RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 WDR63Q8IWG1 891 aa15.92■□□□□ 0.14
TRIM28-212ENST00000597995 DEFB129Q9H1M3 183 aa15.92■□□□□ 0.14
TRIM28-212ENST00000597995 ANGEL1Q9UNK9 670 aaKnown RBP15.92■□□□□ 0.14
TRIM28-212ENST00000597995 PPP2R3BQ9Y5P8 575 aa15.92■□□□□ 0.14
TRIM28-212ENST00000597995 FANCIQ9NVI1 1328 aa15.92■□□□□ 0.14
TRIM28-212ENST00000597995 UNCXA6NJT0 531 aa15.91■□□□□ 0.14
TRIM28-212ENST00000597995 IL1R1P14778 569 aa15.91■□□□□ 0.14
TRIM28-212ENST00000597995 MKRN3Q13064 507 aaKnown RBP15.91■□□□□ 0.14
TRIM28-212ENST00000597995 CERS5Q8N5B7 392 aa15.91■□□□□ 0.14
TRIM28-212ENST00000597995 SNAP23O00161 211 aa15.9■□□□□ 0.14
TRIM28-212ENST00000597995 MYO1BO43795 1136 aa15.9■□□□□ 0.14
TRIM28-212ENST00000597995 FKTNO75072 461 aa15.9■□□□□ 0.14
TRIM28-212ENST00000597995 TAF5LO75529 589 aa15.9■□□□□ 0.14
TRIM28-212ENST00000597995 PRKG1Q13976 671 aa15.9■□□□□ 0.14
TRIM28-212ENST00000597995 BEND3Q5T5X7 828 aa15.9■□□□□ 0.14
TRIM28-212ENST00000597995 FBXO46Q6PJ61 603 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-212ENST00000597995 ZNF804AQ7Z570 1209 aa15.9■□□□□ 0.14
TRIM28-212ENST00000597995 HELBQ8NG08 1087 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-212ENST00000597995 SLC10A4Q96EP9 437 aa15.9■□□□□ 0.14
TRIM28-212ENST00000597995 MANSC4A6NHS7 340 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-212ENST00000597995 PPP1R12BO60237 982 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-212ENST00000597995 SUPT20HL1Q3ZLR7 823 aa15.89■□□□□ 0.13
TRIM28-212ENST00000597995 SPDYE2BA6NHP3 402 aa15.88■□□□□ 0.13
TRIM28-212ENST00000597995 SPDYE6P0CI01 402 aa15.88■□□□□ 0.13
TRIM28-212ENST00000597995 ZBTB48P10074 688 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-212ENST00000597995 EXOSC9Q06265 439 aaKnown RBP15.88■□□□□ 0.13
TRIM28-212ENST00000597995 CFAP100Q494V2 611 aa15.88■□□□□ 0.13
TRIM28-212ENST00000597995 LMBR1LQ6UX01 489 aa15.88■□□□□ 0.13
TRIM28-212ENST00000597995 PCDH10Q9P2E7 1040 aa15.88■□□□□ 0.13
TRIM28-212ENST00000597995 CHMP3Q9Y3E7 222 aa15.88■□□□□ 0.13
TRIM28-212ENST00000597995 F6X3S4 739 aa15.87■□□□□ 0.13
TRIM28-212ENST00000597995 CCDC57Q2TAC2 916 aa15.87■□□□□ 0.13
TRIM28-212ENST00000597995 PRPF38BQ5VTL8 546 aaKnown RBP15.87■□□□□ 0.13
TRIM28-212ENST00000597995 LDHAL6AQ6ZMR3 332 aa15.87■□□□□ 0.13
TRIM28-212ENST00000597995 IFNL1Q8IU54 200 aa15.87■□□□□ 0.13
TRIM28-212ENST00000597995 PRMT6Q96LA8 375 aaPredicted RBP15.87■□□□□ 0.13
TRIM28-212ENST00000597995 R3HDMLQ9H3Y0 253 aa15.87■□□□□ 0.13
TRIM28-212ENST00000597995 F8W031 263 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-212ENST00000597995 GRM8O00222 908 aa15.86■□□□□ 0.13
TRIM28-212ENST00000597995 WNK4Q96J92 1243 aa15.86■□□□□ 0.13
TRIM28-212ENST00000597995 FZD1Q9UP38 647 aa15.86■□□□□ 0.13
TRIM28-212ENST00000597995 PCDHAC2Q9Y5I4 1007 aa15.86■□□□□ 0.13
TRIM28-212ENST00000597995 ECM29Q5VYK3 1845 aa15.86■□□□□ 0.13
TRIM28-212ENST00000597995 FAM205AQ6ZU69 1335 aa15.86■□□□□ 0.13
TRIM28-212ENST00000597995 ZNF521Q96K83 1311 aa15.86■□□□□ 0.13
TRIM28-212ENST00000597995 SSC5DA1L4H1 1573 aa15.85■□□□□ 0.13
TRIM28-212ENST00000597995 IREB2P48200 963 aaKnown RBP15.85■□□□□ 0.13
TRIM28-212ENST00000597995 TAF7LQ5H9L4 462 aa15.85■□□□□ 0.13
TRIM28-212ENST00000597995 EPHA10Q5JZY3 1008 aa15.85■□□□□ 0.13
TRIM28-212ENST00000597995 CLMNQ96JQ2 1002 aa15.85■□□□□ 0.13
TRIM28-212ENST00000597995 CNNM1Q9NRU3 951 aa15.85■□□□□ 0.13
TRIM28-212ENST00000597995 A0A1B0GUL6 1792 aa15.85■□□□□ 0.13
TRIM28-212ENST00000597995 CLRN2A0PK11 232 aa15.84■□□□□ 0.13
TRIM28-212ENST00000597995 USP2O75604 605 aaPredicted RBP15.84■□□□□ 0.13
TRIM28-212ENST00000597995 ALDH1L1O75891 902 aa15.84■□□□□ 0.13
TRIM28-212ENST00000597995 UBE4AQ14139 1066 aa15.84■□□□□ 0.13
TRIM28-212ENST00000597995 RASA3Q14644 834 aa15.84■□□□□ 0.13
TRIM28-212ENST00000597995 NBPF12Q5TAG4 269 aaPredicted RBP15.84■□□□□ 0.13
TRIM28-212ENST00000597995 TDRD7Q8NHU6 1098 aaKnown RBP15.84■□□□□ 0.13
TRIM28-212ENST00000597995 ZNF594Q96JF6 807 aaPredicted RBP15.84■□□□□ 0.13
TRIM28-212ENST00000597995 VEZTQ9HBM0 779 aa15.84■□□□□ 0.13
TRIM28-212ENST00000597995 PLIN1O60240 522 aa15.83■□□□□ 0.12
TRIM28-212ENST00000597995 RBM5P52756 815 aaKnown RBP eCLIP15.83■□□□□ 0.12
TRIM28-212ENST00000597995 TNFAIP1Q13829 316 aa15.83■□□□□ 0.12
TRIM28-212ENST00000597995 OTUD7BQ6GQQ9 843 aa15.83■□□□□ 0.12
TRIM28-212ENST00000597995 ANKRD13AQ8IZ07 590 aa15.83■□□□□ 0.12
TRIM28-212ENST00000597995 C9orf78Q9NZ63 289 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-212ENST00000597995 LAMB1P07942 1786 aa15.82■□□□□ 0.12
TRIM28-212ENST00000597995 TESPA1A2RU30 521 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-212ENST00000597995 IGF2BP3O00425 579 aaKnown RBP eCLIP15.82■□□□□ 0.12
TRIM28-212ENST00000597995 HIBADHP31937 336 aaKnown RBP15.82■□□□□ 0.12
TRIM28-212ENST00000597995 SERPINA10Q9UK55 444 aa15.82■□□□□ 0.12
TRIM28-212ENST00000597995 JAG2Q9Y219 1238 aa15.82■□□□□ 0.12
TRIM28-212ENST00000597995 TRIM17Q9Y577 477 aa15.82■□□□□ 0.12
TRIM28-212ENST00000597995 AOX1Q06278 1338 aa15.81■□□□□ 0.12
TRIM28-212ENST00000597995 SPDYE2Q495Y8 402 aa15.81■□□□□ 0.12
TRIM28-212ENST00000597995 MFSD14BQ5SR56 506 aa15.81■□□□□ 0.12
TRIM28-212ENST00000597995 INTS3Q68E01 1043 aaKnown RBP15.81■□□□□ 0.12
TRIM28-212ENST00000597995 OTOP1Q7RTM1 612 aa15.81■□□□□ 0.12
TRIM28-212ENST00000597995 ERO1AQ96HE7 468 aa15.81■□□□□ 0.12
TRIM28-212ENST00000597995 FAM84BQ96KN1 310 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-212ENST00000597995 SRCIN1Q9C0H9 1055 aa15.81■□□□□ 0.12
TRIM28-212ENST00000597995 ZNF70Q9UC06 446 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-212ENST00000597995 TTF2Q9UNY4 1162 aaKnown RBP15.81■□□□□ 0.12
TRIM28-212ENST00000597995 GYG1P46976 350 aa15.8■□□□□ 0.12
TRIM28-212ENST00000597995 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-212ENST00000597995 UTYO14607 1347 aa15.79■□□□□ 0.12
TRIM28-212ENST00000597995 MROH5Q6ZUA9 1318 aa15.79■□□□□ 0.12
TRIM28-212ENST00000597995 GJA5P36382 358 aa15.79■□□□□ 0.12
TRIM28-212ENST00000597995 SLC4A10Q6U841 1118 aa15.79■□□□□ 0.12
TRIM28-212ENST00000597995 DZIP1LQ8IYY4 767 aaKnown RBP15.79■□□□□ 0.12
TRIM28-212ENST00000597995 TDRD3Q9H7E2 651 aaKnown RBP15.79■□□□□ 0.12
TRIM28-212ENST00000597995 RIPOR2Q9Y4F9 1068 aa15.79■□□□□ 0.12
TRIM28-212ENST00000597995 TNNI2P48788 182 aa15.78■□□□□ 0.12
TRIM28-212ENST00000597995 HDLBPQ00341 1268 aaKnown RBP15.78■□□□□ 0.12
TRIM28-212ENST00000597995 CRHR2Q13324 411 aa15.78■□□□□ 0.12
TRIM28-212ENST00000597995 FBXO33Q7Z6M2 555 aa15.78■□□□□ 0.12
TRIM28-212ENST00000597995 KAZALD1Q96I82 304 aa15.78■□□□□ 0.12
TRIM28-212ENST00000597995 SUCLG2Q96I99 432 aa15.78■□□□□ 0.12
TRIM28-212ENST00000597995 TEPSINQ96N21 525 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms