RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 IFIT2P09913 472 aaKnown RBP24.19■■□□□ 1.46
UPF3A-211ENST00000618700 CENPQQ7L2Z9 268 aaPredicted RBP24.19■■□□□ 1.46
UPF3A-211ENST00000618700 ZNF541Q9H0D2 1346 aa24.18■■□□□ 1.46
UPF3A-211ENST00000618700 ARID4AP29374 1257 aaPredicted RBP24.18■■□□□ 1.46
UPF3A-211ENST00000618700 B4GALNT3Q6L9W6 998 aa24.18■■□□□ 1.46
UPF3A-211ENST00000618700 GORABQ5T7V8 394 aa24.17■■□□□ 1.46
UPF3A-211ENST00000618700 CHD1LQ86WJ1 897 aa24.17■■□□□ 1.46
UPF3A-211ENST00000618700 KCNQ5Q9NR82 932 aa24.17■■□□□ 1.46
UPF3A-211ENST00000618700 SALL3Q9BXA9 1300 aa24.16■■□□□ 1.46
UPF3A-211ENST00000618700 SEMA3EO15041 775 aa24.16■■□□□ 1.46
UPF3A-211ENST00000618700 CXCL9Q07325 125 aa24.16■■□□□ 1.46
UPF3A-211ENST00000618700 ZNF512BQ96KM6 892 aaPredicted RBP24.16■■□□□ 1.46
UPF3A-211ENST00000618700 LNPKQ9C0E8 428 aa24.16■■□□□ 1.46
UPF3A-211ENST00000618700 GNL3LQ9NVN8 582 aaKnown RBP24.16■■□□□ 1.46
UPF3A-211ENST00000618700 ZBTB47Q9UFB7 747 aaPredicted RBP24.16■■□□□ 1.46
UPF3A-211ENST00000618700 MYH13Q9UKX3 1938 aa24.16■■□□□ 1.46
UPF3A-211ENST00000618700 FAM205AQ6ZU69 1335 aa24.15■■□□□ 1.46
UPF3A-211ENST00000618700 RAD17O75943 681 aa24.15■■□□□ 1.46
UPF3A-211ENST00000618700 EIF6P56537 245 aaKnown RBP24.15■■□□□ 1.46
UPF3A-211ENST00000618700 RASGRF1Q13972 1273 aa24.15■■□□□ 1.46
UPF3A-211ENST00000618700 CCDC158Q5M9N0 1113 aa24.15■■□□□ 1.46
UPF3A-211ENST00000618700 C16orf71Q8IYS4 520 aaPredicted RBP24.15■■□□□ 1.46
UPF3A-211ENST00000618700 BCL11AQ9H165 835 aa24.15■■□□□ 1.46
UPF3A-211ENST00000618700 IQSEC3Q9UPP2 1182 aaPredicted RBP24.15■■□□□ 1.46
UPF3A-211ENST00000618700 PDS5AQ29RF7 1337 aaKnown RBP24.14■■□□□ 1.46
UPF3A-211ENST00000618700 UQCRFS1P1P0C7P4 283 aa24.14■■□□□ 1.45
UPF3A-211ENST00000618700 TTC39AQ5SRH9 613 aa24.14■■□□□ 1.45
UPF3A-211ENST00000618700 STRIP1Q5VSL9 837 aa24.14■■□□□ 1.45
UPF3A-211ENST00000618700 CIAPIN1Q6FI81 312 aa24.14■■□□□ 1.45
UPF3A-211ENST00000618700 OTUD7AQ8TE49 926 aaPredicted RBP24.14■■□□□ 1.45
UPF3A-211ENST00000618700 USP17L3A6NCW0 530 aa24.13■■□□□ 1.45
UPF3A-211ENST00000618700 USP17L4A6NCW7 530 aa24.13■■□□□ 1.45
UPF3A-211ENST00000618700 PSMD14O00487 310 aa24.13■■□□□ 1.45
UPF3A-211ENST00000618700 GTF2IP78347 998 aa24.13■■□□□ 1.45
UPF3A-211ENST00000618700 SCARF1Q14162 830 aa24.13■■□□□ 1.45
UPF3A-211ENST00000618700 DACT2Q5SW24 774 aa24.13■■□□□ 1.45
UPF3A-211ENST00000618700 USP17L1Q7RTZ2 530 aa24.13■■□□□ 1.45
UPF3A-211ENST00000618700 AKAP11Q9UKA4 1901 aa24.13■■□□□ 1.45
UPF3A-211ENST00000618700 VIL1P09327 827 aaKnown RBP24.12■■□□□ 1.45
UPF3A-211ENST00000618700 MCAMP43121 646 aa24.12■■□□□ 1.45
UPF3A-211ENST00000618700 TNIP1Q15025 636 aa24.12■■□□□ 1.45
UPF3A-211ENST00000618700 DENND2AQ9ULE3 1009 aa24.12■■□□□ 1.45
UPF3A-211ENST00000618700 FRAT2O75474 233 aaPredicted RBP24.11■■□□□ 1.45
UPF3A-211ENST00000618700 TTLL5Q6EMB2 1281 aa24.11■■□□□ 1.45
UPF3A-211ENST00000618700 GPC2Q8N158 579 aa24.11■■□□□ 1.45
UPF3A-211ENST00000618700 ECHDC1Q9NTX5 307 aa24.11■■□□□ 1.45
UPF3A-211ENST00000618700 HMG20BQ9P0W2 317 aa24.11■■□□□ 1.45
UPF3A-211ENST00000618700 GLTPD2A6NH11 291 aa24.1■■□□□ 1.45
UPF3A-211ENST00000618700 ATP5JP18859 108 aa24.1■■□□□ 1.45
UPF3A-211ENST00000618700 MX1P20591 662 aa24.1■■□□□ 1.45
UPF3A-211ENST00000618700 FKBP1AP62942 108 aaKnown RBP24.1■■□□□ 1.45
UPF3A-211ENST00000618700 CHAF1AQ13111 956 aaPredicted RBP24.1■■□□□ 1.45
UPF3A-211ENST00000618700 PI16Q6UXB8 463 aa24.1■■□□□ 1.45
UPF3A-211ENST00000618700 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.1■■□□□ 1.45
UPF3A-211ENST00000618700 GPATCH3Q96I76 525 aa24.1■■□□□ 1.45
UPF3A-211ENST00000618700 TTC41PQ6P2S7 1318 aa24.1■■□□□ 1.45
UPF3A-211ENST00000618700 RSBN1LQ6PCB5 846 aaPredicted RBP24.09■■□□□ 1.45
UPF3A-211ENST00000618700 SPATA5Q8NB90 893 aa24.09■■□□□ 1.45
UPF3A-211ENST00000618700 STAP2Q9UGK3 403 aa24.09■■□□□ 1.45
UPF3A-211ENST00000618700 JAG2Q9Y219 1238 aa24.09■■□□□ 1.45
UPF3A-211ENST00000618700 SALL1Q9NSC2 1324 aa24.09■■□□□ 1.45
UPF3A-211ENST00000618700 DDNO94850 711 aaPredicted RBP24.08■■□□□ 1.45
UPF3A-211ENST00000618700 PDE4AP27815 886 aa24.08■■□□□ 1.45
UPF3A-211ENST00000618700 CERS5Q8N5B7 392 aa24.08■■□□□ 1.45
UPF3A-211ENST00000618700 FBXW7Q969H0 707 aa24.08■■□□□ 1.45
UPF3A-211ENST00000618700 GMLQ99445 158 aa24.08■■□□□ 1.45
UPF3A-211ENST00000618700 TSHZ3Q63HK5 1081 aa24.07■■□□□ 1.44
UPF3A-211ENST00000618700 DPY19L2Q6NUT2 758 aa24.07■■□□□ 1.44
UPF3A-211ENST00000618700 WDR66Q8TBY9 1149 aa24.07■■□□□ 1.44
UPF3A-211ENST00000618700 PI4K2BQ8TCG2 481 aa24.07■■□□□ 1.44
UPF3A-211ENST00000618700 TBC1D22AQ8WUA7 517 aa24.07■■□□□ 1.44
UPF3A-211ENST00000618700 L3MBTL3Q96JM7 780 aaPredicted RBP24.07■■□□□ 1.44
UPF3A-211ENST00000618700 MXD3Q9BW11 206 aa24.07■■□□□ 1.44
UPF3A-211ENST00000618700 GJA3Q9Y6H8 435 aa24.07■■□□□ 1.44
UPF3A-211ENST00000618700 MYO3BQ8WXR4 1341 aa24.07■■□□□ 1.44
UPF3A-211ENST00000618700 WDR90Q96KV7 1748 aa24.07■■□□□ 1.44
UPF3A-211ENST00000618700 RPS12P25398 132 aaKnown RBP24.06■■□□□ 1.44
UPF3A-211ENST00000618700 ZAP70P43403 619 aa24.06■■□□□ 1.44
UPF3A-211ENST00000618700 PDE1AP54750 535 aa24.06■■□□□ 1.44
UPF3A-211ENST00000618700 MFSD14BQ5SR56 506 aa24.06■■□□□ 1.44
UPF3A-211ENST00000618700 PLEKHM2Q8IWE5 1019 aa24.06■■□□□ 1.44
UPF3A-211ENST00000618700 AGBL3Q8NEM8 1001 aa24.06■■□□□ 1.44
UPF3A-211ENST00000618700 AOX1Q06278 1338 aa24.06■■□□□ 1.44
UPF3A-211ENST00000618700 SNRKQ9NRH2 765 aa24.05■■□□□ 1.44
UPF3A-211ENST00000618700 GMPSP49915 693 aaPredicted RBP24.04■■□□□ 1.44
UPF3A-211ENST00000618700 SCNN1DP51172 638 aa24.04■■□□□ 1.44
UPF3A-211ENST00000618700 DPF2Q92785 391 aa24.04■■□□□ 1.44
UPF3A-211ENST00000618700 HAUS7Q99871 368 aa24.04■■□□□ 1.44
UPF3A-211ENST00000618700 BOLA2Q9H3K6 86 aa24.04■■□□□ 1.44
UPF3A-211ENST00000618700 OSBPL3Q9H4L5 887 aa24.04■■□□□ 1.44
UPF3A-211ENST00000618700 ERC2O15083 957 aa24.03■■□□□ 1.44
UPF3A-211ENST00000618700 GLRX3O76003 335 aaKnown RBP24.03■■□□□ 1.44
UPF3A-211ENST00000618700 CYP2E1P05181 493 aaPredicted RBP24.03■■□□□ 1.44
UPF3A-211ENST00000618700 GRIK5Q16478 980 aa24.03■■□□□ 1.44
UPF3A-211ENST00000618700 ZNF526Q8TF50 670 aaPredicted RBP24.03■■□□□ 1.44
UPF3A-211ENST00000618700 GPBP1L1Q9HC44 474 aaPredicted RBP24.03■■□□□ 1.44
UPF3A-211ENST00000618700 SUGT1Q9Y2Z0 365 aa24.03■■□□□ 1.44
UPF3A-211ENST00000618700 NDUFB9Q9Y6M9 179 aa24.03■■□□□ 1.44
UPF3A-211ENST00000618700 ZGPATQ8N5A5 531 aaKnown RBP24.02■■□□□ 1.44
UPF3A-211ENST00000618700 DOCK2Q92608 1830 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms