RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 CD209Q9NNX6 404 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 CNNM1Q9NRU3 951 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 SZT2Q5T011 3432 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 C15orf52Q6ZUT6 534 aaKnown RBP17.29■□□□□ 0.36
CCDC40-216ENST00000576241 KIAA0825Q8IV33 1275 aa17.29■□□□□ 0.36
CCDC40-216ENST00000576241 TRIOBPQ9H2D6 2365 aa17.29■□□□□ 0.36
CCDC40-216ENST00000576241 SNAP23O00161 211 aa17.28■□□□□ 0.36
CCDC40-216ENST00000576241 WNT10BO00744 389 aa17.28■□□□□ 0.36
CCDC40-216ENST00000576241 PLIN1O60240 522 aa17.28■□□□□ 0.36
CCDC40-216ENST00000576241 ZNF594Q96JF6 807 aaPredicted RBP17.28■□□□□ 0.36
CCDC40-216ENST00000576241 KIAA0100Q14667 2235 aaKnown RBP17.27■□□□□ 0.36
CCDC40-216ENST00000576241 SASH1O94885 1247 aa17.27■□□□□ 0.36
CCDC40-216ENST00000576241 NF2P35240 595 aa17.27■□□□□ 0.36
CCDC40-216ENST00000576241 SCAF8Q9UPN6 1271 aaKnown RBP17.27■□□□□ 0.36
CCDC40-216ENST00000576241 PAPPA2Q9BXP8 1791 aa17.27■□□□□ 0.35
CCDC40-216ENST00000576241 PTPRCP08575 1304 aa17.26■□□□□ 0.35
CCDC40-216ENST00000576241 IRS2Q9Y4H2 1338 aa17.26■□□□□ 0.35
CCDC40-216ENST00000576241 NOM1Q5C9Z4 860 aaKnown RBP17.26■□□□□ 0.35
CCDC40-216ENST00000576241 APOBEC3FQ8IUX4 373 aaKnown RBP17.26■□□□□ 0.35
CCDC40-216ENST00000576241 MRPL50Q8N5N7 158 aaKnown RBP17.26■□□□□ 0.35
CCDC40-216ENST00000576241 SUCLG2Q96I99 432 aa17.26■□□□□ 0.35
CCDC40-216ENST00000576241 FKTNO75072 461 aa17.25■□□□□ 0.35
CCDC40-216ENST00000576241 NBPF7P0C2Y1 421 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-216ENST00000576241 IL1R1P14778 569 aa17.25■□□□□ 0.35
CCDC40-216ENST00000576241 TTLL12Q14166 644 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-216ENST00000576241 DLGAP5Q15398 846 aa17.25■□□□□ 0.35
CCDC40-216ENST00000576241 PRAMEF18Q5VWM3 479 aa17.25■□□□□ 0.35
CCDC40-216ENST00000576241 SLC17A8Q8NDX2 589 aa17.25■□□□□ 0.35
CCDC40-216ENST00000576241 CEP290O15078 2479 aa17.25■□□□□ 0.35
CCDC40-216ENST00000576241 UTYO14607 1347 aa17.24■□□□□ 0.35
CCDC40-216ENST00000576241 SLFN5Q08AF3 891 aa17.24■□□□□ 0.35
CCDC40-216ENST00000576241 R3HDMLQ9H3Y0 253 aa17.24■□□□□ 0.35
CCDC40-216ENST00000576241 RBBP6Q7Z6E9 1792 aaKnown RBP17.24■□□□□ 0.35
CCDC40-216ENST00000576241 HTTP42858 3142 aa17.24■□□□□ 0.35
CCDC40-216ENST00000576241 ZNF646O15015 1829 aaPredicted RBP17.24■□□□□ 0.35
CCDC40-216ENST00000576241 TM4SF4P48230 202 aa17.23■□□□□ 0.35
CCDC40-216ENST00000576241 FKBP1AP62942 108 aaKnown RBP17.23■□□□□ 0.35
CCDC40-216ENST00000576241 INTS3Q68E01 1043 aaKnown RBP17.23■□□□□ 0.35
CCDC40-216ENST00000576241 MOB2Q70IA6 237 aa17.23■□□□□ 0.35
CCDC40-216ENST00000576241 CERS5Q8N5B7 392 aa17.23■□□□□ 0.35
CCDC40-216ENST00000576241 SSH1Q8WYL5 1049 aa17.23■□□□□ 0.35
CCDC40-216ENST00000576241 BICC1Q9H694 974 aaKnown RBP17.23■□□□□ 0.35
CCDC40-216ENST00000576241 CUL9Q8IWT3 2517 aa17.22■□□□□ 0.35
CCDC40-216ENST00000576241 F8W031 263 aaPredicted RBP17.22■□□□□ 0.35
CCDC40-216ENST00000576241 UBE2Q2LH0YL09 131 aa17.22■□□□□ 0.35
CCDC40-216ENST00000576241 MYO1BO43795 1136 aa17.22■□□□□ 0.35
CCDC40-216ENST00000576241 EN2P19622 333 aaPredicted RBP17.22■□□□□ 0.35
CCDC40-216ENST00000576241 UBE4AQ14139 1066 aa17.22■□□□□ 0.35
CCDC40-216ENST00000576241 KAZALD1Q96I82 304 aa17.22■□□□□ 0.35
CCDC40-216ENST00000576241 ZBED3Q96IU2 234 aaPredicted RBP17.22■□□□□ 0.35
CCDC40-216ENST00000576241 MROH5Q6ZUA9 1318 aa17.21■□□□□ 0.35
CCDC40-216ENST00000576241 CENPFP49454 3210 aa17.21■□□□□ 0.35
CCDC40-216ENST00000576241 ALDH1L2Q3SY69 923 aa17.21■□□□□ 0.35
CCDC40-216ENST00000576241 RABL6Q3YEC7 729 aaPredicted RBP17.21■□□□□ 0.35
CCDC40-216ENST00000576241 ARMC9Q7Z3E5 817 aa17.21■□□□□ 0.35
CCDC40-216ENST00000576241 MTMR14Q8NCE2 650 aa17.21■□□□□ 0.35
CCDC40-216ENST00000576241 PUS3Q9BZE2 481 aaKnown RBP17.21■□□□□ 0.35
CCDC40-216ENST00000576241 SMC4Q9NTJ3 1288 aa17.21■□□□□ 0.35
CCDC40-216ENST00000576241 JAG2Q9Y219 1238 aa17.21■□□□□ 0.35
CCDC40-216ENST00000576241 COL1A1P02452 1464 aaPredicted RBP17.2■□□□□ 0.34
CCDC40-216ENST00000576241 HIBADHP31937 336 aaKnown RBP17.2■□□□□ 0.34
CCDC40-216ENST00000576241 TRIM17Q9Y577 477 aa17.2■□□□□ 0.34
CCDC40-216ENST00000576241 A0A1B0GUL6 1792 aa17.2■□□□□ 0.34
CCDC40-216ENST00000576241 BRCA2P51587 3418 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 GYG1P46976 350 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 RBM5P52756 815 aaKnown RBP eCLIP17.19■□□□□ 0.34
CCDC40-216ENST00000576241 MKRN3Q13064 507 aaKnown RBP17.19■□□□□ 0.34
CCDC40-216ENST00000576241 CFAP100Q494V2 611 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 METTL24Q5JXM2 366 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 VPS37DQ86XT2 251 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 ANKRD44Q8N8A2 993 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 CDCA7LQ96GN5 454 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 DEFB129Q9H1M3 183 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 RIPOR2Q9Y4F9 1068 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 PPP2R3BQ9Y5P8 575 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 FAM205AQ6ZU69 1335 aa17.19■□□□□ 0.34
CCDC40-216ENST00000576241 SPDYE2BA6NHP3 402 aa17.18■□□□□ 0.34
CCDC40-216ENST00000576241 SPDYE6P0CI01 402 aa17.18■□□□□ 0.34
CCDC40-216ENST00000576241 PRKG1Q13976 671 aa17.18■□□□□ 0.34
CCDC40-216ENST00000576241 MFSD14BQ5SR56 506 aa17.18■□□□□ 0.34
CCDC40-216ENST00000576241 TDRD7Q8NHU6 1098 aaKnown RBP17.18■□□□□ 0.34
CCDC40-216ENST00000576241 CFHR5Q9BXR6 569 aa17.18■□□□□ 0.34
CCDC40-216ENST00000576241 A0A0C4DFX4 3053 aa17.17■□□□□ 0.34
CCDC40-216ENST00000576241 CLRN2A0PK11 232 aa17.17■□□□□ 0.34
CCDC40-216ENST00000576241 CAVIN4Q5BKX8 364 aa17.17■□□□□ 0.34
CCDC40-216ENST00000576241 OTOP1Q7RTM1 612 aa17.17■□□□□ 0.34
CCDC40-216ENST00000576241 OTUD5Q96G74 571 aa17.17■□□□□ 0.34
CCDC40-216ENST00000576241 FAM84BQ96KN1 310 aaPredicted RBP17.17■□□□□ 0.34
CCDC40-216ENST00000576241 USP44Q9H0E7 712 aa17.17■□□□□ 0.34
CCDC40-216ENST00000576241 VEZTQ9HBM0 779 aa17.17■□□□□ 0.34
CCDC40-216ENST00000576241 CCER2I3L3R5 266 aa17.16■□□□□ 0.34
CCDC40-216ENST00000576241 FRAT2O75474 233 aaPredicted RBP17.16■□□□□ 0.34
CCDC40-216ENST00000576241 CT47B1P0C2W7 299 aaPredicted RBP17.16■□□□□ 0.34
CCDC40-216ENST00000576241 LRRC24Q50LG9 513 aa17.16■□□□□ 0.34
CCDC40-216ENST00000576241 PRMT6Q96LA8 375 aaPredicted RBP17.16■□□□□ 0.34
CCDC40-216ENST00000576241 ANGEL1Q9UNK9 670 aaKnown RBP17.16■□□□□ 0.34
CCDC40-216ENST00000576241 PCDHAC2Q9Y5I4 1007 aa17.16■□□□□ 0.34
CCDC40-216ENST00000576241 H0YGN5 161 aa17.15■□□□□ 0.34
CCDC40-216ENST00000576241 PPP1R12BO60237 982 aaPredicted RBP17.15■□□□□ 0.34
CCDC40-216ENST00000576241 PDE8BO95263 885 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms