JF6 807 aaPredicted RBP18.69■□□□□ 0.58
PNKP-218ENST00000625299 TESPA1A2RU30 521 aaPredicted RBP18.68■□□□□ 0.58
PNKP-218ENST00000625299 FOXO4P98177 505 aa18.68■□□□□ 0.58
PNKP-218ENST00000625299 TAF1CQ15572 869 aaPredicted RBP18.68■□□□□ 0.58
PNKP-218ENST00000625299 CNKSR2Q8WXI2 1034 aa18.68■□□□□ 0.58
PNKP-218ENST00000625299 TDRD3Q9H7E2 651 aaKnown RBP18.68■□□□□ 0.58
PNKP-218ENST00000625299 CNNM1Q9NRU3 951 aa18.68■□□□□ 0.58
PNKP-218ENST00000625299 ZNF70Q9UC06 446 aaPredicted RBP18.68■□□□□ 0.58
PNKP-218ENST00000625299 TTF2Q9UNY4 1162 aaKnown RBP18.68■□□□□ 0.58
PNKP-218ENST00000625299 CCL15-CCL14A0A0B4J2E2 113 aa18.67■□□□□ 0.58
PNKP-218ENST00000625299 TCP10L2B9ZVM9 353 aa18.67■□□□□ 0.58
PNKP-218ENST00000625299 CCL15Q16663 113 aa18.67■□□□□ 0.58
PNKP-218ENST00000625299 SPDYE2Q495Y8 402 aa18.67■□□□□ 0.58
PNKP-218ENST00000625299 SLC9C1Q4G0N8 1177 aa18.67■□□□□ 0.58
PNKP-218ENST00000625299 MFSD14BQ5SR56 506 aa18.67■□□□□ 0.58
PNKP-218ENST00000625299 LMBR1LQ6UX01 489 aa18.67■□□□□ 0.58
PNKP-218ENST00000625299 CDAN1Q8IWY9 1227 aa18.67■□□□□ 0.58
PNKP-218ENST00000625299 PTCH2Q9Y6C5 1203 aa18.67■□□□□ 0.58
PNKP-218ENST00000625299 CCDC57Q2TAC2 916 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 SLC4A8Q2Y0W8 1093 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 LDHAL6AQ6ZMR3 332 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 WWC1Q8IX03 1113 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 BRI3BPQ8WY22 251 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 ZNF333Q96JL9 665 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 MS4A4AQ96JQ5 239 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 ZFYVE28Q9HCC9 887 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 CACNA1FO60840 1977 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 ARAP2Q8WZ64 1704 aa18.66■□□□□ 0.58
PNKP-218ENST00000625299 F6X3S4 739 aa18.65■□□□□ 0.58
PNKP-218ENST00000625299 FXR1P51114 621 aaKnown RBP eCLIP18.65■□□□□ 0.58
PNKP-218ENST00000625299 VGLL4Q14135 290 aa18.65■□□□□ 0.58
PNKP-218ENST00000625299 ARHGEF6Q15052 776 aa18.65■□□□□ 0.58
PNKP-218ENST00000625299 NBPF11Q86T75 865 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms