RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 CCDC57Q2TAC2 916 aa19.26■□□□□ 0.67
LIG1-206ENST00000594067 TOM1L2Q6ZVM7 507 aa19.26■□□□□ 0.67
LIG1-206ENST00000594067 XAGE2Q96GT9 111 aa19.26■□□□□ 0.67
LIG1-206ENST00000594067 PCDH11XQ9BZA7 1347 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 PCDH11YQ9BZA8 1340 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 SCARF1Q14162 830 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 TPD52L1Q16890 204 aaPredicted RBP19.25■□□□□ 0.67
LIG1-206ENST00000594067 DHX40Q8IX18 779 aaKnown RBP19.25■□□□□ 0.67
LIG1-206ENST00000594067 ATG3Q9NT62 314 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 OGFRQ9NZT2 677 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 SPATA31A3Q5VYP0 1347 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 PLEKHG2Q9H7P9 1386 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 TICAM2Q86XR7 235 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.25■□□□□ 0.67
LIG1-206ENST00000594067 ANO10Q9NW15 660 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 TJP1Q07157 1748 aa19.25■□□□□ 0.67
LIG1-206ENST00000594067 A0A1B0GVL5 298 aa19.24■□□□□ 0.67
LIG1-206ENST00000594067 POLR3DP05423 398 aaPredicted RBP19.24■□□□□ 0.67
LIG1-206ENST00000594067 IMMTQ16891 758 aaKnown RBP19.24■□□□□ 0.67
LIG1-206ENST00000594067 LRRC8AQ8IWT6 810 aa19.24■□□□□ 0.67
LIG1-206ENST00000594067 CCDC112Q8NEF3 446 aa19.24■□□□□ 0.67
LIG1-206ENST00000594067 ERVV-2B6SEH9 535 aa19.24■□□□□ 0.67
LIG1-206ENST00000594067 FGAP02671 866 aa19.24■□□□□ 0.67
LIG1-206ENST00000594067 MRPS27Q92552 414 aaKnown RBP19.24■□□□□ 0.67
LIG1-206ENST00000594067 MRFAP1L1Q96HT8 127 aa19.24■□□□□ 0.67
LIG1-206ENST00000594067 CLIC4Q9Y696 253 aa19.24■□□□□ 0.67
LIG1-206ENST00000594067 KLF18A0A0U1RQI7 1052 aa19.23■□□□□ 0.67
LIG1-206ENST00000594067 PRC1O43663 620 aa19.23■□□□□ 0.67
LIG1-206ENST00000594067 PI16Q6UXB8 463 aa19.23■□□□□ 0.67
LIG1-206ENST00000594067 AOPEPQ8N6M6 819 aa19.23■□□□□ 0.67
LIG1-206ENST00000594067 GJB4Q9NTQ9 266 aa19.23■□□□□ 0.67
LIG1-206ENST00000594067 RTEL1Q9NZ71 1219 aa19.23■□□□□ 0.67
LIG1-206ENST00000594067 ZAP70P43403 619 aa19.23■□□□□ 0.67
LIG1-206ENST00000594067 FMR1NBQ8N0W7 255 aaPredicted RBP19.23■□□□□ 0.67
LIG1-206ENST00000594067 C8orf76Q96K31 380 aa19.23■□□□□ 0.67
LIG1-206ENST00000594067 SDF4Q9BRK5 362 aa19.23■□□□□ 0.67
LIG1-206ENST00000594067 PUS7LQ9H0K6 701 aaKnown RBP19.23■□□□□ 0.67
LIG1-206ENST00000594067 GOLGA8BA8MQT2 603 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 EVCP57679 992 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 SF3A1Q15459 793 aaKnown RBP19.22■□□□□ 0.67
LIG1-206ENST00000594067 FILIP1Q7Z7B0 1213 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 ISCA1Q9BUE6 129 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 MYH15Q9Y2K3 1946 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 NUP188Q5SRE5 1749 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 NDUFA8P51970 172 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 RBM6P78332 1123 aaKnown RBP19.22■□□□□ 0.67
LIG1-206ENST00000594067 STK38Q15208 465 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 TAF7LQ5H9L4 462 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 ADALQ6DHV7 355 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 CEP57L1Q8IYX8 460 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 FAM89AQ96GI7 184 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 CPDO75976 1380 aa19.22■□□□□ 0.67
LIG1-206ENST00000594067 LRRFIP1Q32MZ4 808 aaKnown RBP19.21■□□□□ 0.67
LIG1-206ENST00000594067 CEP135Q66GS9 1140 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 LINC00301Q8NCQ3 95 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 CHMP4CQ96CF2 233 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 PRDM11Q9NQV5 511 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 ORC3Q9UBD5 711 aaPredicted RBP19.21■□□□□ 0.67
LIG1-206ENST00000594067 HPS5Q9UPZ3 1129 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 AKAP2Q9Y2D5 859 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 KCPQ6ZWJ8 1503 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 USP27XA6NNY8 438 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 IGSF3O75054 1194 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 TCIRG1Q13488 830 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 MB21D2Q8IYB1 491 aaPredicted RBP19.21■□□□□ 0.67
LIG1-206ENST00000594067 FBXL16Q8N461 479 aa19.21■□□□□ 0.67
LIG1-206ENST00000594067 CGNQ9P2M7 1197 aaKnown RBP19.21■□□□□ 0.67
LIG1-206ENST00000594067 ZFYP08048 801 aaPredicted RBP19.2■□□□□ 0.66
LIG1-206ENST00000594067 ANTXR2P58335 489 aa19.2■□□□□ 0.66
LIG1-206ENST00000594067 WDR17Q8IZU2 1322 aa19.2■□□□□ 0.66
LIG1-206ENST00000594067 DDX41Q9UJV9 622 aaKnown RBP19.2■□□□□ 0.66
LIG1-206ENST00000594067 CADPS2Q86UW7 1296 aa19.2■□□□□ 0.66
LIG1-206ENST00000594067 RALYLQ86SE5 291 aaKnown RBP19.19■□□□□ 0.66
LIG1-206ENST00000594067 FBXO18Q8NFZ0 1043 aa19.19■□□□□ 0.66
LIG1-206ENST00000594067 ZNF592Q92610 1267 aa19.19■□□□□ 0.66
LIG1-206ENST00000594067 APPBP2Q92624 585 aa19.19■□□□□ 0.66
LIG1-206ENST00000594067 CPLX1O14810 134 aa19.19■□□□□ 0.66
LIG1-206ENST00000594067 NEMFO60524 1076 aa19.19■□□□□ 0.66
LIG1-206ENST00000594067 NCOA7Q8NI08 942 aa19.19■□□□□ 0.66
LIG1-206ENST00000594067 A0A1W2PQ27 194 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 A0A1W2PQ64 194 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 A0A1W2PQD8 194 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 CCDC69A6NI79 296 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 GPAA1O43292 621 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 SKILP12757 684 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 NYAP1Q6ZVC0 841 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 SYNE4Q8N205 404 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 TAOK2Q9UL54 1235 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 PARP4Q9UKK3 1724 aaKnown RBP19.18■□□□□ 0.66
LIG1-206ENST00000594067 KIF28PB7ZC32 967 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 ZNF213O14771 459 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 DHX16O60231 1041 aaKnown RBP19.18■□□□□ 0.66
LIG1-206ENST00000594067 MYSM1Q5VVJ2 828 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 NAT10Q9H0A0 1025 aaKnown RBP19.18■□□□□ 0.66
LIG1-206ENST00000594067 DENND2AQ9ULE3 1009 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 NWD2Q9ULI1 1742 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 SPTLC2O15270 562 aa19.18■□□□□ 0.66
LIG1-206ENST00000594067 BCL11BQ9C0K0 894 aaPredicted RBP19.18■□□□□ 0.66
LIG1-206ENST00000594067 SPEF2Q9C093 1822 aa19.17■□□□□ 0.66
LIG1-206ENST00000594067 IFIT5Q13325 482 aaKnown RBP19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms