RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 VRTNQ9H8Y1 702 aa8.3□□□□□ -1.08
COPS3-216ENST00000579716 GNL3LQ9NVN8 582 aaKnown RBP8.3□□□□□ -1.08
COPS3-216ENST00000579716 SWAP70Q9UH65 585 aa8.3□□□□□ -1.08
COPS3-216ENST00000579716 FRMD4BQ9Y2L6 1034 aa8.3□□□□□ -1.08
COPS3-216ENST00000579716 KRTAP4-8A0A0G2JLE6 195 aa8.29□□□□□ -1.08
COPS3-216ENST00000579716 ZNF500O60304 480 aaPredicted RBP8.29□□□□□ -1.08
COPS3-216ENST00000579716 SSFA2P28290 1259 aa8.29□□□□□ -1.08
COPS3-216ENST00000579716 WEE1P30291 646 aa8.29□□□□□ -1.08
COPS3-216ENST00000579716 MKL1Q969V6 931 aa8.29□□□□□ -1.08
COPS3-216ENST00000579716 C11orf16Q9NQ32 467 aa8.29□□□□□ -1.08
COPS3-216ENST00000579716 BSDC1Q9NW68 430 aaPredicted RBP8.29□□□□□ -1.08
COPS3-216ENST00000579716 GNEQ9Y223 722 aaKnown RBP8.29□□□□□ -1.08
COPS3-216ENST00000579716 J3QW42 95 aa8.28□□□□□ -1.08
COPS3-216ENST00000579716 TM4SF5O14894 197 aa8.28□□□□□ -1.08
COPS3-216ENST00000579716 TMEM130Q8N3G9 435 aa8.28□□□□□ -1.08
COPS3-216ENST00000579716 GLMNQ92990 594 aa8.28□□□□□ -1.08
COPS3-216ENST00000579716 SCYL1Q96KG9 808 aa8.28□□□□□ -1.08
COPS3-216ENST00000579716 TLR7Q9NYK1 1049 aaKnown RBP8.28□□□□□ -1.08
COPS3-216ENST00000579716 EGFRP00533 1210 aa8.27□□□□□ -1.09
COPS3-216ENST00000579716 VAMP1P23763 118 aa8.27□□□□□ -1.09
COPS3-216ENST00000579716 PCSK7Q16549 785 aa8.27□□□□□ -1.09
COPS3-216ENST00000579716 EGFLAMQ63HQ2 1017 aa8.27□□□□□ -1.09
COPS3-216ENST00000579716 MSL3Q8N5Y2 521 aaKnown RBP8.27□□□□□ -1.09
COPS3-216ENST00000579716 ZCRB1Q8TBF4 217 aaKnown RBP8.27□□□□□ -1.09
COPS3-216ENST00000579716 GOLGA2P5Q9HBQ8 144 aa8.27□□□□□ -1.09
COPS3-216ENST00000579716 FBXO9Q9UK97 447 aaPredicted RBP8.27□□□□□ -1.09
COPS3-216ENST00000579716 KCNMB2Q9Y691 235 aa8.27□□□□□ -1.09
COPS3-216ENST00000579716 F8W735 103 aaPredicted RBP8.26□□□□□ -1.09
COPS3-216ENST00000579716 STK10O94804 968 aaKnown RBP8.26□□□□□ -1.09
COPS3-216ENST00000579716 RARAP10276 462 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 POLD1P28340 1107 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 ARSDP51689 593 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 GYS2P54840 703 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 NRLP54845 237 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 ZKSCAN2Q63HK3 967 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 MCTP1Q6DN14 999 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 Q6ZS46 218 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 ARMCX6Q7L4S7 300 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 ANKMY2Q8IV38 441 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 OTUD6BQ8N6M0 293 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 MYO19Q96H55 970 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 SPACA7Q96KW9 195 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 BRINP2Q9C0B6 783 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 AKTIPQ9H8T0 292 aa8.26□□□□□ -1.09
COPS3-216ENST00000579716 RTCBQ9Y3I0 505 aaKnown RBP8.26□□□□□ -1.09
COPS3-216ENST00000579716 FSTP19883 344 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 BDNFP23560 247 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 BIRC2Q13490 618 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 C11orf91Q3C1V1 193 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 FAM26DQ5JW98 314 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 SDE2Q6IQ49 451 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 ADAMTSL4Q6UY14 1074 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 DNAJC14Q6Y2X3 702 aaPredicted RBP8.25□□□□□ -1.09
COPS3-216ENST00000579716 C11orf96Q7Z7L8 435 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 CCDC146Q8IYE0 955 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 GIPC2Q8TF65 315 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 SNRNP27Q8WVK2 155 aaKnown RBP8.25□□□□□ -1.09
COPS3-216ENST00000579716 PPP1R12CQ9BZL4 782 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 HDAC5Q9UQL6 1122 aa8.25□□□□□ -1.09
COPS3-216ENST00000579716 RBM19Q9Y4C8 960 aaKnown RBP8.25□□□□□ -1.09
COPS3-216ENST00000579716 COL17A1Q9UMD9 1497 aaPredicted RBP8.25□□□□□ -1.09
COPS3-216ENST00000579716 LOC102724428A0A0B4J2F2 783 aa8.24□□□□□ -1.09
COPS3-216ENST00000579716 APPP05067 770 aa8.24□□□□□ -1.09
COPS3-216ENST00000579716 CD97P48960 835 aa8.24□□□□□ -1.09
COPS3-216ENST00000579716 SIK1P57059 783 aa8.24□□□□□ -1.09
COPS3-216ENST00000579716 NBPF9Q3BBW0 867 aa8.24□□□□□ -1.09
COPS3-216ENST00000579716 PLD4Q96BZ4 506 aa8.24□□□□□ -1.09
COPS3-216ENST00000579716 UBL7Q96S82 380 aaPredicted RBP8.24□□□□□ -1.09
COPS3-216ENST00000579716 LNPKQ9C0E8 428 aa8.24□□□□□ -1.09
COPS3-216ENST00000579716 TMX4Q9H1E5 349 aaPredicted RBP8.24□□□□□ -1.09
COPS3-216ENST00000579716 GABBR1Q9UBS5 961 aa8.24□□□□□ -1.09
COPS3-216ENST00000579716 SH3BP1Q9Y3L3 701 aa8.24□□□□□ -1.09
COPS3-216ENST00000579716 USP17L15C9J2P7 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L10C9JJH3 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L13C9JLJ4 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L12C9JPN9 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L11C9JVI0 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L21D6R901 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L18D6R9N7 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L22D6RA61 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L17D6RBQ6 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L19D6RCP7 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L20D6RJB6 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 DHX16O60231 1041 aaKnown RBP8.23□□□□□ -1.09
COPS3-216ENST00000579716 MMP20O60882 483 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 ADAMTS4O75173 837 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 EPB42P16452 691 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 SSTR4P31391 388 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 RHBDL3P58872 404 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 XPCQ01831 940 aaPredicted RBP8.23□□□□□ -1.09
COPS3-216ENST00000579716 USP17L24Q0WX57 530 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 CDCA8Q53HL2 280 aa8.23□□□□□ -1.09
COPS3-216ENST00000579716 LARP1Q6PKG0 1096 aaKnown RBP8.23□□□□□ -1.09
COPS3-216ENST00000579716 CARNS1A5YM72 827 aa8.22□□□□□ -1.09
COPS3-216ENST00000579716 GOLGA6CA6NDK9 693 aa8.22□□□□□ -1.09
COPS3-216ENST00000579716 GOLGA6BA6NDN3 693 aa8.22□□□□□ -1.09
COPS3-216ENST00000579716 FAM196BA6NMK8 535 aa8.22□□□□□ -1.09
COPS3-216ENST00000579716 GOLGA6DP0CG33 693 aa8.22□□□□□ -1.09
COPS3-216ENST00000579716 HOXD8P13378 290 aaPredicted RBP8.22□□□□□ -1.09
COPS3-216ENST00000579716 GET4Q7L5D6 327 aaPredicted RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms