RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SEMA3EO15041 775 aa23.76■■□□□ 1.39
UPF1-209ENST00000600310 FRAT2O75474 233 aaPredicted RBP23.76■■□□□ 1.39
UPF1-209ENST00000600310 FKBP1AP62942 108 aaKnown RBP23.76■■□□□ 1.39
UPF1-209ENST00000600310 GMLQ99445 158 aa23.76■■□□□ 1.39
UPF1-209ENST00000600310 CEP350Q5VT06 3117 aa23.76■■□□□ 1.39
UPF1-209ENST00000600310 WDR90Q96KV7 1748 aa23.76■■□□□ 1.39
UPF1-209ENST00000600310 IQCA1LA6NCM1 817 aa23.75■■□□□ 1.39
UPF1-209ENST00000600310 NEFLP07196 543 aa23.75■■□□□ 1.39
UPF1-209ENST00000600310 VEGFAP15692 232 aaPredicted RBP23.75■■□□□ 1.39
UPF1-209ENST00000600310 MXD3Q9BW11 206 aa23.75■■□□□ 1.39
UPF1-209ENST00000600310 TLR7Q9NYK1 1049 aaKnown RBP23.75■■□□□ 1.39
UPF1-209ENST00000600310 GPRC5DQ9NZD1 345 aa23.75■■□□□ 1.39
UPF1-209ENST00000600310 MYO3BQ8WXR4 1341 aa23.75■■□□□ 1.39
UPF1-209ENST00000600310 SMARCA5O60264 1052 aaPredicted RBP23.74■■□□□ 1.39
UPF1-209ENST00000600310 LMOD1P29536 600 aaPredicted RBP23.74■■□□□ 1.39
UPF1-209ENST00000600310 CCDC158Q5M9N0 1113 aa23.74■■□□□ 1.39
UPF1-209ENST00000600310 SMC5Q8IY18 1101 aa23.74■■□□□ 1.39
UPF1-209ENST00000600310 HACL1Q9UJ83 578 aa23.74■■□□□ 1.39
UPF1-209ENST00000600310 DENND2AQ9ULE3 1009 aa23.74■■□□□ 1.39
UPF1-209ENST00000600310 JAG2Q9Y219 1238 aa23.74■■□□□ 1.39
UPF1-209ENST00000600310 IFIT2P09913 472 aaKnown RBP23.73■■□□□ 1.39
UPF1-209ENST00000600310 UQCRFS1P1P0C7P4 283 aa23.73■■□□□ 1.39
UPF1-209ENST00000600310 ARID4AP29374 1257 aaPredicted RBP23.73■■□□□ 1.39
UPF1-209ENST00000600310 CHAF1AQ13111 956 aaPredicted RBP23.73■■□□□ 1.39
UPF1-209ENST00000600310 CERS5Q8N5B7 392 aa23.73■■□□□ 1.39
UPF1-209ENST00000600310 ZNF512BQ96KM6 892 aaPredicted RBP23.73■■□□□ 1.39
UPF1-209ENST00000600310 CNOT7Q9UIV1 285 aaKnown RBP23.73■■□□□ 1.39
UPF1-209ENST00000600310 PSME4Q14997 1843 aa23.73■■□□□ 1.39
UPF1-209ENST00000600310 EPS15P42566 896 aa23.72■■□□□ 1.39
UPF1-209ENST00000600310 RASGRF1Q13972 1273 aa23.72■■□□□ 1.39
UPF1-209ENST00000600310 MFSD14BQ5SR56 506 aa23.72■■□□□ 1.39
UPF1-209ENST00000600310 TBC1D22AQ8WUA7 517 aa23.72■■□□□ 1.39
UPF1-209ENST00000600310 COL1A1P02452 1464 aaPredicted RBP23.71■■□□□ 1.39
UPF1-209ENST00000600310 PDS5AQ29RF7 1337 aaKnown RBP23.71■■□□□ 1.39
UPF1-209ENST00000600310 TTC39AQ5SRH9 613 aa23.71■■□□□ 1.39
UPF1-209ENST00000600310 MICALL2Q8IY33 904 aa23.71■■□□□ 1.39
UPF1-209ENST00000600310 WDR66Q8TBY9 1149 aa23.71■■□□□ 1.39
UPF1-209ENST00000600310 TAF1DQ9H5J8 278 aaPredicted RBP23.71■■□□□ 1.39
UPF1-209ENST00000600310 H7C1D1 291 aa23.7■■□□□ 1.38
UPF1-209ENST00000600310 KIF3CO14782 793 aa23.7■■□□□ 1.38
UPF1-209ENST00000600310 USP17L8P0C7I0 530 aa23.7■■□□□ 1.38
UPF1-209ENST00000600310 EPHX2P34913 555 aa23.7■■□□□ 1.38
UPF1-209ENST00000600310 ANKRD45Q5TZF3 282 aa23.7■■□□□ 1.38
UPF1-209ENST00000600310 BCL11AQ9H165 835 aa23.7■■□□□ 1.38
UPF1-209ENST00000600310 ZNF646O15015 1829 aaPredicted RBP23.69■■□□□ 1.38
UPF1-209ENST00000600310 SHTN1A0MZ66 631 aa23.69■■□□□ 1.38
UPF1-209ENST00000600310 MMP14P50281 582 aa23.69■■□□□ 1.38
UPF1-209ENST00000600310 ZNF280AP59817 542 aaPredicted RBP23.69■■□□□ 1.38
UPF1-209ENST00000600310 SCARF1Q14162 830 aa23.69■■□□□ 1.38
UPF1-209ENST00000600310 ADARB2Q9NS39 739 aaKnown RBP23.69■■□□□ 1.38
UPF1-209ENST00000600310 HMG20BQ9P0W2 317 aa23.69■■□□□ 1.38
UPF1-209ENST00000600310 SALL1Q9NSC2 1324 aa23.68■■□□□ 1.38
UPF1-209ENST00000600310 MCAMP43121 646 aa23.68■■□□□ 1.38
UPF1-209ENST00000600310 KIAA0825Q8IV33 1275 aa23.68■■□□□ 1.38
UPF1-209ENST00000600310 SPATA5Q8NB90 893 aa23.68■■□□□ 1.38
UPF1-209ENST00000600310 SUGT1Q9Y2Z0 365 aa23.68■■□□□ 1.38
UPF1-209ENST00000600310 SCN4AP35499 1836 aa23.68■■□□□ 1.38
UPF1-209ENST00000600310 OGFOD1Q8N543 542 aa23.67■■□□□ 1.38
UPF1-209ENST00000600310 ZBTB47Q9UFB7 747 aaPredicted RBP23.67■■□□□ 1.38
UPF1-209ENST00000600310 PNMA8AQ86V59 439 aaPredicted RBP23.66■■□□□ 1.38
UPF1-209ENST00000600310 HDAC9Q9UKV0 1011 aa23.66■■□□□ 1.38
UPF1-209ENST00000600310 GRIK5Q16478 980 aa23.65■■□□□ 1.38
UPF1-209ENST00000600310 PI16Q6UXB8 463 aa23.65■■□□□ 1.38
UPF1-209ENST00000600310 USP50Q70EL3 339 aaPredicted RBP23.65■■□□□ 1.38
UPF1-209ENST00000600310 ZGPATQ8N5A5 531 aaKnown RBP23.65■■□□□ 1.38
UPF1-209ENST00000600310 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.65■■□□□ 1.38
UPF1-209ENST00000600310 F8W031 263 aaPredicted RBP23.64■■□□□ 1.37
UPF1-209ENST00000600310 B4GALNT3Q6L9W6 998 aa23.64■■□□□ 1.37
UPF1-209ENST00000600310 SAMD7Q7Z3H4 446 aa23.64■■□□□ 1.37
UPF1-209ENST00000600310 C16orf71Q8IYS4 520 aaPredicted RBP23.64■■□□□ 1.37
UPF1-209ENST00000600310 TRPM4Q8TD43 1214 aa23.64■■□□□ 1.37
UPF1-209ENST00000600310 TTF2Q9UNY4 1162 aaKnown RBP23.64■■□□□ 1.37
UPF1-209ENST00000600310 HSPA6P17066 643 aa23.63■■□□□ 1.37
UPF1-209ENST00000600310 NUCB1Q02818 461 aa23.63■■□□□ 1.37
UPF1-209ENST00000600310 MYOZ2Q9NPC6 264 aa23.63■■□□□ 1.37
UPF1-209ENST00000600310 SNRKQ9NRH2 765 aa23.63■■□□□ 1.37
UPF1-209ENST00000600310 EGFRP00533 1210 aa23.62■■□□□ 1.37
UPF1-209ENST00000600310 ATP5JP18859 108 aa23.62■■□□□ 1.37
UPF1-209ENST00000600310 ZAP70P43403 619 aa23.62■■□□□ 1.37
UPF1-209ENST00000600310 HIRAP54198 1017 aaPredicted RBP23.62■■□□□ 1.37
UPF1-209ENST00000600310 KIF4BQ2VIQ3 1234 aa23.62■■□□□ 1.37
UPF1-209ENST00000600310 TBC1D10BQ4KMP7 808 aaPredicted RBP23.62■■□□□ 1.37
UPF1-209ENST00000600310 EAPPQ56P03 285 aaPredicted RBP23.62■■□□□ 1.37
UPF1-209ENST00000600310 RBM26Q5T8P6 1007 aaKnown RBP23.62■■□□□ 1.37
UPF1-209ENST00000600310 ERICH6BQ5W0A0 696 aa23.62■■□□□ 1.37
UPF1-209ENST00000600310 CHD1LQ86WJ1 897 aa23.62■■□□□ 1.37
UPF1-209ENST00000600310 ECHDC1Q9NTX5 307 aa23.62■■□□□ 1.37
UPF1-209ENST00000600310 LDHBP07195 334 aaKnown RBP23.61■■□□□ 1.37
UPF1-209ENST00000600310 PRDX5P30044 214 aa23.61■■□□□ 1.37
UPF1-209ENST00000600310 HDLBPQ00341 1268 aaKnown RBP23.61■■□□□ 1.37
UPF1-209ENST00000600310 SPTY2D1Q68D10 685 aaPredicted RBP23.61■■□□□ 1.37
UPF1-209ENST00000600310 OTUD7AQ8TE49 926 aaPredicted RBP23.61■■□□□ 1.37
UPF1-209ENST00000600310 GPATCH3Q96I76 525 aa23.61■■□□□ 1.37
UPF1-209ENST00000600310 MRIQ9BWK5 157 aa23.61■■□□□ 1.37
UPF1-209ENST00000600310 LNPKQ9C0E8 428 aa23.61■■□□□ 1.37
UPF1-209ENST00000600310 ABCF2Q9UG63 623 aa23.61■■□□□ 1.37
UPF1-209ENST00000600310 MAST3O60307 1309 aa23.6■■□□□ 1.37
UPF1-209ENST00000600310 TOMM70O94826 608 aa23.6■■□□□ 1.37
UPF1-209ENST00000600310 CYP2E1P05181 493 aaPredicted RBP23.6■■□□□ 1.37
UPF1-209ENST00000600310 TBC1D9Q6ZT07 1266 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms