RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 RNF113AO15541 343 aaKnown RBP18.44■□□□□ 0.54
SS18-215ENST00000580642 SGSM2O43147 1006 aa18.44■□□□□ 0.54
SS18-215ENST00000580642 MFAP1P55081 439 aaKnown RBP18.44■□□□□ 0.54
SS18-215ENST00000580642 UBE3CQ15386 1083 aa18.44■□□□□ 0.54
SS18-215ENST00000580642 SPTY2D1Q68D10 685 aaPredicted RBP18.44■□□□□ 0.54
SS18-215ENST00000580642 PODNQ7Z5L7 613 aa18.44■□□□□ 0.54
SS18-215ENST00000580642 TXNRD3Q86VQ6 643 aa18.44■□□□□ 0.54
SS18-215ENST00000580642 TBC1D22AQ8WUA7 517 aa18.44■□□□□ 0.54
SS18-215ENST00000580642 C21orf2O43822 256 aa18.43■□□□□ 0.54
SS18-215ENST00000580642 ANTXR1Q9H6X2 564 aa18.43■□□□□ 0.54
SS18-215ENST00000580642 SUGT1Q9Y2Z0 365 aa18.43■□□□□ 0.54
SS18-215ENST00000580642 FAM205AQ6ZU69 1335 aa18.43■□□□□ 0.54
SS18-215ENST00000580642 AKAP11Q9UKA4 1901 aa18.43■□□□□ 0.54
SS18-215ENST00000580642 KIAA2012Q0VF49 1180 aa18.42■□□□□ 0.54
SS18-215ENST00000580642 EDC3Q96F86 508 aaKnown RBP18.42■□□□□ 0.54
SS18-215ENST00000580642 SOCS7O14512 581 aa18.41■□□□□ 0.54
SS18-215ENST00000580642 ADD2P35612 726 aa18.41■□□□□ 0.54
SS18-215ENST00000580642 FKBP1AP62942 108 aaKnown RBP18.41■□□□□ 0.54
SS18-215ENST00000580642 MCMDC2Q4G0Z9 681 aa18.41■□□□□ 0.54
SS18-215ENST00000580642 ZMYM1Q5SVZ6 1142 aa18.41■□□□□ 0.54
SS18-215ENST00000580642 CWC27Q6UX04 472 aaKnown RBP18.41■□□□□ 0.54
SS18-215ENST00000580642 PI16Q6UXB8 463 aa18.41■□□□□ 0.54
SS18-215ENST00000580642 KIAA1211Q6ZU35 1233 aa18.41■□□□□ 0.54
SS18-215ENST00000580642 APPBP2Q92624 585 aa18.41■□□□□ 0.54
SS18-215ENST00000580642 PIH1D3Q9NQM4 214 aaKnown RBP18.41■□□□□ 0.54
SS18-215ENST00000580642 PPP1R1BQ9UD71 204 aaPredicted RBP18.41■□□□□ 0.54
SS18-215ENST00000580642 LTBP3Q9NS15 1303 aa18.41■□□□□ 0.54
SS18-215ENST00000580642 IL27Q8NEV9 243 aa18.4■□□□□ 0.54
SS18-215ENST00000580642 TSHZ2Q9NRE2 1034 aa18.4■□□□□ 0.54
SS18-215ENST00000580642 LRP2BPQ9P2M1 347 aa18.4■□□□□ 0.54
SS18-215ENST00000580642 NDUFB9Q9Y6M9 179 aa18.4■□□□□ 0.54
SS18-215ENST00000580642 AK9Q5TCS8 1911 aa18.39■□□□□ 0.53
SS18-215ENST00000580642 G3V3G9 751 aa18.39■□□□□ 0.53
SS18-215ENST00000580642 IDH1O75874 414 aaKnown RBP18.39■□□□□ 0.53
SS18-215ENST00000580642 SEC24BO95487 1268 aa18.39■□□□□ 0.53
SS18-215ENST00000580642 NMIQ13287 307 aaPredicted RBP18.39■□□□□ 0.53
SS18-215ENST00000580642 SLC9C2Q5TAH2 1124 aa18.39■□□□□ 0.53
SS18-215ENST00000580642 DCAF8Q5TAQ9 597 aa18.39■□□□□ 0.53
SS18-215ENST00000580642 OLFM4Q6UX06 510 aa18.39■□□□□ 0.53
SS18-215ENST00000580642 ERICH6Q7L0X2 663 aa18.39■□□□□ 0.53
SS18-215ENST00000580642 COL1A1P02452 1464 aaPredicted RBP18.39■□□□□ 0.53
SS18-215ENST00000580642 BRCA1P38398 1863 aaKnown RBP18.38■□□□□ 0.53
SS18-215ENST00000580642 PDE6AP16499 860 aa18.38■□□□□ 0.53
SS18-215ENST00000580642 RBM25P49756 843 aaKnown RBP18.38■□□□□ 0.53
SS18-215ENST00000580642 SLC51AQ86UW1 340 aa18.38■□□□□ 0.53
SS18-215ENST00000580642 USP26Q9BXU7 913 aa18.38■□□□□ 0.53
SS18-215ENST00000580642 RIMBP2O15034 1052 aa18.37■□□□□ 0.53
SS18-215ENST00000580642 GSTO1P78417 241 aa18.37■□□□□ 0.53
SS18-215ENST00000580642 CERS3Q8IU89 383 aa18.37■□□□□ 0.53
SS18-215ENST00000580642 KLHL34Q8N239 644 aa18.37■□□□□ 0.53
SS18-215ENST00000580642 FAM227BQ96M60 508 aa18.37■□□□□ 0.53
SS18-215ENST00000580642 TBC1D32Q96NH3 1257 aa18.37■□□□□ 0.53
SS18-215ENST00000580642 GPR101Q96P66 508 aaPredicted RBP18.37■□□□□ 0.53
SS18-215ENST00000580642 IQSEC3Q9UPP2 1182 aaPredicted RBP18.37■□□□□ 0.53
SS18-215ENST00000580642 A0A0D9SFI3 127 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 TCRBV5S4A2TA0A5A2 114 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 MCCP23508 829 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 STRIP1Q5VSL9 837 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 SLF2Q8IX21 1173 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 C22orf23Q9BZE7 217 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 FHDC1Q9C0D6 1143 aaPredicted RBP18.36■□□□□ 0.53
SS18-215ENST00000580642 TAOK3Q9H2K8 898 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 ANO2Q9NQ90 1003 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 ZNF219Q9P2Y4 722 aaPredicted RBP18.36■□□□□ 0.53
SS18-215ENST00000580642 ABCF2Q9UG63 623 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 BCS1LQ9Y276 419 aa18.36■□□□□ 0.53
SS18-215ENST00000580642 RPAP1Q9BWH6 1393 aaPredicted RBP18.35■□□□□ 0.53
SS18-215ENST00000580642 CCDC171Q6TFL3 1326 aa18.35■□□□□ 0.53
SS18-215ENST00000580642 PPIP5K2O43314 1243 aa18.35■□□□□ 0.53
SS18-215ENST00000580642 LDHBP07195 334 aaKnown RBP18.35■□□□□ 0.53
SS18-215ENST00000580642 CHAF1AQ13111 956 aaPredicted RBP18.35■□□□□ 0.53
SS18-215ENST00000580642 RAI14Q9P0K7 980 aa18.35■□□□□ 0.53
SS18-215ENST00000580642 DOCK2Q92608 1830 aa18.35■□□□□ 0.53
SS18-215ENST00000580642 MAST3O60307 1309 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 ZNF532Q9HCE3 1301 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 LDHCP07864 332 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 GNAT2P19087 354 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 ANAPC15P60006 121 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 TTLL5Q6EMB2 1281 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 MAGEB6Q8N7X4 407 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 NLGN2Q8NFZ4 835 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 NSUN4Q96CB9 384 aaKnown RBP18.34■□□□□ 0.53
SS18-215ENST00000580642 SYT17Q9BSW7 474 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 DSCC1Q9BVC3 393 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 MRIQ9BWK5 157 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 LSG1Q9H089 658 aaKnown RBP18.34■□□□□ 0.53
SS18-215ENST00000580642 CACNA1SQ13698 1873 aa18.34■□□□□ 0.53
SS18-215ENST00000580642 ECE2O60344 883 aa18.33■□□□□ 0.52
SS18-215ENST00000580642 IARSP41252 1262 aaKnown RBP18.33■□□□□ 0.52
SS18-215ENST00000580642 MMP14P50281 582 aa18.33■□□□□ 0.52
SS18-215ENST00000580642 AOC3Q16853 763 aa18.33■□□□□ 0.52
SS18-215ENST00000580642 NAA16Q6N069 864 aaPredicted RBP18.33■□□□□ 0.52
SS18-215ENST00000580642 LARGE2Q8N3Y3 721 aa18.33■□□□□ 0.52
SS18-215ENST00000580642 MAP4K1Q92918 833 aa18.33■□□□□ 0.52
SS18-215ENST00000580642 OSBP2Q969R2 916 aa18.33■□□□□ 0.52
SS18-215ENST00000580642 IL17RAQ96F46 866 aa18.33■□□□□ 0.52
SS18-215ENST00000580642 FAM163AQ96GL9 167 aaPredicted RBP18.33■□□□□ 0.52
SS18-215ENST00000580642 WWC3Q9ULE0 1092 aa18.33■□□□□ 0.52
SS18-215ENST00000580642 MYO3BQ8WXR4 1341 aa18.32■□□□□ 0.52
SS18-215ENST00000580642 USP17L3A6NCW0 530 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms