RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 BMP1P13497 986 aa7.9□□□□□ -1.14
PTPRM-213ENST00000580949 SCTRP47872 440 aa7.9□□□□□ -1.14
PTPRM-213ENST00000580949 SLC39A6Q13433 755 aa7.9□□□□□ -1.14
PTPRM-213ENST00000580949 LINC00528Q8N1L1 170 aa7.9□□□□□ -1.14
PTPRM-213ENST00000580949 DDX54Q8TDD1 881 aaKnown RBP7.9□□□□□ -1.14
PTPRM-213ENST00000580949 API5Q9BZZ5 524 aaKnown RBP7.9□□□□□ -1.14
PTPRM-213ENST00000580949 USP35Q9P2H5 1018 aa7.9□□□□□ -1.14
PTPRM-213ENST00000580949 ADAMTS7Q9UKP4 1686 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 USP17L5A8MUK1 530 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 ATP9BO43861 1147 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 AAMPQ13685 434 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 OXLD1Q5BKU9 147 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 CCDC30Q5VVM6 783 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 INTS3Q68E01 1043 aaKnown RBP7.89□□□□□ -1.15
PTPRM-213ENST00000580949 TBC1D9Q6ZT07 1266 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 CENPQQ7L2Z9 268 aaPredicted RBP7.89□□□□□ -1.15
PTPRM-213ENST00000580949 CYP2U1Q7Z449 544 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 OSBPL3Q9H4L5 887 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 SENP2Q9HC62 589 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 DDX19BQ9UMR2 479 aa7.89□□□□□ -1.15
PTPRM-213ENST00000580949 DISP2A7MBM2 1401 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 PCDH11XQ9BZA7 1347 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 PCDH11YQ9BZA8 1340 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 F6X3S4 739 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 HSP90AB1P08238 724 aaKnown RBP7.88□□□□□ -1.15
PTPRM-213ENST00000580949 HOXB7P09629 217 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 EIF2S2P20042 333 aaKnown RBP7.88□□□□□ -1.15
PTPRM-213ENST00000580949 PTGIRP43119 386 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 CABP4P57796 275 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 ZNF790Q6PG37 636 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 PLEKHM2Q8IWE5 1019 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 KDF1Q8NAX2 398 aaPredicted RBP7.88□□□□□ -1.15
PTPRM-213ENST00000580949 KIFC2Q96AC6 838 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 AGBL1Q96MI9 1066 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 GMPR2Q9P2T1 348 aaKnown RBP7.88□□□□□ -1.15
PTPRM-213ENST00000580949 PHLPP1O60346 1717 aa7.88□□□□□ -1.15
PTPRM-213ENST00000580949 PTPRCP08575 1304 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 ERVV-2B6SEH9 535 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 ATP5J2-PTCD1G3V325 749 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 SPINT1O43278 529 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 ANXA1P04083 346 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 BMP2P12643 396 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 PROSER3Q2NL68 480 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 EML3Q32P44 896 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 ZNF496Q96IT1 587 aaPredicted RBP7.87□□□□□ -1.15
PTPRM-213ENST00000580949 ZFP42Q96MM3 310 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 PURBQ96QR8 312 aaKnown RBP7.87□□□□□ -1.15
PTPRM-213ENST00000580949 STK31Q9BXU1 1019 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 PPP1R12CQ9BZL4 782 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 PHAXQ9H814 394 aaKnown RBP7.87□□□□□ -1.15
PTPRM-213ENST00000580949 CHPF2Q9P2E5 772 aa7.87□□□□□ -1.15
PTPRM-213ENST00000580949 COL14A1Q05707 1796 aaKnown RBP7.87□□□□□ -1.15
PTPRM-213ENST00000580949 PKD1L3Q7Z443 1732 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 SPATA31A1Q5TZJ5 1347 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 SPATA31A5Q5VU36 1347 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 SPATA31A7Q8IWB4 1347 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 USP17L3A6NCW0 530 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 USP17L4A6NCW7 530 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 PALM3A6NDB9 673 aaPredicted RBP7.86□□□□□ -1.15
PTPRM-213ENST00000580949 HSPA1LP34931 641 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 RELBQ01201 579 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 NCOA4Q13772 614 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 C6orf118Q5T5N4 469 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 USP17L2Q6R6M4 530 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 USP17L1Q7RTZ2 530 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 SIRT2Q8IXJ6 389 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 TRIM47Q96LD4 638 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 C1orf115Q9H7X2 142 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 TFIP11Q9UBB9 837 aaKnown RBP7.86□□□□□ -1.15
PTPRM-213ENST00000580949 MRC1P22897 1456 aa7.86□□□□□ -1.15
PTPRM-213ENST00000580949 JCADQ9P266 1359 aa7.85□□□□□ -1.15
PTPRM-213ENST00000580949 KDM3BQ7LBC6 1761 aa7.85□□□□□ -1.15
PTPRM-213ENST00000580949 SLIT2O94813 1529 aa7.85□□□□□ -1.15
PTPRM-213ENST00000580949 GNRH1P01148 92 aa7.85□□□□□ -1.15
PTPRM-213ENST00000580949 FKBP5Q13451 457 aaPredicted RBP7.85□□□□□ -1.15
PTPRM-213ENST00000580949 HDAC1Q13547 482 aaPredicted RBP7.85□□□□□ -1.15
PTPRM-213ENST00000580949 RWDD1Q9H446 243 aaPredicted RBP7.85□□□□□ -1.15
PTPRM-213ENST00000580949 NOD1Q9Y239 953 aa7.85□□□□□ -1.15
PTPRM-213ENST00000580949 MAFBQ9Y5Q3 323 aaPredicted RBP7.85□□□□□ -1.15
PTPRM-213ENST00000580949 USP16Q9Y5T5 823 aa7.85□□□□□ -1.15
PTPRM-213ENST00000580949 BCL9LQ86UU0 1499 aa7.84□□□□□ -1.15
PTPRM-213ENST00000580949 EXOC5O00471 708 aa7.84□□□□□ -1.15
PTPRM-213ENST00000580949 SNRPA1P09661 255 aaKnown RBP7.84□□□□□ -1.15
PTPRM-213ENST00000580949 SLC4A10Q6U841 1118 aa7.84□□□□□ -1.15
PTPRM-213ENST00000580949 UNC5CLQ8IV45 518 aa7.84□□□□□ -1.15
PTPRM-213ENST00000580949 DEPDC4Q8N2C3 294 aa7.84□□□□□ -1.15
PTPRM-213ENST00000580949 PIGBQ92521 554 aa7.84□□□□□ -1.15
PTPRM-213ENST00000580949 NGLY1Q96IV0 654 aa7.84□□□□□ -1.15
PTPRM-213ENST00000580949 MEIS3Q99687 375 aa7.84□□□□□ -1.15
PTPRM-213ENST00000580949 DBF4Q9UBU7 674 aaPredicted RBP7.84□□□□□ -1.15
PTPRM-213ENST00000580949 SIPA1L3O60292 1781 aaPredicted RBP7.84□□□□□ -1.15
PTPRM-213ENST00000580949 POTECB2RU33 542 aa7.83□□□□□ -1.16
PTPRM-213ENST00000580949 CCT4P50991 539 aaKnown RBP7.83□□□□□ -1.16
PTPRM-213ENST00000580949 LRP10Q7Z4F1 713 aa7.83□□□□□ -1.16
PTPRM-213ENST00000580949 TRIM50Q86XT4 487 aa7.83□□□□□ -1.16
PTPRM-213ENST00000580949 TTC5Q8N0Z6 440 aa7.83□□□□□ -1.16
PTPRM-213ENST00000580949 MARCH10Q8NA82 808 aaPredicted RBP7.83□□□□□ -1.16
PTPRM-213ENST00000580949 C8orf37Q96NL8 207 aa7.83□□□□□ -1.16
PTPRM-213ENST00000580949 FMNL2Q96PY5 1086 aa7.83□□□□□ -1.16
PTPRM-213ENST00000580949 ZNF395Q9H8N7 513 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms