RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ANKRD20A12PQ8NF67 263 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 TEKT1Q969V4 418 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 CCDC171Q6TFL3 1326 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 IQSEC2Q5JU85 1478 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 MICU3Q86XE3 530 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 CCDC12Q8WUD4 166 aaPredicted RBP11.48□□□□□ -0.57
LIG3-216ENST00000593099 ZAP70P43403 619 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 GNAQP50148 359 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 SSRP1Q08945 709 aaKnown RBP11.48□□□□□ -0.57
LIG3-216ENST00000593099 IFIT1BQ5T764 474 aaKnown RBP11.48□□□□□ -0.57
LIG3-216ENST00000593099 RTKN2Q8IZC4 609 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 VAT1LQ9HCJ6 419 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 H7C1W4 665 aa11.47□□□□□ -0.57
LIG3-216ENST00000593099 ATP5JP18859 108 aa11.47□□□□□ -0.57
LIG3-216ENST00000593099 IL27Q8NEV9 243 aa11.47□□□□□ -0.57
LIG3-216ENST00000593099 EHMT1Q9H9B1 1298 aa11.47□□□□□ -0.57
LIG3-216ENST00000593099 KRT18P05783 430 aaKnown RBP11.47□□□□□ -0.57
LIG3-216ENST00000593099 CEBPZQ03701 1054 aaKnown RBP11.47□□□□□ -0.57
LIG3-216ENST00000593099 TBC1D9BQ66K14 1250 aa11.47□□□□□ -0.57
LIG3-216ENST00000593099 ZNF408Q9H9D4 720 aa11.47□□□□□ -0.57
LIG3-216ENST00000593099 TNFAIP1Q13829 316 aa11.47□□□□□ -0.57
LIG3-216ENST00000593099 EAPPQ56P03 285 aaPredicted RBP11.47□□□□□ -0.57
LIG3-216ENST00000593099 IARSP41252 1262 aaKnown RBP11.47□□□□□ -0.57
LIG3-216ENST00000593099 NFIXQ14938 502 aa11.47□□□□□ -0.57
LIG3-216ENST00000593099 CCDC102BQ68D86 513 aa11.47□□□□□ -0.57
LIG3-216ENST00000593099 METAP2P50579 478 aaKnown RBP eCLIP11.46□□□□□ -0.57
LIG3-216ENST00000593099 BCAMP50895 628 aa11.46□□□□□ -0.57
LIG3-216ENST00000593099 C8orf76Q96K31 380 aa11.46□□□□□ -0.57
LIG3-216ENST00000593099 PUS3Q9BZE2 481 aaKnown RBP11.46□□□□□ -0.57
LIG3-216ENST00000593099 SH2D4AQ9H788 454 aa11.46□□□□□ -0.57
LIG3-216ENST00000593099 NBPF26B4DH59 902 aa11.46□□□□□ -0.57
LIG3-216ENST00000593099 FIBPO43427 364 aa11.46□□□□□ -0.57
LIG3-216ENST00000593099 EIF5P55010 431 aaKnown RBP11.46□□□□□ -0.57
LIG3-216ENST00000593099 KRT85P78386 507 aa11.46□□□□□ -0.57
LIG3-216ENST00000593099 NBPF10Q6P3W6 841 aaKnown RBP11.46□□□□□ -0.57
LIG3-216ENST00000593099 NBPF15Q8N660 670 aa11.46□□□□□ -0.57
LIG3-216ENST00000593099 R3HCC1Q9Y3T6 440 aaKnown RBP11.46□□□□□ -0.57
LIG3-216ENST00000593099 ITSN1Q15811 1721 aa11.46□□□□□ -0.57
LIG3-216ENST00000593099 CHMLP26374 656 aa11.46□□□□□ -0.58
LIG3-216ENST00000593099 CCT2P78371 535 aaKnown RBP11.46□□□□□ -0.58
LIG3-216ENST00000593099 DEFB132Q7Z7B7 95 aa11.46□□□□□ -0.58
LIG3-216ENST00000593099 TTLL11Q8NHH1 800 aa11.46□□□□□ -0.58
LIG3-216ENST00000593099 OTUD7AQ8TE49 926 aaPredicted RBP11.46□□□□□ -0.58
LIG3-216ENST00000593099 SLC16A10Q8TF71 515 aa11.46□□□□□ -0.58
LIG3-216ENST00000593099 ARMT1Q9H993 441 aa11.46□□□□□ -0.58
LIG3-216ENST00000593099 GPR108Q9NPR9 543 aa11.46□□□□□ -0.58
LIG3-216ENST00000593099 AATFQ9NY61 560 aaKnown RBP eCLIP11.46□□□□□ -0.58
LIG3-216ENST00000593099 KINO60870 393 aaKnown RBP11.45□□□□□ -0.58
LIG3-216ENST00000593099 MSNP26038 577 aaKnown RBP11.45□□□□□ -0.58
LIG3-216ENST00000593099 NLRP5P59047 1200 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 KIAA0825Q8IV33 1275 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 EAF2Q96CJ1 260 aaPredicted RBP11.45□□□□□ -0.58
LIG3-216ENST00000593099 PICK1Q9NRD5 415 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 SAP30BPQ9UHR5 308 aaKnown RBP11.45□□□□□ -0.58
LIG3-216ENST00000593099 TMEM132AQ24JP5 1023 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 NRKQ7Z2Y5 1582 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 KLF18A0A0U1RQI7 1052 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 SEMA3EO15041 775 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 ZBTB43O43298 467 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 EZH2Q15910 746 aaKnown RBP11.45□□□□□ -0.58
LIG3-216ENST00000593099 SASS6Q6UVJ0 657 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 BRF1Q92994 677 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 CCDC194A0A1B0GVG4 234 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 GPAA1O43292 621 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 ANAPC15P60006 121 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 LINC00116Q8NCU8 138 aa11.45□□□□□ -0.58
LIG3-216ENST00000593099 ARHGEF28Q8N1W1 1705 aaKnown RBP11.45□□□□□ -0.58
LIG3-216ENST00000593099 ME1P48163 572 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 TRIM28Q13263 835 aaKnown RBP11.44□□□□□ -0.58
LIG3-216ENST00000593099 CCDC144CPQ8IYA2 1237 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 ISCA1Q9BUE6 129 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 BRIP1Q9BX63 1249 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 ITPK1Q13572 414 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 SLC15A2Q16348 729 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 USP40Q9NVE5 1235 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 BSDC1Q9NW68 430 aaPredicted RBP11.44□□□□□ -0.58
LIG3-216ENST00000593099 CFAP45Q9UL16 551 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 GOLGA6L3A6NEY3 463 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 C21orf2O43822 256 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 IGKV5-2P06315 115 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 HOMER1Q86YM7 354 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 MPHOSPH6Q99547 160 aaKnown RBP11.44□□□□□ -0.58
LIG3-216ENST00000593099 TAOK3Q9H2K8 898 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 CEP131Q9UPN4 1083 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 CNTNAP4Q9C0A0 1308 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 ZNF532Q9HCE3 1301 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 TSR1Q2NL82 804 aaKnown RBP11.44□□□□□ -0.58
LIG3-216ENST00000593099 GRIPAP1Q4V328 841 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 FAM13BQ9NYF5 915 aa11.44□□□□□ -0.58
LIG3-216ENST00000593099 PRC1O43663 620 aa11.43□□□□□ -0.58
LIG3-216ENST00000593099 ORC3Q9UBD5 711 aaPredicted RBP11.43□□□□□ -0.58
LIG3-216ENST00000593099 CDHR2Q9BYE9 1310 aa11.43□□□□□ -0.58
LIG3-216ENST00000593099 COL5A2P05997 1499 aaPredicted RBP11.43□□□□□ -0.58
LIG3-216ENST00000593099 CALM1P0DP23 149 aa11.43□□□□□ -0.58
LIG3-216ENST00000593099 CALM2P0DP24 149 aa11.43□□□□□ -0.58
LIG3-216ENST00000593099 CALM3P0DP25 149 aa11.43□□□□□ -0.58
LIG3-216ENST00000593099 RTN1Q16799 776 aa11.43□□□□□ -0.58
LIG3-216ENST00000593099 BMP2KQ9NSY1 1161 aaPredicted RBP11.43□□□□□ -0.58
LIG3-216ENST00000593099 ADAMTSL3P82987 1691 aa11.43□□□□□ -0.58
LIG3-216ENST00000593099 SIGLEC1Q9BZZ2 1709 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms