RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 FGD1P98174 961 aa23.29■■□□□ 1.32
CLIP3-206ENST00000593074 CCDC173Q0VFZ6 552 aa23.29■■□□□ 1.32
CLIP3-206ENST00000593074 PPP1R9BQ96SB3 815 aa23.29■■□□□ 1.32
CLIP3-206ENST00000593074 GPAA1O43292 621 aa23.28■■□□□ 1.32
CLIP3-206ENST00000593074 JAK2O60674 1132 aa23.28■■□□□ 1.32
CLIP3-206ENST00000593074 SCRN1Q12765 414 aa23.28■■□□□ 1.32
CLIP3-206ENST00000593074 IMMTQ16891 758 aaKnown RBP23.28■■□□□ 1.32
CLIP3-206ENST00000593074 SMARCC2Q8TAQ2 1214 aa23.28■■□□□ 1.32
CLIP3-206ENST00000593074 CCNL1Q9UK58 526 aaPredicted RBP23.28■■□□□ 1.32
CLIP3-206ENST00000593074 ONECUT3O60422 494 aaPredicted RBP23.27■■□□□ 1.32
CLIP3-206ENST00000593074 SLC5A1P13866 664 aa23.27■■□□□ 1.32
CLIP3-206ENST00000593074 PIH1D3Q9NQM4 214 aaKnown RBP23.27■■□□□ 1.32
CLIP3-206ENST00000593074 FGAP02671 866 aa23.26■■□□□ 1.31
CLIP3-206ENST00000593074 UBE3CQ15386 1083 aa23.26■■□□□ 1.31
CLIP3-206ENST00000593074 ERFEQ4G0M1 354 aa23.26■■□□□ 1.31
CLIP3-206ENST00000593074 CCDC183Q5T5S1 534 aa23.26■■□□□ 1.31
CLIP3-206ENST00000593074 NARFQ9UHQ1 456 aa23.26■■□□□ 1.31
CLIP3-206ENST00000593074 DOCK2Q92608 1830 aa23.26■■□□□ 1.31
CLIP3-206ENST00000593074 MYO5AQ9Y4I1 1855 aaKnown RBP23.26■■□□□ 1.31
CLIP3-206ENST00000593074 KRT85P78386 507 aa23.26■■□□□ 1.31
CLIP3-206ENST00000593074 APOBRQ0VD83 1088 aa23.26■■□□□ 1.31
CLIP3-206ENST00000593074 ANP32BQ92688 251 aaKnown RBP23.26■■□□□ 1.31
CLIP3-206ENST00000593074 TRPC5Q9UL62 973 aaPredicted RBP23.26■■□□□ 1.31
CLIP3-206ENST00000593074 SLC9C2Q5TAH2 1124 aa23.25■■□□□ 1.31
CLIP3-206ENST00000593074 ELP1O95163 1332 aa23.25■■□□□ 1.31
CLIP3-206ENST00000593074 SCN7AQ01118 1682 aa23.25■■□□□ 1.31
CLIP3-206ENST00000593074 BICDL1Q6ZP65 573 aa23.24■■□□□ 1.31
CLIP3-206ENST00000593074 SMIM5Q71RC9 77 aa23.24■■□□□ 1.31
CLIP3-206ENST00000593074 FERMT3Q86UX7 667 aa23.24■■□□□ 1.31
CLIP3-206ENST00000593074 NSUN7Q8NE18 718 aaKnown RBP23.24■■□□□ 1.31
CLIP3-206ENST00000593074 ZNF274Q96GC6 653 aaPredicted RBP23.24■■□□□ 1.31
CLIP3-206ENST00000593074 CDC5LQ99459 802 aaKnown RBP23.24■■□□□ 1.31
CLIP3-206ENST00000593074 GNPATO15228 680 aa23.24■■□□□ 1.31
CLIP3-206ENST00000593074 EVCP57679 992 aa23.24■■□□□ 1.31
CLIP3-206ENST00000593074 TBC1D9BQ66K14 1250 aa23.24■■□□□ 1.31
CLIP3-206ENST00000593074 BCL2L12Q9HB09 334 aa23.24■■□□□ 1.31
CLIP3-206ENST00000593074 RTCBQ9Y3I0 505 aaKnown RBP23.24■■□□□ 1.31
CLIP3-206ENST00000593074 NHSQ6T4R5 1651 aa23.24■■□□□ 1.31
CLIP3-206ENST00000593074 ZPR1O75312 459 aa23.23■■□□□ 1.31
CLIP3-206ENST00000593074 GTF2E1P29083 439 aaPredicted RBP23.23■■□□□ 1.31
CLIP3-206ENST00000593074 SF3B3Q15393 1217 aaKnown RBP23.23■■□□□ 1.31
CLIP3-206ENST00000593074 KLHL34Q8N239 644 aa23.23■■□□□ 1.31
CLIP3-206ENST00000593074 TSPY26PQ9H489 355 aa23.23■■□□□ 1.31
CLIP3-206ENST00000593074 BTAF1O14981 1849 aa23.23■■□□□ 1.31
CLIP3-206ENST00000593074 TCRBV5S4A2TA0A5A2 114 aa23.23■■□□□ 1.31
CLIP3-206ENST00000593074 SEPT12Q8IYM1 358 aa23.23■■□□□ 1.31
CLIP3-206ENST00000593074 SALL1Q9NSC2 1324 aa23.23■■□□□ 1.31
CLIP3-206ENST00000593074 IDH1O75874 414 aaKnown RBP23.22■■□□□ 1.31
CLIP3-206ENST00000593074 CTDNEP1O95476 244 aa23.22■■□□□ 1.31
CLIP3-206ENST00000593074 PDE6AP16499 860 aa23.22■■□□□ 1.31
CLIP3-206ENST00000593074 HAND2P61296 217 aa23.22■■□□□ 1.31
CLIP3-206ENST00000593074 HMGN5P82970 282 aaKnown RBP23.22■■□□□ 1.31
CLIP3-206ENST00000593074 SLC10A5Q5PT55 438 aa23.22■■□□□ 1.31
CLIP3-206ENST00000593074 MB21D2Q8IYB1 491 aaPredicted RBP23.22■■□□□ 1.31
CLIP3-206ENST00000593074 RRAGDQ9NQL2 400 aaPredicted RBP23.22■■□□□ 1.31
CLIP3-206ENST00000593074 PDIA3P30101 505 aaKnown RBP23.21■■□□□ 1.31
CLIP3-206ENST00000593074 AEBP2Q6ZN18 517 aaPredicted RBP23.21■■□□□ 1.31
CLIP3-206ENST00000593074 TTC6Q86TZ1 520 aa23.21■■□□□ 1.31
CLIP3-206ENST00000593074 SPATA5Q8NB90 893 aa23.21■■□□□ 1.31
CLIP3-206ENST00000593074 SETDB2Q96T68 719 aa23.21■■□□□ 1.31
CLIP3-206ENST00000593074 ZNF532Q9HCE3 1301 aa23.21■■□□□ 1.31
CLIP3-206ENST00000593074 LETM1O95202 739 aaPredicted RBP23.21■■□□□ 1.31
CLIP3-206ENST00000593074 RASGRF1Q13972 1273 aa23.21■■□□□ 1.31
CLIP3-206ENST00000593074 CHMP4CQ96CF2 233 aa23.21■■□□□ 1.31
CLIP3-206ENST00000593074 NYXQ9GZU5 481 aa23.21■■□□□ 1.31
CLIP3-206ENST00000593074 SRP68Q9UHB9 627 aaKnown RBP23.21■■□□□ 1.31
CLIP3-206ENST00000593074 WDR19Q8NEZ3 1342 aa23.21■■□□□ 1.31
CLIP3-206ENST00000593074 COL4A1P02462 1669 aa23.2■■□□□ 1.31
CLIP3-206ENST00000593074 PTPDC1A2A3K4 754 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 RESTQ13127 1097 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 CHST3Q7LGC8 479 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 SCAND2PQ9GZW5 306 aaPredicted RBP23.2■■□□□ 1.3
CLIP3-206ENST00000593074 WWC3Q9ULE0 1092 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 SNAP23O00161 211 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 ZNF213O14771 459 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 MCM5P33992 734 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 CHRNDQ07001 517 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 FAM173BQ6P4H8 233 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 ANKRD18AQ8IVF6 992 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 FAM184AQ8NB25 1140 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 TRIM44Q96DX7 344 aaPredicted RBP23.2■■□□□ 1.3
CLIP3-206ENST00000593074 DDX11Q96FC9 970 aa23.2■■□□□ 1.3
CLIP3-206ENST00000593074 CASZ1Q86V15 1759 aa23.19■■□□□ 1.3
CLIP3-206ENST00000593074 A0A1B0GUL6 1792 aa23.19■■□□□ 1.3
CLIP3-206ENST00000593074 NAA16Q6N069 864 aaPredicted RBP23.19■■□□□ 1.3
CLIP3-206ENST00000593074 NCOA7Q8NI08 942 aa23.19■■□□□ 1.3
CLIP3-206ENST00000593074 PDLIM2Q96JY6 352 aa23.19■■□□□ 1.3
CLIP3-206ENST00000593074 KIF3AQ9Y496 699 aa23.19■■□□□ 1.3
CLIP3-206ENST00000593074 C3orf67Q6ZVT6 689 aa23.18■■□□□ 1.3
CLIP3-206ENST00000593074 ARHGEF1Q92888 912 aaKnown RBP23.18■■□□□ 1.3
CLIP3-206ENST00000593074 NBPF3Q9H094 633 aa23.18■■□□□ 1.3
CLIP3-206ENST00000593074 ZSCAN16Q9H4T2 348 aaPredicted RBP23.18■■□□□ 1.3
CLIP3-206ENST00000593074 ZMYM6O95789 1325 aa23.18■■□□□ 1.3
CLIP3-206ENST00000593074 H3BQV1 296 aa23.18■■□□□ 1.3
CLIP3-206ENST00000593074 PRC1O43663 620 aa23.18■■□□□ 1.3
CLIP3-206ENST00000593074 IFFO2Q5TF58 517 aa23.18■■□□□ 1.3
CLIP3-206ENST00000593074 QTRT2Q9H974 415 aaKnown RBP23.18■■□□□ 1.3
CLIP3-206ENST00000593074 ANTXR2P58335 489 aa23.17■■□□□ 1.3
CLIP3-206ENST00000593074 CCT2P78371 535 aaKnown RBP23.17■■□□□ 1.3
CLIP3-206ENST00000593074 NBPF5PQ86XG9 351 aaPredicted RBP23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms