RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 EYA1Q99502 592 aa5.42□□□□□ -1.54
LIG3-211ENST00000588713 ARHGAP39Q9C0H5 1083 aa5.42□□□□□ -1.54
LIG3-211ENST00000588713 TMX4Q9H1E5 349 aaPredicted RBP5.42□□□□□ -1.54
LIG3-211ENST00000588713 PRKRIP1Q9H875 184 aaPredicted RBP5.42□□□□□ -1.54
LIG3-211ENST00000588713 ROCK2O75116 1388 aaKnown RBP5.42□□□□□ -1.54
LIG3-211ENST00000588713 RIC1Q4ADV7 1423 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 CAMTA2O94983 1202 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 HSPA5P11021 654 aaKnown RBP5.41□□□□□ -1.54
LIG3-211ENST00000588713 PTPN5P54829 565 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 IRX6P78412 446 aaPredicted RBP5.41□□□□□ -1.54
LIG3-211ENST00000588713 GRIPAP1Q4V328 841 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 PPP1R15BQ5SWA1 713 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 OTUD7BQ6GQQ9 843 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 TPTE2Q6XPS3 522 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 DPF2Q92785 391 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 GGNBP2Q9H3C7 697 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 THEGQ9P2T0 379 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 NUDCQ9Y266 331 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 VPS9D1Q9Y2B5 631 aa5.41□□□□□ -1.54
LIG3-211ENST00000588713 MUC6Q6W4X9 2439 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 NCAPD2Q15021 1401 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 POLR2AP24928 1970 aaKnown RBP5.4□□□□□ -1.54
LIG3-211ENST00000588713 KDM3BQ7LBC6 1761 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 TFRCP02786 760 aaKnown RBP5.4□□□□□ -1.54
LIG3-211ENST00000588713 PDE4AP27815 886 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 NF2P35240 595 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 TNNT2P45379 298 aaPredicted RBP5.4□□□□□ -1.54
LIG3-211ENST00000588713 INHBEP58166 350 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 NHLH1Q02575 133 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 SCARF1Q14162 830 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 KIF22Q14807 665 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 C1orf141Q5JVX7 400 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 B4GALNT3Q6L9W6 998 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 ARMC9Q7Z3E5 817 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 SUPT20HQ8NEM7 779 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 DIS3LQ8TF46 1054 aaKnown RBP5.4□□□□□ -1.54
LIG3-211ENST00000588713 ATXN2LQ8WWM7 1075 aaKnown RBP5.4□□□□□ -1.54
LIG3-211ENST00000588713 PAWRQ96IZ0 340 aaKnown RBP5.4□□□□□ -1.54
LIG3-211ENST00000588713 CRISPLD2Q9H0B8 497 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 TTYH1Q9H313 450 aaPredicted RBP5.4□□□□□ -1.54
LIG3-211ENST00000588713 FZD1Q9UP38 647 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 EMILIN1Q9Y6C2 1016 aa5.4□□□□□ -1.54
LIG3-211ENST00000588713 KIF24Q5T7B8 1368 aa5.4□□□□□ -1.55
LIG3-211ENST00000588713 GOLGA8CPA6NN73 597 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 SGPL1O95470 568 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 STARD3NLO95772 234 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 GRK4P32298 578 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 UBXN2AP68543 259 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 MRPS5P82675 430 aaKnown RBP5.39□□□□□ -1.55
LIG3-211ENST00000588713 KIAA2012Q0VF49 1180 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 NBR1Q14596 966 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 KCTD2Q14681 263 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 PLEKHO1Q53GL0 409 aaPredicted RBP5.39□□□□□ -1.55
LIG3-211ENST00000588713 DPP8Q6V1X1 898 aaPredicted RBP5.39□□□□□ -1.55
LIG3-211ENST00000588713 DZIP3Q86Y13 1208 aaKnown RBP5.39□□□□□ -1.55
LIG3-211ENST00000588713 RAET1EQ8TD07 263 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 WNK4Q96J92 1243 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 UNC93B1Q9H1C4 597 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 DBNDD1Q9H9R9 158 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 MRS2Q9HD23 443 aa5.39□□□□□ -1.55
LIG3-211ENST00000588713 ANGEL1Q9UNK9 670 aaKnown RBP5.39□□□□□ -1.55
LIG3-211ENST00000588713 NIP7Q9Y221 180 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIG3-211ENST00000588713 MS4A1P11836 297 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 PTPREP23469 700 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 TAF1CQ15572 869 aaPredicted RBP5.38□□□□□ -1.55
LIG3-211ENST00000588713 NECAB2Q7Z6G3 386 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 UBE2Q2Q8WVN8 375 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 SLC10A4Q96EP9 437 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 RBM17Q96I25 401 aaKnown RBP5.38□□□□□ -1.55
LIG3-211ENST00000588713 DEFB118Q96PH6 123 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 UIMC1Q96RL1 719 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 VPS33BQ9H267 617 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 RIPOR2Q9Y4F9 1068 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 ABCC12Q96J65 1359 aa5.38□□□□□ -1.55
LIG3-211ENST00000588713 COL2A1P02458 1487 aaPredicted RBP5.38□□□□□ -1.55
LIG3-211ENST00000588713 ZSWIM8A7E2V4 1837 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 SMIM22K7EJ46 135 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 RPS12P25398 132 aaKnown RBP5.37□□□□□ -1.55
LIG3-211ENST00000588713 PIP4K2AP48426 406 aaPredicted RBP5.37□□□□□ -1.55
LIG3-211ENST00000588713 FOSBP53539 338 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 MAP3K11Q16584 847 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 CRY2Q49AN0 593 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 DDRGK1Q96HY6 314 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 CCDC136Q96JN2 1154 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 CLMNQ96JQ2 1002 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 TRIM47Q96LD4 638 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 PTPN18Q99952 460 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 LARP6Q9BRS8 491 aaKnown RBP5.37□□□□□ -1.55
LIG3-211ENST00000588713 ZFYVE28Q9HCC9 887 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 C11orf16Q9NQ32 467 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 CDH23Q9H251 3354 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 PKD1L2Q7Z442 2459 aa5.37□□□□□ -1.55
LIG3-211ENST00000588713 ZNF646O15015 1829 aaPredicted RBP5.37□□□□□ -1.55
LIG3-211ENST00000588713 ALPK3Q96L96 1907 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 GPR37L1O60883 481 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 A1BGP04217 495 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 ZBTB48P10074 688 aaPredicted RBP5.36□□□□□ -1.55
LIG3-211ENST00000588713 IL6STP40189 918 aaPredicted RBP5.36□□□□□ -1.55
LIG3-211ENST00000588713 PRMT2P55345 433 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 MAP3K9P80192 1104 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms