RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 FKBP1AP62942 108 aaKnown RBP17.18■□□□□ 0.34
UPF1-205ENST00000598209 C20orf194Q5TEA3 1177 aa17.18■□□□□ 0.34
UPF1-205ENST00000598209 KIAA0825Q8IV33 1275 aa17.18■□□□□ 0.34
UPF1-205ENST00000598209 OGFOD1Q8N543 542 aa17.18■□□□□ 0.34
UPF1-205ENST00000598209 CERS5Q8N5B7 392 aa17.18■□□□□ 0.34
UPF1-205ENST00000598209 SSH3Q8TE77 659 aa17.18■□□□□ 0.34
UPF1-205ENST00000598209 MYOZ2Q9NPC6 264 aa17.18■□□□□ 0.34
UPF1-205ENST00000598209 IQSEC3Q9UPP2 1182 aaPredicted RBP17.18■□□□□ 0.34
UPF1-205ENST00000598209 TFCP2Q12800 502 aa17.17■□□□□ 0.34
UPF1-205ENST00000598209 G3BP1Q13283 466 aaKnown RBP eCLIP17.17■□□□□ 0.341e-6■□□□□ 10.2
UPF1-205ENST00000598209 HDAC9Q9UKV0 1011 aa17.17■□□□□ 0.34
UPF1-205ENST00000598209 FRAT2O75474 233 aaPredicted RBP17.16■□□□□ 0.34
UPF1-205ENST00000598209 MMP14P50281 582 aa17.16■□□□□ 0.34
UPF1-205ENST00000598209 CEP85Q6P2H3 762 aa17.16■□□□□ 0.34
UPF1-205ENST00000598209 GLIS2Q9BZE0 524 aaPredicted RBP17.16■□□□□ 0.34
UPF1-205ENST00000598209 ECM29Q5VYK3 1845 aa17.16■□□□□ 0.34
UPF1-205ENST00000598209 F8W031 263 aaPredicted RBP17.15■□□□□ 0.34
UPF1-205ENST00000598209 TRAF5O00463 557 aa17.15■□□□□ 0.34
UPF1-205ENST00000598209 FMR1Q06787 632 aaKnown RBP eCLIP17.15■□□□□ 0.342e-6■■■□□ 17.4
UPF1-205ENST00000598209 CHAF1AQ13111 956 aaPredicted RBP17.15■□□□□ 0.34
UPF1-205ENST00000598209 SCARF1Q14162 830 aa17.15■□□□□ 0.34
UPF1-205ENST00000598209 MFSD14BQ5SR56 506 aa17.15■□□□□ 0.34
UPF1-205ENST00000598209 CDC37L1Q7L3B6 337 aa17.15■□□□□ 0.34
UPF1-205ENST00000598209 DCPSQ96C86 337 aaKnown RBP17.15■□□□□ 0.34
UPF1-205ENST00000598209 CHMP4BQ9H444 224 aaKnown RBP17.15■□□□□ 0.34
UPF1-205ENST00000598209 ZBTB40Q9NUA8 1239 aa17.15■□□□□ 0.34
UPF1-205ENST00000598209 GGA3Q9NZ52 723 aa17.15■□□□□ 0.34
UPF1-205ENST00000598209 AKAP2Q9Y2D5 859 aa17.15■□□□□ 0.34
UPF1-205ENST00000598209 ASTN2O75129 1339 aaPredicted RBP17.15■□□□□ 0.34
UPF1-205ENST00000598209 SURF6O75683 361 aaKnown RBP17.14■□□□□ 0.33
UPF1-205ENST00000598209 ADORA1P30542 326 aa17.14■□□□□ 0.33
UPF1-205ENST00000598209 TIMM10P62072 90 aa17.14■□□□□ 0.33
UPF1-205ENST00000598209 OS9Q13438 667 aaPredicted RBP17.14■□□□□ 0.33
UPF1-205ENST00000598209 CREBZFQ9NS37 354 aa17.14■□□□□ 0.33
UPF1-205ENST00000598209 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.14■□□□□ 0.33
UPF1-205ENST00000598209 A0A1B0GUL7 405 aa17.13■□□□□ 0.33
UPF1-205ENST00000598209 TMEM88BA6NKF7 163 aa17.13■□□□□ 0.33
UPF1-205ENST00000598209 NBPF9Q3BBW0 867 aa17.13■□□□□ 0.33
UPF1-205ENST00000598209 ANGEL2Q5VTE6 544 aaKnown RBP17.13■□□□□ 0.33
UPF1-205ENST00000598209 KRT26Q7Z3Y9 468 aa17.13■□□□□ 0.33
UPF1-205ENST00000598209 USP48Q86UV5 1035 aa17.13■□□□□ 0.33
UPF1-205ENST00000598209 NOP58Q9Y2X3 529 aaKnown RBP17.13■□□□□ 0.33
UPF1-205ENST00000598209 WNT10BO00744 389 aa17.12■□□□□ 0.33
UPF1-205ENST00000598209 PHKA1P46020 1223 aa17.12■□□□□ 0.33
UPF1-205ENST00000598209 RRP1P56182 461 aaKnown RBP17.12■□□□□ 0.33
UPF1-205ENST00000598209 DNAJC5GQ8N7S2 189 aa17.12■□□□□ 0.33
UPF1-205ENST00000598209 TBC1D22AQ8WUA7 517 aa17.12■□□□□ 0.33
UPF1-205ENST00000598209 GNL3LQ9NVN8 582 aaKnown RBP17.12■□□□□ 0.33
UPF1-205ENST00000598209 COL1A1P02452 1464 aaPredicted RBP17.12■□□□□ 0.33
UPF1-205ENST00000598209 ADM5C9JUS6 153 aa17.11■□□□□ 0.33
UPF1-205ENST00000598209 DLGAP5Q15398 846 aa17.11■□□□□ 0.33
UPF1-205ENST00000598209 CCDC102BQ68D86 513 aa17.11■□□□□ 0.33
UPF1-205ENST00000598209 SULF1Q8IWU6 871 aa17.11■□□□□ 0.33
UPF1-205ENST00000598209 RPAP2Q8IXW5 612 aaPredicted RBP17.11■□□□□ 0.33
UPF1-205ENST00000598209 XAGE2Q96GT9 111 aa17.11■□□□□ 0.33
UPF1-205ENST00000598209 ZBED3Q96IU2 234 aaPredicted RBP17.11■□□□□ 0.33
UPF1-205ENST00000598209 NEUROD6Q96NK8 337 aa17.11■□□□□ 0.33
UPF1-205ENST00000598209 TTF2Q9UNY4 1162 aaKnown RBP17.11■□□□□ 0.33
UPF1-205ENST00000598209 CFAP100Q494V2 611 aa17.1■□□□□ 0.33
UPF1-205ENST00000598209 CST9Q5W186 159 aa17.1■□□□□ 0.33
UPF1-205ENST00000598209 DLK2Q6UY11 383 aa17.1■□□□□ 0.33
UPF1-205ENST00000598209 MTMR14Q8NCE2 650 aa17.1■□□□□ 0.33
UPF1-205ENST00000598209 PITPNM2Q9BZ72 1349 aa17.1■□□□□ 0.33
UPF1-205ENST00000598209 CEP350Q5VT06 3117 aa17.1■□□□□ 0.33
UPF1-205ENST00000598209 CELF2O95319 508 aaKnown RBP17.09■□□□□ 0.33
UPF1-205ENST00000598209 GRIK5Q16478 980 aa17.09■□□□□ 0.33
UPF1-205ENST00000598209 WDR66Q8TBY9 1149 aa17.09■□□□□ 0.33
UPF1-205ENST00000598209 KLRG1Q96E93 195 aa17.09■□□□□ 0.33
UPF1-205ENST00000598209 ZNF408Q9H9D4 720 aa17.09■□□□□ 0.33
UPF1-205ENST00000598209 GPR108Q9NPR9 543 aa17.09■□□□□ 0.33
UPF1-205ENST00000598209 DENND2AQ9ULE3 1009 aa17.09■□□□□ 0.33
UPF1-205ENST00000598209 PCDHAC2Q9Y5I4 1007 aa17.09■□□□□ 0.33
UPF1-205ENST00000598209 SEMA3EO15041 775 aa17.08■□□□□ 0.32
UPF1-205ENST00000598209 HMMRO75330 724 aa17.08■□□□□ 0.32
UPF1-205ENST00000598209 RBM5P52756 815 aaKnown RBP eCLIP17.08■□□□□ 0.32
UPF1-205ENST00000598209 TNNI3KQ59H18 835 aa17.08■□□□□ 0.32
UPF1-205ENST00000598209 SIRT2Q8IXJ6 389 aa17.08■□□□□ 0.32
UPF1-205ENST00000598209 SCAF8Q9UPN6 1271 aaKnown RBP17.08■□□□□ 0.32
UPF1-205ENST00000598209 EXOC6BQ9Y2D4 811 aa17.08■□□□□ 0.32
UPF1-205ENST00000598209 FPGT-TNNI3KV9GXZ4 949 aa17.08■□□□□ 0.32
UPF1-205ENST00000598209 SPDYE2BA6NHP3 402 aa17.07■□□□□ 0.32
UPF1-205ENST00000598209 ZBTB22O15209 634 aa17.07■□□□□ 0.32
UPF1-205ENST00000598209 SPDYE6P0CI01 402 aa17.07■□□□□ 0.32
UPF1-205ENST00000598209 GORABQ5T7V8 394 aa17.07■□□□□ 0.32
UPF1-205ENST00000598209 MKRN1Q9UHC7 482 aaKnown RBP17.07■□□□□ 0.32
UPF1-205ENST00000598209 SERPINA10Q9UK55 444 aa17.07■□□□□ 0.32
UPF1-205ENST00000598209 ABT1Q9ULW3 272 aaKnown RBP17.07■□□□□ 0.32
UPF1-205ENST00000598209 SUGT1Q9Y2Z0 365 aa17.07■□□□□ 0.32
UPF1-205ENST00000598209 CNTNAP1P78357 1384 aa17.06■□□□□ 0.32
UPF1-205ENST00000598209 CRKP46108 304 aa17.06■□□□□ 0.32
UPF1-205ENST00000598209 RASGRF1Q13972 1273 aa17.06■□□□□ 0.32
UPF1-205ENST00000598209 HSP90AB4PQ58FF6 505 aa17.06■□□□□ 0.32
UPF1-205ENST00000598209 ERC1Q8IUD2 1116 aa17.06■□□□□ 0.32
UPF1-205ENST00000598209 APOBEC3FQ8IUX4 373 aaKnown RBP17.06■□□□□ 0.32
UPF1-205ENST00000598209 CDCA5Q96FF9 252 aa17.06■□□□□ 0.32
UPF1-205ENST00000598209 PRMT6Q96LA8 375 aaPredicted RBP17.06■□□□□ 0.32
UPF1-205ENST00000598209 MYH2Q9UKX2 1941 aa17.06■□□□□ 0.32
UPF1-205ENST00000598209 MAST3O60307 1309 aa17.05■□□□□ 0.32
UPF1-205ENST00000598209 SALL1Q9NSC2 1324 aa17.05■□□□□ 0.32
UPF1-205ENST00000598209 MYO1BO43795 1136 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms