RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 DNAJC5BQ9UF47 199 aa23.18■■□□□ 1.3
UPF1-207ENST00000599848 PDE8AO60658 829 aa23.18■■□□□ 1.3
UPF1-207ENST00000599848 CEP63Q96MT8 703 aa23.18■■□□□ 1.3
UPF1-207ENST00000599848 RPRD2Q5VT52 1461 aaKnown RBP23.17■■□□□ 1.3
UPF1-207ENST00000599848 HAUS3Q68CZ6 603 aa23.17■■□□□ 1.3
UPF1-207ENST00000599848 STMN4Q9H169 189 aaPredicted RBP23.17■■□□□ 1.3
UPF1-207ENST00000599848 NOX5Q96PH1 765 aa23.17■■□□□ 1.3
UPF1-207ENST00000599848 WDR44Q5JSH3 913 aa23.17■■□□□ 1.3
UPF1-207ENST00000599848 USP25Q9UHP3 1055 aa23.17■■□□□ 1.3
UPF1-207ENST00000599848 RNMTO43148 476 aaKnown RBP23.17■■□□□ 1.3
UPF1-207ENST00000599848 UBE4AQ14139 1066 aa23.17■■□□□ 1.3
UPF1-207ENST00000599848 NOC2LQ9Y3T9 749 aaKnown RBP23.17■■□□□ 1.3
UPF1-207ENST00000599848 ATP2A2P16615 1042 aaKnown RBP23.16■■□□□ 1.3
UPF1-207ENST00000599848 ARL1P40616 181 aaPredicted RBP23.16■■□□□ 1.3
UPF1-207ENST00000599848 BIRC2Q13490 618 aa23.16■■□□□ 1.3
UPF1-207ENST00000599848 CABLES1Q8TDN4 633 aa23.16■■□□□ 1.3
UPF1-207ENST00000599848 EIF4A2Q14240 407 aaKnown RBP23.16■■□□□ 1.3
UPF1-207ENST00000599848 DDX21Q9NR30 783 aaKnown RBP eCLIP23.16■■□□□ 1.3
UPF1-207ENST00000599848 PUM3Q15397 648 aaKnown RBP23.16■■□□□ 1.3
UPF1-207ENST00000599848 CCDC65Q8IXS2 484 aa23.16■■□□□ 1.3
UPF1-207ENST00000599848 PLBD2Q8NHP8 589 aa23.16■■□□□ 1.3
UPF1-207ENST00000599848 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.16■■□□□ 1.3
UPF1-207ENST00000599848 DLGAP5Q15398 846 aa23.15■■□□□ 1.3
UPF1-207ENST00000599848 MCTP2Q6DN12 878 aa23.15■■□□□ 1.3
UPF1-207ENST00000599848 MAGEB6Q8N7X4 407 aa23.15■■□□□ 1.3
UPF1-207ENST00000599848 FNBP1Q96RU3 617 aa23.15■■□□□ 1.3
UPF1-207ENST00000599848 MMRN2Q9H8L6 949 aa23.15■■□□□ 1.3
UPF1-207ENST00000599848 NR1I2O75469 434 aa23.15■■□□□ 1.3
UPF1-207ENST00000599848 SMCR8Q8TEV9 937 aaPredicted RBP23.15■■□□□ 1.3
UPF1-207ENST00000599848 CPLX3Q8WVH0 158 aa23.15■■□□□ 1.3
UPF1-207ENST00000599848 FAM212AQ96EL1 285 aa23.15■■□□□ 1.3
UPF1-207ENST00000599848 FAM107BQ9H098 131 aa23.15■■□□□ 1.3
UPF1-207ENST00000599848 STX10O60499 249 aa23.14■■□□□ 1.3
UPF1-207ENST00000599848 URI1O94763 535 aaPredicted RBP23.14■■□□□ 1.3
UPF1-207ENST00000599848 THOC2Q8NI27 1593 aaKnown RBP23.14■■□□□ 1.3
UPF1-207ENST00000599848 STRN3Q13033 797 aa23.14■■□□□ 1.3
UPF1-207ENST00000599848 TTC16Q8NEE8 873 aa23.14■■□□□ 1.3
UPF1-207ENST00000599848 LZTS2Q9BRK4 669 aa23.14■■□□□ 1.3
UPF1-207ENST00000599848 TRIM6Q9C030 488 aaPredicted RBP23.14■■□□□ 1.3
UPF1-207ENST00000599848 KIFAP3Q92845 792 aa23.14■■□□□ 1.29
UPF1-207ENST00000599848 RAB3GAP1Q15042 981 aa23.13■■□□□ 1.29
UPF1-207ENST00000599848 CEP112Q8N8E3 955 aa23.13■■□□□ 1.29
UPF1-207ENST00000599848 TXNDC16Q9P2K2 825 aa23.13■■□□□ 1.29
UPF1-207ENST00000599848 JAKMIP2Q96AA8 810 aa23.13■■□□□ 1.29
UPF1-207ENST00000599848 CEP128Q6ZU80 1094 aa23.13■■□□□ 1.29
UPF1-207ENST00000599848 SYCE3A1L190 88 aa23.13■■□□□ 1.29
UPF1-207ENST00000599848 RTEL1Q9NZ71 1219 aa23.13■■□□□ 1.29
UPF1-207ENST00000599848 UBE2HP62256 183 aa23.12■■□□□ 1.29
UPF1-207ENST00000599848 DTHD1Q6ZMT9 781 aa23.12■■□□□ 1.29
UPF1-207ENST00000599848 CNKSR1Q969H4 720 aa23.12■■□□□ 1.29
UPF1-207ENST00000599848 FRMD4BQ9Y2L6 1034 aa23.12■■□□□ 1.29
UPF1-207ENST00000599848 ARID4AP29374 1257 aaPredicted RBP23.12■■□□□ 1.29
UPF1-207ENST00000599848 PPP2R5BQ15173 497 aa23.12■■□□□ 1.29
UPF1-207ENST00000599848 ANKRD44Q8N8A2 993 aa23.12■■□□□ 1.29
UPF1-207ENST00000599848 ANXA1P04083 346 aa23.12■■□□□ 1.29
UPF1-207ENST00000599848 DDX23Q9BUQ8 820 aaKnown RBP23.12■■□□□ 1.29
UPF1-207ENST00000599848 ZMYND15Q9H091 742 aa23.12■■□□□ 1.29
UPF1-207ENST00000599848 HELLSQ9NRZ9 838 aa23.12■■□□□ 1.29
UPF1-207ENST00000599848 MRPS27Q92552 414 aaKnown RBP23.11■■□□□ 1.29
UPF1-207ENST00000599848 TRPC5Q9UL62 973 aaPredicted RBP23.11■■□□□ 1.29
UPF1-207ENST00000599848 ITSN2Q9NZM3 1697 aa23.11■■□□□ 1.29
UPF1-207ENST00000599848 ABCC1P33527 1531 aa23.11■■□□□ 1.29
UPF1-207ENST00000599848 DNA2P51530 1060 aa23.11■■□□□ 1.29
UPF1-207ENST00000599848 KMT5BQ4FZB7 885 aa23.11■■□□□ 1.29
UPF1-207ENST00000599848 RBM8AQ9Y5S9 174 aaKnown RBP23.11■■□□□ 1.29
UPF1-207ENST00000599848 CSRNP2Q9H175 543 aa23.11■■□□□ 1.29
UPF1-207ENST00000599848 FAM83GA6ND36 823 aa23.1■■□□□ 1.29
UPF1-207ENST00000599848 HOXC9P31274 260 aa23.1■■□□□ 1.29
UPF1-207ENST00000599848 PLCD1P51178 756 aa23.1■■□□□ 1.29
UPF1-207ENST00000599848 BRAPQ7Z569 592 aa23.1■■□□□ 1.29
UPF1-207ENST00000599848 MPNDQ8N594 471 aa23.1■■□□□ 1.29
UPF1-207ENST00000599848 EEF2P13639 858 aaKnown RBP23.1■■□□□ 1.29
UPF1-207ENST00000599848 UVSSAQ2YD98 709 aa23.1■■□□□ 1.29
UPF1-207ENST00000599848 GPATCH8Q9UKJ3 1502 aaKnown RBP23.1■■□□□ 1.29
UPF1-207ENST00000599848 TACC1O75410 805 aa23.09■■□□□ 1.29
UPF1-207ENST00000599848 KRT83P78385 493 aa23.09■■□□□ 1.29
UPF1-207ENST00000599848 HDAC1Q13547 482 aaPredicted RBP23.09■■□□□ 1.29
UPF1-207ENST00000599848 FAM169AQ9Y6X4 670 aa23.09■■□□□ 1.29
UPF1-207ENST00000599848 TUBB4AP04350 444 aa23.09■■□□□ 1.29
UPF1-207ENST00000599848 SLAIN2Q9P270 581 aa23.09■■□□□ 1.29
UPF1-207ENST00000599848 ODF2LQ9ULJ1 636 aa23.09■■□□□ 1.29
UPF1-207ENST00000599848 PIK3C2GO75747 1445 aa23.09■■□□□ 1.29
UPF1-207ENST00000599848 ZNF608Q9ULD9 1512 aaPredicted RBP23.09■■□□□ 1.29
UPF1-207ENST00000599848 EAPPQ56P03 285 aaPredicted RBP23.08■■□□□ 1.29
UPF1-207ENST00000599848 A0A1W2PRG0 241 aa23.08■■□□□ 1.29
UPF1-207ENST00000599848 TRPC3Q13507 836 aa23.08■■□□□ 1.29
UPF1-207ENST00000599848 FAM98CQ17RN3 349 aaKnown RBP23.08■■□□□ 1.29
UPF1-207ENST00000599848 TMC6Q7Z403 805 aa23.08■■□□□ 1.29
UPF1-207ENST00000599848 JARID2Q92833 1246 aaPredicted RBP23.08■■□□□ 1.29
UPF1-207ENST00000599848 RAPGEF6Q8TEU7 1601 aa23.08■■□□□ 1.29
UPF1-207ENST00000599848 PPIP5K2O43314 1243 aa23.08■■□□□ 1.29
UPF1-207ENST00000599848 ATL3Q6DD88 541 aa23.08■■□□□ 1.29
UPF1-207ENST00000599848 PANK2Q9BZ23 570 aa23.08■■□□□ 1.29
UPF1-207ENST00000599848 JADE2Q9NQC1 790 aa23.08■■□□□ 1.29
UPF1-207ENST00000599848 ATP10AO60312 1499 aa23.08■■□□□ 1.28
UPF1-207ENST00000599848 NLRX1Q86UT6 975 aa23.08■■□□□ 1.28
UPF1-207ENST00000599848 DCPSQ96C86 337 aaKnown RBP23.08■■□□□ 1.28
UPF1-207ENST00000599848 VIMP08670 466 aaKnown RBP23.07■■□□□ 1.28
UPF1-207ENST00000599848 MTHFSDQ2M296 383 aaKnown RBP23.07■■□□□ 1.28
UPF1-207ENST00000599848 NSMCE1Q8WV22 266 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms