RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 STYK1Q6J9G0 422 aa12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 TMC4Q7Z404 712 aa12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 C16orf71Q8IYS4 520 aaPredicted RBP12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 OTUD7AQ8TE49 926 aaPredicted RBP12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 RPGRQ92834 1020 aaKnown RBP12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 MASTLQ96GX5 879 aa12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 CNNM1Q9NRU3 951 aa12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 AKAP2Q9Y2D5 859 aa12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 TTC41PQ6P2S7 1318 aa12.11□□□□□ -0.47
SMCHD1-212ENST00000585229 BBOX1O75936 387 aa12.11□□□□□ -0.47
SMCHD1-212ENST00000585229 MX1P20591 662 aa12.11□□□□□ -0.47
SMCHD1-212ENST00000585229 POLD1P28340 1107 aa12.11□□□□□ -0.47
SMCHD1-212ENST00000585229 PTGER2P43116 358 aa12.11□□□□□ -0.47
SMCHD1-212ENST00000585229 RGS3P49796 1198 aa12.11□□□□□ -0.47
SMCHD1-212ENST00000585229 PDE1AP54750 535 aa12.11□□□□□ -0.47
SMCHD1-212ENST00000585229 METTL24Q5JXM2 366 aa12.11□□□□□ -0.47
SMCHD1-212ENST00000585229 AACSQ86V21 672 aa12.11□□□□□ -0.47
SMCHD1-212ENST00000585229 AK9Q5TCS8 1911 aa12.1□□□□□ -0.47
SMCHD1-212ENST00000585229 SLX4Q8IY92 1834 aa12.1□□□□□ -0.47
SMCHD1-212ENST00000585229 PSDA5PKW4 1024 aaPredicted RBP12.1□□□□□ -0.47
SMCHD1-212ENST00000585229 CHRNDQ07001 517 aa12.1□□□□□ -0.47
SMCHD1-212ENST00000585229 DBNLQ9UJU6 430 aaKnown RBP12.1□□□□□ -0.47
SMCHD1-212ENST00000585229 MINPP1Q9UNW1 487 aa12.1□□□□□ -0.47
SMCHD1-212ENST00000585229 AKAP11Q9UKA4 1901 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 A0A1B0GUL7 405 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 FAM205CA6NFA0 338 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 SEMA3EO15041 775 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 IFIT2P09913 472 aaKnown RBP12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 ALDH1B1P30837 517 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 UBE4AQ14139 1066 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 PUM3Q15397 648 aaKnown RBP12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 ATP2B3Q16720 1220 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 BMP2KLQ5H9B9 411 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 TTC22Q5TAA0 569 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 C2CD5Q86YS7 1000 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 PI4K2BQ8TCG2 481 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 ANKRD2Q9GZV1 360 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 TLR7Q9NYK1 1049 aaKnown RBP12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 SNED1Q8TER0 1413 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 DUOX1Q9NRD9 1551 aa12.09□□□□□ -0.47
SMCHD1-212ENST00000585229 H0YIN7 160 aa12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 GSPT1P15170 499 aaKnown RBP12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 TGFB2P61812 414 aa12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 LPIN2Q92539 896 aa12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 HS3ST6Q96QI5 342 aa12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 DBNDD2Q9BQY9 259 aa12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 CCDC8Q9H0W5 538 aaPredicted RBP12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 ECHDC1Q9NTX5 307 aa12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 PODXL2Q9NZ53 605 aa12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 IRS2Q9Y4H2 1338 aa12.08□□□□□ -0.48
SMCHD1-212ENST00000585229 POTEMA6NI47 508 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 PPEF1O14829 653 aaPredicted RBP12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 MLLT3P42568 568 aaPredicted RBP12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 FOSBP53539 338 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 TIMM10P62072 90 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 VARS2Q5ST30 1063 aaKnown RBP12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 POTEGQ6S5H5 508 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 SP8Q8IXZ3 490 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 CNKSR1Q969H4 720 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 GPATCH3Q96I76 525 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 ZNF512BQ96KM6 892 aaPredicted RBP12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 ATP6V0A2Q9Y487 856 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 CD2APQ9Y5K6 639 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 MYH13Q9UKX3 1938 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 XDHP47989 1333 aa12.07□□□□□ -0.48
SMCHD1-212ENST00000585229 ERC2O15083 957 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 TAF5LO75529 589 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 GLRX3O76003 335 aaKnown RBP12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 SLC5A1P13866 664 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 PRKCSHP14314 528 aaPredicted RBP12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 ATP5JP18859 108 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 KCNA3P22001 575 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 CHRNA5P30532 468 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 C15orf52Q6ZUT6 534 aaKnown RBP12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 HELBQ8NG08 1087 aaPredicted RBP12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 DDX12PQ92771 950 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 XAGE2Q96GT9 111 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 LEMD3Q9Y2U8 911 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 ARFGEF1Q9Y6D6 1849 aa12.06□□□□□ -0.48
SMCHD1-212ENST00000585229 DOCK2Q92608 1830 aa12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 IFIT1P09914 478 aaKnown RBP12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 ARID4AP29374 1257 aaPredicted RBP12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 ADORA1P30542 326 aa12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 TSHZ3Q63HK5 1081 aa12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 PRPF40BQ6NWY9 871 aaKnown RBP12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 C7orf43Q8WVR3 580 aa12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 SPON1Q9HCB6 807 aa12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 PCDHGA10Q9Y5H3 936 aa12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 ZNF804BA4D1E1 1349 aa12.05□□□□□ -0.48
SMCHD1-212ENST00000585229 MYH7P12883 1935 aa12.04□□□□□ -0.48
SMCHD1-212ENST00000585229 DPEP1P16444 411 aa12.04□□□□□ -0.48
SMCHD1-212ENST00000585229 ATP2B4P23634 1241 aa12.04□□□□□ -0.48
SMCHD1-212ENST00000585229 GPSM2P81274 684 aa12.04□□□□□ -0.48
SMCHD1-212ENST00000585229 SLC51AQ86UW1 340 aa12.04□□□□□ -0.48
SMCHD1-212ENST00000585229 ZNF622Q969S3 477 aaKnown RBP eCLIP12.04□□□□□ -0.48
SMCHD1-212ENST00000585229 NEUROD6Q96NK8 337 aa12.04□□□□□ -0.48
SMCHD1-212ENST00000585229 RFX7Q2KHR2 1363 aa12.04□□□□□ -0.48
SMCHD1-212ENST00000585229 TESPA1A2RU30 521 aaPredicted RBP12.03□□□□□ -0.48
SMCHD1-212ENST00000585229 SNAP23O00161 211 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms