RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ADORA1P30542 326 aa20.3■□□□□ 0.84
SHKBP1-219ENST00000599575 GTF2IP78347 998 aa20.3■□□□□ 0.84
SHKBP1-219ENST00000599575 IL1RAPL2Q9NP60 686 aa20.3■□□□□ 0.84
SHKBP1-219ENST00000599575 KCNQ5Q9NR82 932 aa20.3■□□□□ 0.84
SHKBP1-219ENST00000599575 DBNLQ9UJU6 430 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-219ENST00000599575 ARAP2Q8WZ64 1704 aa20.3■□□□□ 0.84
SHKBP1-219ENST00000599575 APBB1O00213 710 aa20.29■□□□□ 0.84
SHKBP1-219ENST00000599575 PHKA1P46020 1223 aa20.29■□□□□ 0.84
SHKBP1-219ENST00000599575 ZGPATQ8N5A5 531 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-219ENST00000599575 GMLQ99445 158 aa20.29■□□□□ 0.84
SHKBP1-219ENST00000599575 DBNDD2Q9BQY9 259 aa20.29■□□□□ 0.84
SHKBP1-219ENST00000599575 GPRC5DQ9NZD1 345 aa20.29■□□□□ 0.84
SHKBP1-219ENST00000599575 SALL1Q9NSC2 1324 aa20.28■□□□□ 0.84
SHKBP1-219ENST00000599575 GMPSP49915 693 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-219ENST00000599575 OGFOD1Q8N543 542 aa20.28■□□□□ 0.84
SHKBP1-219ENST00000599575 ZNF784Q8NCA9 323 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-219ENST00000599575 HACL1Q9UJ83 578 aa20.28■□□□□ 0.84
SHKBP1-219ENST00000599575 WDR90Q96KV7 1748 aa20.27■□□□□ 0.84
SHKBP1-219ENST00000599575 H7C1D1 291 aa20.27■□□□□ 0.84
SHKBP1-219ENST00000599575 SCNN1DP51172 638 aa20.27■□□□□ 0.84
SHKBP1-219ENST00000599575 TTC39AQ5SRH9 613 aa20.27■□□□□ 0.84
SHKBP1-219ENST00000599575 PNMA8AQ86V59 439 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-219ENST00000599575 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.27■□□□□ 0.84
SHKBP1-219ENST00000599575 GPATCH3Q96I76 525 aa20.27■□□□□ 0.84
SHKBP1-219ENST00000599575 CCDC8Q9H0W5 538 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-219ENST00000599575 IGHDP01880 384 aa20.26■□□□□ 0.83
SHKBP1-219ENST00000599575 USP17L8P0C7I0 530 aa20.26■□□□□ 0.83
SHKBP1-219ENST00000599575 RASGRF1Q13972 1273 aa20.26■□□□□ 0.83
SHKBP1-219ENST00000599575 MFSD14BQ5SR56 506 aa20.26■□□□□ 0.83
SHKBP1-219ENST00000599575 FBXW7Q969H0 707 aa20.26■□□□□ 0.83
SHKBP1-219ENST00000599575 HDAC9Q9UKV0 1011 aa20.26■□□□□ 0.83
SHKBP1-219ENST00000599575 ZNF280AP59817 542 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-219ENST00000599575 ANKRD45Q5TZF3 282 aa20.25■□□□□ 0.83
SHKBP1-219ENST00000599575 SPATA5Q8NB90 893 aa20.25■□□□□ 0.83
SHKBP1-219ENST00000599575 MRIQ9BWK5 157 aa20.25■□□□□ 0.83
SHKBP1-219ENST00000599575 ADARB2Q9NS39 739 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-219ENST00000599575 CNOT7Q9UIV1 285 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-219ENST00000599575 MAST3O60307 1309 aa20.25■□□□□ 0.83
SHKBP1-219ENST00000599575 SPTY2D1Q68D10 685 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-219ENST00000599575 TMED8Q6PL24 325 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-219ENST00000599575 USP50Q70EL3 339 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-219ENST00000599575 TLR7Q9NYK1 1049 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-219ENST00000599575 IQSEC3Q9UPP2 1182 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-219ENST00000599575 ZBTB12Q9Y330 459 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-219ENST00000599575 PSME4Q14997 1843 aa20.24■□□□□ 0.83
SHKBP1-219ENST00000599575 SCN9AQ15858 1988 aa20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 POTECB2RU33 542 aa20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 ATP5JP18859 108 aa20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 HDLBPQ00341 1268 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 NUCB1Q02818 461 aa20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 CHAF1AQ13111 956 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 ZNF526Q8TF50 670 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 TAF1DQ9H5J8 278 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 RRAGCQ9HB90 399 aa20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 ECHDC1Q9NTX5 307 aa20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 HMG20BQ9P0W2 317 aa20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 TTC41PQ6P2S7 1318 aa20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 SCN4AP35499 1836 aa20.23■□□□□ 0.83
SHKBP1-219ENST00000599575 SMARCA5O60264 1052 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-219ENST00000599575 EPHX2P34913 555 aa20.22■□□□□ 0.83
SHKBP1-219ENST00000599575 MCAMP43121 646 aa20.22■□□□□ 0.83
SHKBP1-219ENST00000599575 MICALL2Q8IY33 904 aa20.22■□□□□ 0.83
SHKBP1-219ENST00000599575 CERS5Q8N5B7 392 aa20.22■□□□□ 0.83
SHKBP1-219ENST00000599575 NMRK2Q9NPI5 230 aa20.22■□□□□ 0.83
SHKBP1-219ENST00000599575 CHD1LQ86WJ1 897 aa20.21■□□□□ 0.83
SHKBP1-219ENST00000599575 ZC3H15Q8WU90 426 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-219ENST00000599575 SERPINA10Q9UK55 444 aa20.21■□□□□ 0.83
SHKBP1-219ENST00000599575 ERC2O15083 957 aa20.2■□□□□ 0.82
SHKBP1-219ENST00000599575 EPS15P42566 896 aa20.2■□□□□ 0.82
SHKBP1-219ENST00000599575 TTF1Q15361 905 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-219ENST00000599575 CENPQQ7L2Z9 268 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-219ENST00000599575 KIAA0825Q8IV33 1275 aa20.2■□□□□ 0.82
SHKBP1-219ENST00000599575 SLF2Q8IX21 1173 aa20.2■□□□□ 0.82
SHKBP1-219ENST00000599575 C16orf71Q8IYS4 520 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-219ENST00000599575 MTMR14Q8NCE2 650 aa20.2■□□□□ 0.82
SHKBP1-219ENST00000599575 COL1A1P02452 1464 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-219ENST00000599575 LDHBP07195 334 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-219ENST00000599575 MYOZ2Q9NPC6 264 aa20.19■□□□□ 0.82
SHKBP1-219ENST00000599575 TTF2Q9UNY4 1162 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-219ENST00000599575 MX1P20591 662 aa20.18■□□□□ 0.82
SHKBP1-219ENST00000599575 SCARF1Q14162 830 aa20.18■□□□□ 0.82
SHKBP1-219ENST00000599575 CCDC136Q96JN2 1154 aa20.18■□□□□ 0.82
SHKBP1-219ENST00000599575 MXD3Q9BW11 206 aa20.18■□□□□ 0.82
SHKBP1-219ENST00000599575 STAP2Q9UGK3 403 aa20.18■□□□□ 0.82
SHKBP1-219ENST00000599575 JAG2Q9Y219 1238 aa20.18■□□□□ 0.82
SHKBP1-219ENST00000599575 KIF3CO14782 793 aa20.17■□□□□ 0.82
SHKBP1-219ENST00000599575 GLRX3O76003 335 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-219ENST00000599575 HHIPL2Q6UWX4 724 aa20.17■□□□□ 0.82
SHKBP1-219ENST00000599575 ERICH6Q7L0X2 663 aa20.17■□□□□ 0.82
SHKBP1-219ENST00000599575 LDHDQ86WU2 507 aa20.17■□□□□ 0.82
SHKBP1-219ENST00000599575 HAUS7Q99871 368 aa20.17■□□□□ 0.82
SHKBP1-219ENST00000599575 SALL3Q9BXA9 1300 aa20.17■□□□□ 0.82
SHKBP1-219ENST00000599575 ZNF646O15015 1829 aaPredicted RBP20.16■□□□□ 0.82
SHKBP1-219ENST00000599575 TOMM70O94826 608 aa20.16■□□□□ 0.82
SHKBP1-219ENST00000599575 GSTO1P78417 241 aa20.16■□□□□ 0.82
SHKBP1-219ENST00000599575 KIF4BQ2VIQ3 1234 aa20.16■□□□□ 0.82
SHKBP1-219ENST00000599575 B4GALNT3Q6L9W6 998 aa20.16■□□□□ 0.82
SHKBP1-219ENST00000599575 TEKT1Q969V4 418 aa20.16■□□□□ 0.82
SHKBP1-219ENST00000599575 LNPKQ9C0E8 428 aa20.16■□□□□ 0.82
SHKBP1-219ENST00000599575 PPP4R2Q9NY27 417 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms