RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 ALDH1A1P00352 501 aa12.73□□□□□ -0.37
LIG1-209ENST00000596104 IL1R1P14778 569 aa12.73□□□□□ -0.37
LIG1-209ENST00000596104 FOXO4P98177 505 aa12.73□□□□□ -0.37
LIG1-209ENST00000596104 HELBQ8NG08 1087 aaPredicted RBP12.73□□□□□ -0.37
LIG1-209ENST00000596104 SLC10A4Q96EP9 437 aa12.73□□□□□ -0.37
LIG1-209ENST00000596104 CLMNQ96JQ2 1002 aa12.73□□□□□ -0.37
LIG1-209ENST00000596104 PPP2R3BQ9Y5P8 575 aa12.73□□□□□ -0.37
LIG1-209ENST00000596104 FANCIQ9NVI1 1328 aa12.72□□□□□ -0.37
LIG1-209ENST00000596104 SPDYE2BA6NHP3 402 aa12.72□□□□□ -0.37
LIG1-209ENST00000596104 IGF2BP3O00425 579 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIG1-209ENST00000596104 SPDYE6P0CI01 402 aa12.72□□□□□ -0.37
LIG1-209ENST00000596104 ZBTB48P10074 688 aaPredicted RBP12.72□□□□□ -0.37
LIG1-209ENST00000596104 INHBEP58166 350 aa12.72□□□□□ -0.37
LIG1-209ENST00000596104 FKBP1AP62942 108 aaKnown RBP12.72□□□□□ -0.37
LIG1-209ENST00000596104 CFAP100Q494V2 611 aa12.72□□□□□ -0.37
LIG1-209ENST00000596104 NCBP3Q53F19 620 aaKnown RBP12.72□□□□□ -0.37
LIG1-209ENST00000596104 IFNL1Q8IU54 200 aa12.72□□□□□ -0.37
LIG1-209ENST00000596104 WNK4Q96J92 1243 aa12.72□□□□□ -0.37
LIG1-209ENST00000596104 SPEF2Q9C093 1822 aa12.72□□□□□ -0.37
LIG1-209ENST00000596104 MYH3P11055 1940 aa12.71□□□□□ -0.37
LIG1-209ENST00000596104 CLRN2A0PK11 232 aa12.71□□□□□ -0.37
LIG1-209ENST00000596104 UNCXA6NJT0 531 aa12.71□□□□□ -0.37
LIG1-209ENST00000596104 F8W031 263 aaPredicted RBP12.71□□□□□ -0.37
LIG1-209ENST00000596104 PPP1R12BO60237 982 aaPredicted RBP12.71□□□□□ -0.37
LIG1-209ENST00000596104 VAMP4O75379 141 aa12.71□□□□□ -0.37
LIG1-209ENST00000596104 IFIT5Q13325 482 aaKnown RBP12.71□□□□□ -0.37
LIG1-209ENST00000596104 EPHA10Q5JZY3 1008 aa12.71□□□□□ -0.37
LIG1-209ENST00000596104 BEND3Q5T5X7 828 aa12.71□□□□□ -0.37
LIG1-209ENST00000596104 PRMT6Q96LA8 375 aaPredicted RBP12.71□□□□□ -0.37
LIG1-209ENST00000596104 F6X3S4 739 aa12.7□□□□□ -0.38
LIG1-209ENST00000596104 GJA5P36382 358 aa12.7□□□□□ -0.38
LIG1-209ENST00000596104 SUPT20HL1Q3ZLR7 823 aa12.7□□□□□ -0.38
LIG1-209ENST00000596104 NBPF12Q5TAG4 269 aaPredicted RBP12.7□□□□□ -0.38
LIG1-209ENST00000596104 OTOP1Q7RTM1 612 aa12.7□□□□□ -0.38
LIG1-209ENST00000596104 ZNF804AQ7Z570 1209 aa12.7□□□□□ -0.38
LIG1-209ENST00000596104 MYO1BO43795 1136 aa12.69□□□□□ -0.38
LIG1-209ENST00000596104 USP2O75604 605 aaPredicted RBP12.69□□□□□ -0.38
LIG1-209ENST00000596104 RASA3Q14644 834 aa12.69□□□□□ -0.38
LIG1-209ENST00000596104 LMBR1LQ6UX01 489 aa12.69□□□□□ -0.38
LIG1-209ENST00000596104 VEZTQ9HBM0 779 aa12.69□□□□□ -0.38
LIG1-209ENST00000596104 JAG2Q9Y219 1238 aa12.69□□□□□ -0.38
LIG1-209ENST00000596104 TRIM17Q9Y577 477 aa12.69□□□□□ -0.38
LIG1-209ENST00000596104 FAM205AQ6ZU69 1335 aa12.68□□□□□ -0.38
LIG1-209ENST00000596104 TESPA1A2RU30 521 aaPredicted RBP12.68□□□□□ -0.38
LIG1-209ENST00000596104 ZNF594Q96JF6 807 aaPredicted RBP12.68□□□□□ -0.38
LIG1-209ENST00000596104 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.68□□□□□ -0.38
LIG1-209ENST00000596104 CHMP3Q9Y3E7 222 aa12.68□□□□□ -0.38
LIG1-209ENST00000596104 HTTP42858 3142 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 POTEFA5A3E0 1075 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 GRM8O00222 908 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 IREB2P48200 963 aaKnown RBP12.67□□□□□ -0.38
LIG1-209ENST00000596104 CAP1Q01518 475 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 EXOSC9Q06265 439 aaKnown RBP12.67□□□□□ -0.38
LIG1-209ENST00000596104 CRHR2Q13324 411 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 CCDC57Q2TAC2 916 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 SPDYE2Q495Y8 402 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 LDHAL6AQ6ZMR3 332 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 WDR63Q8IWG1 891 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 ANKRD13AQ8IZ07 590 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 TDRD7Q8NHU6 1098 aaKnown RBP12.67□□□□□ -0.38
LIG1-209ENST00000596104 PTPN18Q99952 460 aa12.67□□□□□ -0.38
LIG1-209ENST00000596104 PLIN1O60240 522 aa12.66□□□□□ -0.38
LIG1-209ENST00000596104 INTS3Q68E01 1043 aaKnown RBP12.66□□□□□ -0.38
LIG1-209ENST00000596104 CDAN1Q8IWY9 1227 aa12.66□□□□□ -0.38
LIG1-209ENST00000596104 CD99L2Q8TCZ2 262 aa12.66□□□□□ -0.38
LIG1-209ENST00000596104 ERO1AQ96HE7 468 aa12.66□□□□□ -0.38
LIG1-209ENST00000596104 TEPSINQ96N21 525 aa12.66□□□□□ -0.38
LIG1-209ENST00000596104 CNNM1Q9NRU3 951 aa12.66□□□□□ -0.38
LIG1-209ENST00000596104 ZNF70Q9UC06 446 aaPredicted RBP12.66□□□□□ -0.38
LIG1-209ENST00000596104 PTPN22Q9Y2R2 807 aa12.66□□□□□ -0.38
LIG1-209ENST00000596104 RBM5P52756 815 aaKnown RBP eCLIP12.65□□□□□ -0.38
LIG1-209ENST00000596104 TNFAIP1Q13829 316 aa12.65□□□□□ -0.38
LIG1-209ENST00000596104 UBE4AQ14139 1066 aa12.65□□□□□ -0.38
LIG1-209ENST00000596104 TAF7LQ5H9L4 462 aa12.65□□□□□ -0.38
LIG1-209ENST00000596104 MFSD14BQ5SR56 506 aa12.65□□□□□ -0.38
LIG1-209ENST00000596104 OTUD7BQ6GQQ9 843 aa12.65□□□□□ -0.38
LIG1-209ENST00000596104 ARMC5Q96C12 935 aa12.65□□□□□ -0.38
LIG1-209ENST00000596104 MS4A4AQ96JQ5 239 aa12.65□□□□□ -0.38
LIG1-209ENST00000596104 FAM84BQ96KN1 310 aaPredicted RBP12.65□□□□□ -0.38
LIG1-209ENST00000596104 TDRD3Q9H7E2 651 aaKnown RBP12.65□□□□□ -0.38
LIG1-209ENST00000596104 SPINK5Q9NQ38 1064 aaPredicted RBP12.65□□□□□ -0.38
LIG1-209ENST00000596104 SERPINA10Q9UK55 444 aa12.65□□□□□ -0.38
LIG1-209ENST00000596104 TTF2Q9UNY4 1162 aaKnown RBP12.65□□□□□ -0.38
LIG1-209ENST00000596104 HIBADHP31937 336 aaKnown RBP12.64□□□□□ -0.39
LIG1-209ENST00000596104 GYG1P46976 350 aa12.64□□□□□ -0.39
LIG1-209ENST00000596104 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.64□□□□□ -0.39
LIG1-209ENST00000596104 DZIP1LQ8IYY4 767 aaKnown RBP12.64□□□□□ -0.39
LIG1-209ENST00000596104 OPTNQ96CV9 577 aa12.64□□□□□ -0.39
LIG1-209ENST00000596104 KAZALD1Q96I82 304 aa12.64□□□□□ -0.39
LIG1-209ENST00000596104 PUS3Q9BZE2 481 aaKnown RBP12.64□□□□□ -0.39
LIG1-209ENST00000596104 ELP3Q9H9T3 547 aa12.64□□□□□ -0.39
LIG1-209ENST00000596104 EFCC1Q9HA90 598 aa12.64□□□□□ -0.39
LIG1-209ENST00000596104 ALDH1L1O75891 902 aa12.63□□□□□ -0.39
LIG1-209ENST00000596104 SP3Q02447 781 aa12.63□□□□□ -0.39
LIG1-209ENST00000596104 GRIK5Q16478 980 aa12.63□□□□□ -0.39
LIG1-209ENST00000596104 CNKSR2Q8WXI2 1034 aa12.63□□□□□ -0.39
LIG1-209ENST00000596104 BRI3BPQ8WY22 251 aa12.63□□□□□ -0.39
LIG1-209ENST00000596104 SUCLG2Q96I99 432 aa12.63□□□□□ -0.39
LIG1-209ENST00000596104 SALL2Q9Y467 1007 aaPredicted RBP12.63□□□□□ -0.39
LIG1-209ENST00000596104 RIPOR2Q9Y4F9 1068 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms