RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PITPNM2Q9BZ72 1349 aa12.64□□□□□ -0.39
SS18-210ENST00000578700 PCCAP05165 728 aaPredicted RBP12.64□□□□□ -0.39
SS18-210ENST00000578700 TM4SF4P48230 202 aa12.64□□□□□ -0.39
SS18-210ENST00000578700 FKBP5Q13451 457 aaPredicted RBP12.64□□□□□ -0.39
SS18-210ENST00000578700 INTS3Q68E01 1043 aaKnown RBP12.64□□□□□ -0.39
SS18-210ENST00000578700 FBXO46Q6PJ61 603 aaPredicted RBP12.64□□□□□ -0.39
SS18-210ENST00000578700 ARMC9Q7Z3E5 817 aa12.64□□□□□ -0.39
SS18-210ENST00000578700 CCDC191Q8NCU4 936 aa12.64□□□□□ -0.39
SS18-210ENST00000578700 R3HDMLQ9H3Y0 253 aa12.64□□□□□ -0.39
SS18-210ENST00000578700 WNT10BO00744 389 aa12.63□□□□□ -0.39
SS18-210ENST00000578700 FKTNO75072 461 aa12.63□□□□□ -0.39
SS18-210ENST00000578700 SASH1O94885 1247 aa12.63□□□□□ -0.39
SS18-210ENST00000578700 PTPN12Q05209 780 aaKnown RBP12.63□□□□□ -0.39
SS18-210ENST00000578700 FLIIQ13045 1269 aa12.63□□□□□ -0.39
SS18-210ENST00000578700 CDC5LQ99459 802 aaKnown RBP12.63□□□□□ -0.39
SS18-210ENST00000578700 ZBTB40Q9NUA8 1239 aa12.63□□□□□ -0.39
SS18-210ENST00000578700 FZD1Q9UP38 647 aa12.63□□□□□ -0.39
SS18-210ENST00000578700 MYH3P11055 1940 aa12.62□□□□□ -0.39
SS18-210ENST00000578700 SREBF2Q12772 1141 aa12.62□□□□□ -0.39
SS18-210ENST00000578700 ANGEL1Q9UNK9 670 aaKnown RBP12.62□□□□□ -0.39
SS18-210ENST00000578700 MINPP1Q9UNW1 487 aa12.62□□□□□ -0.39
SS18-210ENST00000578700 ZNF646O15015 1829 aaPredicted RBP12.61□□□□□ -0.39
SS18-210ENST00000578700 ZBTB7BO15156 539 aaPredicted RBP12.61□□□□□ -0.39
SS18-210ENST00000578700 DDX58O95786 925 aaKnown RBP12.61□□□□□ -0.39
SS18-210ENST00000578700 HDAC1Q13547 482 aaPredicted RBP12.61□□□□□ -0.39
SS18-210ENST00000578700 DACT2Q5SW24 774 aa12.61□□□□□ -0.39
SS18-210ENST00000578700 TTLL5Q6EMB2 1281 aa12.61□□□□□ -0.39
SS18-210ENST00000578700 SLC4A10Q6U841 1118 aa12.61□□□□□ -0.39
SS18-210ENST00000578700 KIAA0825Q8IV33 1275 aa12.61□□□□□ -0.39
SS18-210ENST00000578700 METTL22Q9BUU2 404 aaPredicted RBP12.61□□□□□ -0.39
SS18-210ENST00000578700 TRIM17Q9Y577 477 aa12.61□□□□□ -0.39
SS18-210ENST00000578700 PCDHB15Q9Y5E8 787 aa12.61□□□□□ -0.39
SS18-210ENST00000578700 BRCA2P51587 3418 aa12.61□□□□□ -0.39
SS18-210ENST00000578700 CTSWP56202 376 aa12.6□□□□□ -0.39
SS18-210ENST00000578700 STRIP1Q5VSL9 837 aa12.6□□□□□ -0.39
SS18-210ENST00000578700 TXNRD3Q86VQ6 643 aa12.6□□□□□ -0.39
SS18-210ENST00000578700 SLC10A4Q96EP9 437 aa12.6□□□□□ -0.39
SS18-210ENST00000578700 COA1Q9GZY4 146 aa12.6□□□□□ -0.39
SS18-210ENST00000578700 GREM2Q9H772 168 aa12.6□□□□□ -0.39
SS18-210ENST00000578700 BSDC1Q9NW68 430 aaPredicted RBP12.6□□□□□ -0.39
SS18-210ENST00000578700 MAP3K2Q9Y2U5 619 aa12.6□□□□□ -0.39
SS18-210ENST00000578700 IGHDP01880 384 aa12.59□□□□□ -0.39
SS18-210ENST00000578700 GTF2IP78347 998 aa12.59□□□□□ -0.39
SS18-210ENST00000578700 SPRYD7Q5W111 196 aa12.59□□□□□ -0.39
SS18-210ENST00000578700 TTLL11Q8NHH1 800 aa12.59□□□□□ -0.39
SS18-210ENST00000578700 TSHZ2Q9NRE2 1034 aa12.59□□□□□ -0.39
SS18-210ENST00000578700 SPEF2Q9C093 1822 aa12.59□□□□□ -0.39
SS18-210ENST00000578700 GNAI3P08754 354 aa12.58□□□□□ -0.4
SS18-210ENST00000578700 IGHMBP2P38935 993 aaKnown RBP12.58□□□□□ -0.4
SS18-210ENST00000578700 NOM1Q5C9Z4 860 aaKnown RBP12.58□□□□□ -0.4
SS18-210ENST00000578700 G2E3Q7L622 706 aa12.58□□□□□ -0.4
SS18-210ENST00000578700 APOBEC3FQ8IUX4 373 aaKnown RBP12.58□□□□□ -0.4
SS18-210ENST00000578700 GCC1Q96CN9 775 aa12.58□□□□□ -0.4
SS18-210ENST00000578700 RNF216Q9NWF9 866 aaPredicted RBP12.58□□□□□ -0.4
SS18-210ENST00000578700 ZBTB47Q9UFB7 747 aaPredicted RBP12.58□□□□□ -0.4
SS18-210ENST00000578700 HDAC5Q9UQL6 1122 aa12.58□□□□□ -0.4
SS18-210ENST00000578700 LEMD3Q9Y2U8 911 aa12.58□□□□□ -0.4
SS18-210ENST00000578700 MYO3BQ8WXR4 1341 aa12.58□□□□□ -0.4
SS18-210ENST00000578700 MED23Q9ULK4 1368 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 LAMB1P07942 1786 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 PI4KAP2A4QPH2 592 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 POTEFA5A3E0 1075 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 F8W031 263 aaPredicted RBP12.57□□□□□ -0.4
SS18-210ENST00000578700 HMMRO75330 724 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 ALDH1A1P00352 501 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 KLRK1P26718 216 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 KCNJ4P48050 445 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 NEXNQ0ZGT2 675 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 CWF19L2Q2TBE0 894 aaKnown RBP12.57□□□□□ -0.4
SS18-210ENST00000578700 PI4KAP1Q8N8J0 262 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 MPHOSPH8Q99549 860 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 DEFB129Q9H1M3 183 aa12.57□□□□□ -0.4
SS18-210ENST00000578700 KIAA0100Q14667 2235 aaKnown RBP12.57□□□□□ -0.4
SS18-210ENST00000578700 MANSC4A6NHS7 340 aaPredicted RBP12.56□□□□□ -0.4
SS18-210ENST00000578700 IGKV5-2P06315 115 aa12.56□□□□□ -0.4
SS18-210ENST00000578700 DLGAP5Q15398 846 aa12.56□□□□□ -0.4
SS18-210ENST00000578700 LDLRAD1Q5T700 205 aa12.56□□□□□ -0.4
SS18-210ENST00000578700 KSR2Q6VAB6 950 aa12.56□□□□□ -0.4
SS18-210ENST00000578700 OTOP1Q7RTM1 612 aa12.56□□□□□ -0.4
SS18-210ENST00000578700 IFNL1Q8IU54 200 aa12.56□□□□□ -0.4
SS18-210ENST00000578700 RPAP2Q8IXW5 612 aaPredicted RBP12.56□□□□□ -0.4
SS18-210ENST00000578700 CLMNQ96JQ2 1002 aa12.56□□□□□ -0.4
SS18-210ENST00000578700 SRCIN1Q9C0H9 1055 aa12.56□□□□□ -0.4
SS18-210ENST00000578700 ZNF804BA4D1E1 1349 aa12.56□□□□□ -0.4
SS18-210ENST00000578700 ECM29Q5VYK3 1845 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 CLRN2A0PK11 232 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 F6X3S4 739 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 PPP1R12BO60237 982 aaPredicted RBP12.55□□□□□ -0.4
SS18-210ENST00000578700 GNAI2P04899 355 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 ITGA6P23229 1130 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 RGS3P49796 1198 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 INHBEP58166 350 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 HABP4Q5JVS0 413 aaKnown RBP12.55□□□□□ -0.4
SS18-210ENST00000578700 UBE3BQ7Z3V4 1068 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 CD99L2Q8TCZ2 262 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 DNAAF4Q8WXU2 420 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 VEZTQ9HBM0 779 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 PCDHAC2Q9Y5I4 1007 aa12.55□□□□□ -0.4
SS18-210ENST00000578700 RBBP6Q7Z6E9 1792 aaKnown RBP12.54□□□□□ -0.4
SS18-210ENST00000578700 SNAP23O00161 211 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms