RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CALD1Q05682 793 aaKnown RBP11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 NEXNQ0ZGT2 675 aa11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 TWISTNBQ3B726 338 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 TTLL5Q6EMB2 1281 aa11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 OGFOD1Q8N543 542 aa11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 CERS5Q8N5B7 392 aa11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 STK31Q9BXU1 1019 aa11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 LAMA2P24043 3122 aaKnown RBP11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 EYSQ5T1H1 3165 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 CLRN2A0PK11 232 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 GPR25O00155 361 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 EN2P19622 333 aaPredicted RBP11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 IGHMBP2P38935 993 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 CASP7P55210 303 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 FKBP1BP68106 108 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 CHRNDQ07001 517 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 GCKRQ14397 625 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 STRIP1Q5VSL9 837 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 CLMNQ96JQ2 1002 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 COA1Q9GZY4 146 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 ANGEL1Q9UNK9 670 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 PRUNE2Q8WUY3 3088 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 A0A1B0GUL6 1792 aa11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 RBBP6Q7Z6E9 1792 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-220ENST00000599716 SSC5DA1L4H1 1573 aa11.07□□□□□ -0.64
SHKBP1-220ENST00000599716 F6X3S4 739 aa11.07□□□□□ -0.64
SHKBP1-220ENST00000599716 KCNJ4P48050 445 aa11.07□□□□□ -0.64
SHKBP1-220ENST00000599716 FLIIQ13045 1269 aa11.07□□□□□ -0.64
SHKBP1-220ENST00000599716 FKBP5Q13451 457 aaPredicted RBP11.07□□□□□ -0.64
SHKBP1-220ENST00000599716 WWC1Q8IX03 1113 aa11.07□□□□□ -0.64
SHKBP1-220ENST00000599716 MPHOSPH8Q99549 860 aa11.07□□□□□ -0.64
SHKBP1-220ENST00000599716 CHMP3Q9Y3E7 222 aa11.07□□□□□ -0.64
SHKBP1-220ENST00000599716 PLIN1O60240 522 aa11.06□□□□□ -0.64
SHKBP1-220ENST00000599716 FKTNO75072 461 aa11.06□□□□□ -0.64
SHKBP1-220ENST00000599716 TM4SF4P48230 202 aa11.06□□□□□ -0.64
SHKBP1-220ENST00000599716 EPHA10Q5JZY3 1008 aa11.06□□□□□ -0.64
SHKBP1-220ENST00000599716 ZBED3Q96IU2 234 aaPredicted RBP11.06□□□□□ -0.64
SHKBP1-220ENST00000599716 ZNF594Q96JF6 807 aaPredicted RBP11.06□□□□□ -0.64
SHKBP1-220ENST00000599716 CD209Q9NNX6 404 aa11.06□□□□□ -0.64
SHKBP1-220ENST00000599716 LEMD3Q9Y2U8 911 aa11.06□□□□□ -0.64
SHKBP1-220ENST00000599716 IRS2Q9Y4H2 1338 aa11.06□□□□□ -0.64
SHKBP1-220ENST00000599716 CSF1RP07333 972 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 NF2P35240 595 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 SPRYD7Q5W111 196 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 CDAN1Q8IWY9 1227 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 DNAAF4Q8WXU2 420 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 ARMC5Q96C12 935 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 DEFB129Q9H1M3 183 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 PRO3102Q9H379 93 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 MYO3BQ8WXR4 1341 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 FANCIQ9NVI1 1328 aa11.05□□□□□ -0.64
SHKBP1-220ENST00000599716 A0A1W2PPC1 479 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 IGF2BP3O00425 579 aaKnown RBP eCLIP11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 FOXO4P98177 505 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 CAP1Q01518 475 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 DLGAP5Q15398 846 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 CFAP100Q494V2 611 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 LDLRAD1Q5T700 205 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 NBPF12Q5TAG4 269 aaPredicted RBP11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 ARMC9Q7Z3E5 817 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 APOBEC3FQ8IUX4 373 aaKnown RBP11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 PRMT6Q96LA8 375 aaPredicted RBP11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 PLA2G12BQ9BX93 195 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 CFHR5Q9BXR6 569 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 ANKRD2Q9GZV1 360 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 VEZTQ9HBM0 779 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 STXBP5LQ9Y2K9 1186 aa11.04□□□□□ -0.64
SHKBP1-220ENST00000599716 ANKRD18BA2A2Z9 1011 aa11.03□□□□□ -0.64
SHKBP1-220ENST00000599716 GJA5P36382 358 aa11.03□□□□□ -0.64
SHKBP1-220ENST00000599716 EXOSC9Q06265 439 aaKnown RBP11.03□□□□□ -0.64
SHKBP1-220ENST00000599716 LINS1Q8NG48 757 aa11.03□□□□□ -0.64
SHKBP1-220ENST00000599716 SPINK5Q9NQ38 1064 aaPredicted RBP11.03□□□□□ -0.64
SHKBP1-220ENST00000599716 ECM29Q5VYK3 1845 aa11.02□□□□□ -0.64
SHKBP1-220ENST00000599716 RBM5P52756 815 aaKnown RBP eCLIP11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 SREBF2Q12772 1141 aa11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 LMBR1LQ6UX01 489 aa11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 SLC10A4Q96EP9 437 aa11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 WNK4Q96J92 1243 aa11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 TMEM106CQ9BVX2 250 aa11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 MYH16Q9H6N6 1097 aa11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 TRIM17Q9Y577 477 aa11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 OTOFQ9HC10 1997 aa11.02□□□□□ -0.65
SHKBP1-220ENST00000599716 SPDYE2BA6NHP3 402 aa11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 SOX1O00570 391 aaPredicted RBP11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 VAMP4O75379 141 aa11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 SPDYE6P0CI01 402 aa11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 COL9A1P20849 921 aa11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 IFIT5Q13325 482 aaKnown RBP11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 GRIK5Q16478 980 aa11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 GPR153Q6NV75 609 aa11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 OTOP1Q7RTM1 612 aa11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 IFNL1Q8IU54 200 aa11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 CD99L2Q8TCZ2 262 aa11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 PUS3Q9BZE2 481 aaKnown RBP11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 IQSEC3Q9UPP2 1182 aaPredicted RBP11.01□□□□□ -0.65
SHKBP1-220ENST00000599716 USP2O75604 605 aaPredicted RBP11□□□□□ -0.65
SHKBP1-220ENST00000599716 ECM2O94769 699 aaPredicted RBP11□□□□□ -0.65
SHKBP1-220ENST00000599716 PLA2G5P39877 138 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 GYG1P46976 350 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms