RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 HSPA4P34932 840 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 PRPF40BQ6NWY9 871 aaKnown RBP17.19■□□□□ 0.34
USP39-220ENST00000613444 CCDC129Q6ZRS4 1044 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 OSBP2Q969R2 916 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 DENND2AQ9ULE3 1009 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 PALD1Q9ULE6 856 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 SNED1Q8TER0 1413 aa17.18■□□□□ 0.34
USP39-220ENST00000613444 TCRBV5S4A2TA0A5A2 114 aa17.18■□□□□ 0.34
USP39-220ENST00000613444 LRRFIP1Q32MZ4 808 aaKnown RBP17.18■□□□□ 0.34
USP39-220ENST00000613444 KIAA1211Q6ZU35 1233 aa17.18■□□□□ 0.34
USP39-220ENST00000613444 C7orf43Q8WVR3 580 aa17.18■□□□□ 0.34
USP39-220ENST00000613444 MAP4K1Q92918 833 aa17.18■□□□□ 0.34
USP39-220ENST00000613444 WWC3Q9ULE0 1092 aa17.18■□□□□ 0.34
USP39-220ENST00000613444 ATF5Q9Y2D1 282 aaPredicted RBP17.18■□□□□ 0.34
USP39-220ENST00000613444 CNKSR1Q969H4 720 aa17.18■□□□□ 0.34
USP39-220ENST00000613444 SGIP1Q9BQI5 828 aa17.18■□□□□ 0.34
USP39-220ENST00000613444 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.18■□□□□ 0.341e-6■■■□□ 14.8
USP39-220ENST00000613444 M0R2C6 588 aa17.17■□□□□ 0.34
USP39-220ENST00000613444 IDH1O75874 414 aaKnown RBP17.17■□□□□ 0.34
USP39-220ENST00000613444 KCNA3P22001 575 aa17.17■□□□□ 0.34
USP39-220ENST00000613444 UBE3CQ15386 1083 aa17.17■□□□□ 0.34
USP39-220ENST00000613444 SLC9C2Q5TAH2 1124 aa17.17■□□□□ 0.34
USP39-220ENST00000613444 TDRD7Q8NHU6 1098 aaKnown RBP17.17■□□□□ 0.34
USP39-220ENST00000613444 APPBP2Q92624 585 aa17.17■□□□□ 0.34
USP39-220ENST00000613444 BRCA1P38398 1863 aaKnown RBP17.16■□□□□ 0.34
USP39-220ENST00000613444 PDE6AP16499 860 aa17.16■□□□□ 0.34
USP39-220ENST00000613444 DDRGK1Q96HY6 314 aa17.16■□□□□ 0.34
USP39-220ENST00000613444 CCDC88AQ3V6T2 1871 aa17.16■□□□□ 0.34
USP39-220ENST00000613444 NECTIN1Q15223 517 aa17.16■□□□□ 0.34
USP39-220ENST00000613444 ZSCAN25Q6NSZ9 544 aa17.16■□□□□ 0.34
USP39-220ENST00000613444 MPNDQ8N594 471 aa17.16■□□□□ 0.34
USP39-220ENST00000613444 PUS7LQ9H0K6 701 aaKnown RBP17.16■□□□□ 0.34
USP39-220ENST00000613444 ANAPC15P60006 121 aa17.15■□□□□ 0.34
USP39-220ENST00000613444 KCNB2Q92953 911 aa17.15■□□□□ 0.34
USP39-220ENST00000613444 ZNF532Q9HCE3 1301 aa17.15■□□□□ 0.34
USP39-220ENST00000613444 PSDA5PKW4 1024 aaPredicted RBP17.15■□□□□ 0.34
USP39-220ENST00000613444 MAP3K12Q12852 859 aa17.15■□□□□ 0.34
USP39-220ENST00000613444 ZNF804AQ7Z570 1209 aa17.15■□□□□ 0.34
USP39-220ENST00000613444 CD209Q9NNX6 404 aa17.15■□□□□ 0.34
USP39-220ENST00000613444 C6orf229H3BNL8 230 aa17.14■□□□□ 0.33
USP39-220ENST00000613444 IL1R1P14778 569 aa17.14■□□□□ 0.33
USP39-220ENST00000613444 MCCP23508 829 aa17.14■□□□□ 0.33
USP39-220ENST00000613444 WASHC4Q2M389 1173 aa17.14■□□□□ 0.33
USP39-220ENST00000613444 VPS53Q5VIR6 699 aa17.14■□□□□ 0.33
USP39-220ENST00000613444 RBM8AQ9Y5S9 174 aaKnown RBP17.14■□□□□ 0.33
USP39-220ENST00000613444 MAST2Q6P0Q8 1798 aa17.14■□□□□ 0.33
USP39-220ENST00000613444 A0A0G2JLW4 131 aa17.13■□□□□ 0.33
USP39-220ENST00000613444 FOXP2O15409 715 aa17.13■□□□□ 0.33
USP39-220ENST00000613444 DPEP1P16444 411 aa17.13■□□□□ 0.33
USP39-220ENST00000613444 POLD1P28340 1107 aa17.13■□□□□ 0.33
USP39-220ENST00000613444 DPP8Q6V1X1 898 aaPredicted RBP17.13■□□□□ 0.33
USP39-220ENST00000613444 RASEFQ8IZ41 740 aa17.13■□□□□ 0.33
USP39-220ENST00000613444 MAGEB6Q8N7X4 407 aa17.13■□□□□ 0.33
USP39-220ENST00000613444 ZNF384Q8TF68 577 aa17.13■□□□□ 0.33
USP39-220ENST00000613444 LRP2BPQ9P2M1 347 aa17.13■□□□□ 0.33
USP39-220ENST00000613444 ABCF2Q9UG63 623 aa17.13■□□□□ 0.33
USP39-220ENST00000613444 FRAT2O75474 233 aaPredicted RBP17.12■□□□□ 0.33
USP39-220ENST00000613444 PTGER2P43116 358 aa17.12■□□□□ 0.33
USP39-220ENST00000613444 RABEP1Q15276 862 aa17.12■□□□□ 0.33
USP39-220ENST00000613444 DSCC1Q9BVC3 393 aa17.12■□□□□ 0.33
USP39-220ENST00000613444 SNX14Q9Y5W7 946 aa17.12■□□□□ 0.33
USP39-220ENST00000613444 SALL1Q9NSC2 1324 aa17.12■□□□□ 0.33
USP39-220ENST00000613444 HSPD1P10809 573 aaKnown RBP17.12■□□□□ 0.33
USP39-220ENST00000613444 RTFDC1Q9BY42 306 aaPredicted RBP17.12■□□□□ 0.33
USP39-220ENST00000613444 TBC1D2Q9BYX2 928 aa17.12■□□□□ 0.33
USP39-220ENST00000613444 GPAA1O43292 621 aa17.11■□□□□ 0.33
USP39-220ENST00000613444 CD2BP2O95400 341 aaKnown RBP17.11■□□□□ 0.33
USP39-220ENST00000613444 TGFB2P61812 414 aa17.11■□□□□ 0.33
USP39-220ENST00000613444 CHAF1AQ13111 956 aaPredicted RBP17.11■□□□□ 0.33
USP39-220ENST00000613444 CREB3L3Q68CJ9 461 aa17.11■□□□□ 0.33
USP39-220ENST00000613444 ILDR2Q71H61 639 aa17.11■□□□□ 0.33
USP39-220ENST00000613444 TTLL6Q8N841 843 aa17.11■□□□□ 0.33
USP39-220ENST00000613444 SNX21Q969T3 373 aa17.11■□□□□ 0.33
USP39-220ENST00000613444 ADGRA1Q86SQ6 560 aa17.11■□□□□ 0.33
USP39-220ENST00000613444 TMX4Q9H1E5 349 aaPredicted RBP17.11■□□□□ 0.33
USP39-220ENST00000613444 JAG2Q9Y219 1238 aa17.11■□□□□ 0.33
USP39-220ENST00000613444 ZNF646O15015 1829 aaPredicted RBP17.1■□□□□ 0.33
USP39-220ENST00000613444 SLC27A2O14975 620 aa17.1■□□□□ 0.33
USP39-220ENST00000613444 CC2D2BQ6DHV5 1058 aa17.1■□□□□ 0.33
USP39-220ENST00000613444 RIMBP2O15034 1052 aa17.09■□□□□ 0.33
USP39-220ENST00000613444 PRDX5P30044 214 aa17.09■□□□□ 0.33
USP39-220ENST00000613444 SLC4A3P48751 1232 aa17.09■□□□□ 0.33
USP39-220ENST00000613444 WDR66Q8TBY9 1149 aa17.09■□□□□ 0.33
USP39-220ENST00000613444 NSUN4Q96CB9 384 aaKnown RBP17.09■□□□□ 0.33
USP39-220ENST00000613444 COA1Q9GZY4 146 aa17.09■□□□□ 0.33
USP39-220ENST00000613444 RAI14Q9P0K7 980 aa17.09■□□□□ 0.33
USP39-220ENST00000613444 ZNF219Q9P2Y4 722 aaPredicted RBP17.09■□□□□ 0.33
USP39-220ENST00000613444 TAF6LQ9Y6J9 622 aa17.09■□□□□ 0.33
USP39-220ENST00000613444 U3KPZ7 1027 aaPredicted RBP17.09■□□□□ 0.33
USP39-220ENST00000613444 SCN9AQ15858 1988 aa17.09■□□□□ 0.33
USP39-220ENST00000613444 STRBPQ96SI9 672 aaKnown RBP17.09■□□□□ 0.33
USP39-220ENST00000613444 ZC3H12CQ9C0D7 883 aaKnown RBP17.09■□□□□ 0.33
USP39-220ENST00000613444 C21orf2O43822 256 aa17.08■□□□□ 0.33
USP39-220ENST00000613444 TSGA10IPQ3SY00 556 aa17.08■□□□□ 0.33
USP39-220ENST00000613444 ERICH6Q7L0X2 663 aa17.08■□□□□ 0.33
USP39-220ENST00000613444 LAMA4Q16363 1823 aa17.08■□□□□ 0.33
USP39-220ENST00000613444 FAM205AQ6ZU69 1335 aa17.08■□□□□ 0.32
USP39-220ENST00000613444 MYH2Q9UKX2 1941 aa17.08■□□□□ 0.32
USP39-220ENST00000613444 CYP7A1P22680 504 aa17.08■□□□□ 0.32
USP39-220ENST00000613444 MECOMQ03112 1051 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms