RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CCDC136Q96JN2 1154 aa11.76□□□□□ -0.53
TRIM28-208ENST00000597172 HDAC5Q9UQL6 1122 aa11.76□□□□□ -0.53
TRIM28-208ENST00000597172 STXBP5LQ9Y2K9 1186 aa11.76□□□□□ -0.53
TRIM28-208ENST00000597172 SH3TC1Q8TE82 1336 aa11.76□□□□□ -0.53
TRIM28-208ENST00000597172 A0A1W2PPC1 479 aa11.75□□□□□ -0.53
TRIM28-208ENST00000597172 EGFRP00533 1210 aa11.75□□□□□ -0.53
TRIM28-208ENST00000597172 CSF1RP07333 972 aa11.75□□□□□ -0.53
TRIM28-208ENST00000597172 SREBF2Q12772 1141 aa11.75□□□□□ -0.53
TRIM28-208ENST00000597172 HDAC1Q13547 482 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-208ENST00000597172 POLA2Q14181 598 aa11.75□□□□□ -0.53
TRIM28-208ENST00000597172 SLC4A8Q2Y0W8 1093 aa11.75□□□□□ -0.53
TRIM28-208ENST00000597172 SSH3Q8TE77 659 aa11.75□□□□□ -0.53
TRIM28-208ENST00000597172 ZNF333Q96JL9 665 aa11.75□□□□□ -0.53
TRIM28-208ENST00000597172 NYXQ9GZU5 481 aa11.75□□□□□ -0.53
TRIM28-208ENST00000597172 ZBTB12Q9Y330 459 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-208ENST00000597172 UBE2Q2LH0YL09 131 aa11.74□□□□□ -0.53
TRIM28-208ENST00000597172 COL9A1P20849 921 aa11.74□□□□□ -0.53
TRIM28-208ENST00000597172 LMBR1LQ6UX01 489 aa11.74□□□□□ -0.53
TRIM28-208ENST00000597172 C3orf67Q6ZVT6 689 aa11.74□□□□□ -0.53
TRIM28-208ENST00000597172 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.74□□□□□ -0.53
TRIM28-208ENST00000597172 TTLL11Q8NHH1 800 aa11.74□□□□□ -0.53
TRIM28-208ENST00000597172 RBM17Q96I25 401 aaKnown RBP11.74□□□□□ -0.53
TRIM28-208ENST00000597172 CRAMP1Q96RY5 1269 aa11.74□□□□□ -0.53
TRIM28-208ENST00000597172 RTFDC1Q9BY42 306 aaPredicted RBP11.74□□□□□ -0.53
TRIM28-208ENST00000597172 RWDD1Q9H446 243 aaPredicted RBP11.74□□□□□ -0.53
TRIM28-208ENST00000597172 SRGAP3O43295 1099 aa11.73□□□□□ -0.53
TRIM28-208ENST00000597172 PDE8AO60658 829 aa11.73□□□□□ -0.53
TRIM28-208ENST00000597172 ALDH1A1P00352 501 aa11.73□□□□□ -0.53
TRIM28-208ENST00000597172 RFX5P48382 616 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-208ENST00000597172 KIAA2012Q0VF49 1180 aa11.73□□□□□ -0.53
TRIM28-208ENST00000597172 MKRN3Q13064 507 aaKnown RBP11.73□□□□□ -0.53
TRIM28-208ENST00000597172 MOB2Q70IA6 237 aa11.73□□□□□ -0.53
TRIM28-208ENST00000597172 DEFB123Q8N688 67 aa11.73□□□□□ -0.53
TRIM28-208ENST00000597172 PIEZO1Q92508 2521 aa11.73□□□□□ -0.53
TRIM28-208ENST00000597172 ERO1AQ96HE7 468 aa11.73□□□□□ -0.53
TRIM28-208ENST00000597172 EFCC1Q9HA90 598 aa11.73□□□□□ -0.53
TRIM28-208ENST00000597172 ABCC12Q96J65 1359 aa11.72□□□□□ -0.53
TRIM28-208ENST00000597172 YDJCA8MPS7 323 aa11.72□□□□□ -0.53
TRIM28-208ENST00000597172 CTSWP56202 376 aa11.72□□□□□ -0.53
TRIM28-208ENST00000597172 NBPF11Q86T75 865 aa11.72□□□□□ -0.53
TRIM28-208ENST00000597172 DCTPP1Q9H773 170 aa11.72□□□□□ -0.53
TRIM28-208ENST00000597172 GGA3Q9NZ52 723 aa11.72□□□□□ -0.53
TRIM28-208ENST00000597172 ATP6V0A2Q9Y487 856 aa11.72□□□□□ -0.53
TRIM28-208ENST00000597172 NCOR1O75376 2440 aa11.72□□□□□ -0.53
TRIM28-208ENST00000597172 SPTBN5Q9NRC6 3674 aaKnown RBP11.72□□□□□ -0.53
TRIM28-208ENST00000597172 WTIPA6NIX2 430 aaPredicted RBP11.71□□□□□ -0.53
TRIM28-208ENST00000597172 SF3B3Q15393 1217 aaKnown RBP11.71□□□□□ -0.53
TRIM28-208ENST00000597172 GPR153Q6NV75 609 aa11.71□□□□□ -0.53
TRIM28-208ENST00000597172 SMC5Q8IY18 1101 aa11.71□□□□□ -0.53
TRIM28-208ENST00000597172 CD99L2Q8TCZ2 262 aa11.71□□□□□ -0.53
TRIM28-208ENST00000597172 CCDC85AQ96PX6 553 aaPredicted RBP11.71□□□□□ -0.53
TRIM28-208ENST00000597172 GREM2Q9H772 168 aa11.71□□□□□ -0.53
TRIM28-208ENST00000597172 NR2E3Q9Y5X4 410 aa11.71□□□□□ -0.53
TRIM28-208ENST00000597172 ASTN2O75129 1339 aaPredicted RBP11.7□□□□□ -0.54
TRIM28-208ENST00000597172 PSMD14O00487 310 aa11.7□□□□□ -0.54
TRIM28-208ENST00000597172 HMMRO75330 724 aa11.7□□□□□ -0.54
TRIM28-208ENST00000597172 PTPN12Q05209 780 aaKnown RBP11.7□□□□□ -0.54
TRIM28-208ENST00000597172 KIF4BQ2VIQ3 1234 aa11.7□□□□□ -0.54
TRIM28-208ENST00000597172 DPP8Q6V1X1 898 aaPredicted RBP11.7□□□□□ -0.54
TRIM28-208ENST00000597172 KLHDC4Q8TBB5 520 aa11.7□□□□□ -0.54
TRIM28-208ENST00000597172 PA2G4Q9UQ80 394 aaKnown RBP11.7□□□□□ -0.54
TRIM28-208ENST00000597172 NOP58Q9Y2X3 529 aaKnown RBP11.7□□□□□ -0.54
TRIM28-208ENST00000597172 DDX60Q8IY21 1712 aaKnown RBP11.69□□□□□ -0.54
TRIM28-208ENST00000597172 MYCP01106 439 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-208ENST00000597172 HSP90B1P14625 803 aaKnown RBP11.69□□□□□ -0.54
TRIM28-208ENST00000597172 ITGA6P23229 1130 aa11.69□□□□□ -0.54
TRIM28-208ENST00000597172 RPS12P25398 132 aaKnown RBP11.69□□□□□ -0.54
TRIM28-208ENST00000597172 SLC9C1Q4G0N8 1177 aa11.69□□□□□ -0.54
TRIM28-208ENST00000597172 Q7L0L9 218 aa11.69□□□□□ -0.54
TRIM28-208ENST00000597172 CENPQQ7L2Z9 268 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-208ENST00000597172 ZNF594Q96JF6 807 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-208ENST00000597172 NLRP3Q96P20 1036 aa11.69□□□□□ -0.54
TRIM28-208ENST00000597172 COPRSQ9NQ92 184 aa11.69□□□□□ -0.54
TRIM28-208ENST00000597172 SEC31BQ9NQW1 1179 aa11.69□□□□□ -0.54
TRIM28-208ENST00000597172 CHMP3Q9Y3E7 222 aa11.69□□□□□ -0.54
TRIM28-208ENST00000597172 RIC1Q4ADV7 1423 aa11.69□□□□□ -0.54
TRIM28-208ENST00000597172 SURF6O75683 361 aaKnown RBP11.68□□□□□ -0.54
TRIM28-208ENST00000597172 TTLL12Q14166 644 aaPredicted RBP11.68□□□□□ -0.54
TRIM28-208ENST00000597172 CCDC152Q4G0S7 254 aa11.68□□□□□ -0.54
TRIM28-208ENST00000597172 MTMR10Q9NXD2 777 aa11.68□□□□□ -0.54
TRIM28-208ENST00000597172 EXOC6BQ9Y2D4 811 aa11.68□□□□□ -0.54
TRIM28-208ENST00000597172 RTL9Q8NET4 1388 aa11.67□□□□□ -0.54
TRIM28-208ENST00000597172 ANKRD18BA2A2Z9 1011 aa11.67□□□□□ -0.54
TRIM28-208ENST00000597172 PLA2G5P39877 138 aa11.67□□□□□ -0.54
TRIM28-208ENST00000597172 IFIT5Q13325 482 aaKnown RBP11.67□□□□□ -0.54
TRIM28-208ENST00000597172 CCDC57Q2TAC2 916 aa11.67□□□□□ -0.54
TRIM28-208ENST00000597172 ANGEL2Q5VTE6 544 aaKnown RBP11.67□□□□□ -0.54
TRIM28-208ENST00000597172 HTATIP2Q9BUP3 242 aa11.67□□□□□ -0.54
TRIM28-208ENST00000597172 PUS3Q9BZE2 481 aaKnown RBP11.67□□□□□ -0.54
TRIM28-208ENST00000597172 INHBEP58166 350 aa11.66□□□□□ -0.54
TRIM28-208ENST00000597172 SCARF1Q14162 830 aa11.66□□□□□ -0.54
TRIM28-208ENST00000597172 LRRC24Q50LG9 513 aa11.66□□□□□ -0.54
TRIM28-208ENST00000597172 ATG9AQ7Z3C6 839 aa11.66□□□□□ -0.54
TRIM28-208ENST00000597172 IFNL1Q8IU54 200 aa11.66□□□□□ -0.54
TRIM28-208ENST00000597172 SP8Q8IXZ3 490 aa11.66□□□□□ -0.54
TRIM28-208ENST00000597172 FAM122AQ96E09 287 aa11.66□□□□□ -0.54
TRIM28-208ENST00000597172 SIL1Q9H173 461 aa11.66□□□□□ -0.54
TRIM28-208ENST00000597172 RAPGEFL1Q9UHV5 662 aa11.66□□□□□ -0.54
TRIM28-208ENST00000597172 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.66□□□□□ -0.54
TRIM28-208ENST00000597172 ZNF609O15014 1411 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms