RNA–Protein interactions for RNA: ENST00000592138.5

TPM4-215, Transcript of tropomyosin 4, human

TSL 2

Gene TPM4, Length 635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM4-215	ENST00000592138	GNL3L	Q9NVN8	582 aa	Known RBP	11.98	□□□□□ -0.49
TPM4-215	ENST00000592138	GPRC5D	Q9NZD1	345 aa		11.98	□□□□□ -0.49
TPM4-215	ENST00000592138	HACL1	Q9UJ83	578 aa		11.98	□□□□□ -0.49
TPM4-215	ENST00000592138	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.98	□□□□□ -0.49
TPM4-215	ENST00000592138	PSME4	Q14997	1843 aa		11.97	□□□□□ -0.49
TPM4-215	ENST00000592138	LMOD1	P29536	600 aa	Predicted RBP	11.97	□□□□□ -0.49
TPM4-215	ENST00000592138	GMPS	P49915	693 aa	Predicted RBP	11.97	□□□□□ -0.49
TPM4-215	ENST00000592138	BCAM	P50895	628 aa		11.97	□□□□□ -0.49
TPM4-215	ENST00000592138	TIMM10	P62072	90 aa		11.97	□□□□□ -0.49
TPM4-215	ENST00000592138	CCDC102B	Q68D86	513 aa		11.97	□□□□□ -0.49
TPM4-215	ENST00000592138	NMRK2	Q9NPI5	230 aa		11.97	□□□□□ -0.49
TPM4-215	ENST00000592138	SCN4A	P35499	1836 aa		11.97	□□□□□ -0.49
TPM4-215	ENST00000592138	CAPN15	O75808	1086 aa		11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	ZNF280A	P59817	542 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	GTF2I	P78347	998 aa		11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	HTRA3	P83110	453 aa		11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	PNMA8A	Q86V59	439 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	CLASRP	Q8N2M8	674 aa	Known RBP	11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	TBC1D22A	Q8WUA7	517 aa		11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	GCC1	Q96CN9	775 aa		11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	LRRCC1	Q9C099	1032 aa		11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	RRAGC	Q9HB90	399 aa		11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	ADARB2	Q9NS39	739 aa	Known RBP	11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	SUGT1	Q9Y2Z0	365 aa		11.96	□□□□□ -0.49
TPM4-215	ENST00000592138	SCN9A	Q15858	1988 aa		11.96	□□□□□ -0.5
TPM4-215	ENST00000592138	ZNF646	O15015	1829 aa	Predicted RBP	11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	SALL1	Q9NSC2	1324 aa		11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	ARID4A	P29374	1257 aa	Predicted RBP	11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	ADORA1	P30542	326 aa		11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	EPHX2	P34913	555 aa		11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	PHKA1	P46020	1223 aa		11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	USP50	Q70EL3	339 aa	Predicted RBP	11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	WDR66	Q8TBY9	1149 aa		11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	EAF2	Q96CJ1	260 aa	Predicted RBP	11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	NEUROD6	Q96NK8	337 aa		11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	CNOT7	Q9UIV1	285 aa	Known RBP	11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	DENND2A	Q9ULE3	1009 aa		11.95	□□□□□ -0.5
TPM4-215	ENST00000592138	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.95	□□□□□ -0.5
TPM4-215	ENST00000592138		H7C1D1	291 aa		11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	IGSF3	O75054	1194 aa		11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	FRAT2	O75474	233 aa	Predicted RBP	11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	USP17L8	P0C7I0	530 aa		11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	UQCRFS1P1	P0C7P4	283 aa		11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	EPS15	P42566	896 aa		11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	CCDC158	Q5M9N0	1113 aa		11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	GORAB	Q5T7V8	394 aa		11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	MICALL2	Q8IY33	904 aa		11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	TNS4	Q8IZW8	715 aa		11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	RBM46	Q8TBY0	533 aa	Known RBP	11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	RWDD1	Q9H446	243 aa	Predicted RBP	11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	DBNL	Q9UJU6	430 aa	Known RBP	11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	COL1A1	P02452	1464 aa	Predicted RBP	11.94	□□□□□ -0.5
TPM4-215	ENST00000592138	RASGRF1	Q13972	1273 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	MFSD14B	Q5SR56	506 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	AACS	Q86V21	672 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	LDHD	Q86WU2	507 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	OGFOD1	Q8N543	542 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	ZGPAT	Q8N5A5	531 aa	Known RBP	11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	CERS5	Q8N5B7	392 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	ZC3H15	Q8WU90	426 aa	Known RBP	11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	FBXW7	Q969H0	707 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	DBNDD2	Q9BQY9	259 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	IL1RAPL2	Q9NP60	686 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	HDAC9	Q9UKV0	1011 aa		11.93	□□□□□ -0.5
TPM4-215	ENST00000592138	IFIT2	P09913	472 aa	Known RBP	11.92	□□□□□ -0.5
TPM4-215	ENST00000592138	SMC5	Q8IY18	1101 aa		11.92	□□□□□ -0.5
TPM4-215	ENST00000592138	MTMR14	Q8NCE2	650 aa		11.92	□□□□□ -0.5
TPM4-215	ENST00000592138	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
TPM4-215	ENST00000592138	MRI	Q9BWK5	157 aa		11.92	□□□□□ -0.5
TPM4-215	ENST00000592138	PGAP2	Q9UHJ9	254 aa		11.92	□□□□□ -0.5
TPM4-215	ENST00000592138	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.92	□□□□□ -0.5
TPM4-215	ENST00000592138	ADAMTSL1	Q8N6G6	1762 aa		11.92	□□□□□ -0.5
TPM4-215	ENST00000592138	MAST3	O60307	1309 aa		11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	IRX6	P78412	446 aa	Predicted RBP	11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	HDLBP	Q00341	1268 aa	Known RBP	11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	FSTL1	Q12841	308 aa		11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	CHAF1A	Q13111	956 aa	Predicted RBP	11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	TTC39A	Q5SRH9	613 aa		11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	KIAA0825	Q8IV33	1275 aa		11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	SPATA5	Q8NB90	893 aa		11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	MXD3	Q9BW11	206 aa		11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	MYOZ2	Q9NPC6	264 aa		11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	TLR7	Q9NYK1	1049 aa	Known RBP	11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	HMG20B	Q9P0W2	317 aa		11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	SERPINA10	Q9UK55	444 aa		11.91	□□□□□ -0.5
TPM4-215	ENST00000592138	APBB1	O00213	710 aa		11.9	□□□□□ -0.5
TPM4-215	ENST00000592138	SLC34A2	O95436	690 aa		11.9	□□□□□ -0.5
TPM4-215	ENST00000592138	MCAM	P43121	646 aa		11.9	□□□□□ -0.5
TPM4-215	ENST00000592138	KIF4B	Q2VIQ3	1234 aa		11.9	□□□□□ -0.5
TPM4-215	ENST00000592138	SMC1B	Q8NDV3	1235 aa		11.9	□□□□□ -0.5
TPM4-215	ENST00000592138	JAG2	Q9Y219	1238 aa		11.9	□□□□□ -0.5
TPM4-215	ENST00000592138	PITPNM2	Q9BZ72	1349 aa		11.89	□□□□□ -0.51
TPM4-215	ENST00000592138	SHTN1	A0MZ66	631 aa		11.89	□□□□□ -0.51
TPM4-215	ENST00000592138	IGHD	P01880	384 aa		11.89	□□□□□ -0.51
TPM4-215	ENST00000592138	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.89	□□□□□ -0.51
TPM4-215	ENST00000592138	CHADL	Q6NUI6	762 aa		11.89	□□□□□ -0.51

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