RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 LNPKQ9C0E8 428 aa10.51□□□□□ -0.73
NUP88-211ENST00000575976 NMRK2Q9NPI5 230 aa10.51□□□□□ -0.73
NUP88-211ENST00000575976 ZBTB47Q9UFB7 747 aaPredicted RBP10.51□□□□□ -0.73
NUP88-211ENST00000575976 ZNF541Q9H0D2 1346 aa10.51□□□□□ -0.73
NUP88-211ENST00000575976 PSMD14O00487 310 aa10.5□□□□□ -0.73
NUP88-211ENST00000575976 FRAT2O75474 233 aaPredicted RBP10.5□□□□□ -0.73
NUP88-211ENST00000575976 NUCB1Q02818 461 aa10.5□□□□□ -0.73
NUP88-211ENST00000575976 TTC39AQ5SRH9 613 aa10.5□□□□□ -0.73
NUP88-211ENST00000575976 TTLL5Q6EMB2 1281 aa10.5□□□□□ -0.73
NUP88-211ENST00000575976 CHD1LQ86WJ1 897 aa10.5□□□□□ -0.73
NUP88-211ENST00000575976 OTUD7AQ8TE49 926 aaPredicted RBP10.5□□□□□ -0.73
NUP88-211ENST00000575976 FBXW7Q969H0 707 aa10.5□□□□□ -0.73
NUP88-211ENST00000575976 GNL3LQ9NVN8 582 aaKnown RBP10.5□□□□□ -0.73
NUP88-211ENST00000575976 JAG2Q9Y219 1238 aa10.5□□□□□ -0.73
NUP88-211ENST00000575976 GJA3Q9Y6H8 435 aa10.5□□□□□ -0.73
NUP88-211ENST00000575976 DICER1Q9UPY3 1922 aaKnown RBP10.5□□□□□ -0.73
NUP88-211ENST00000575976 USP17L3A6NCW0 530 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 USP17L4A6NCW7 530 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 DDNO94850 711 aaPredicted RBP10.49□□□□□ -0.73
NUP88-211ENST00000575976 VIL1P09327 827 aaKnown RBP10.49□□□□□ -0.73
NUP88-211ENST00000575976 UQCRFS1P1P0C7P4 283 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 ARID4AP29374 1257 aaPredicted RBP10.49□□□□□ -0.73
NUP88-211ENST00000575976 CHAF1AQ13111 956 aaPredicted RBP10.49□□□□□ -0.73
NUP88-211ENST00000575976 RASGRF1Q13972 1273 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 SCARF1Q14162 830 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 STRIP1Q5VSL9 837 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 CENPQQ7L2Z9 268 aaPredicted RBP10.49□□□□□ -0.73
NUP88-211ENST00000575976 USP17L1Q7RTZ2 530 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 MXD3Q9BW11 206 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 ZBTB12Q9Y330 459 aaPredicted RBP10.49□□□□□ -0.73
NUP88-211ENST00000575976 FAM205AQ6ZU69 1335 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 ZC3H4Q9UPT8 1303 aaKnown RBP10.49□□□□□ -0.73
NUP88-211ENST00000575976 ARAP2Q8WZ64 1704 aa10.49□□□□□ -0.73
NUP88-211ENST00000575976 GLTPD2A6NH11 291 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 SEMA3EO15041 775 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 ZBTB22O15209 634 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 MCAMP43121 646 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 TNIP1Q15025 636 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 DACT2Q5SW24 774 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 DPY19L2Q6NUT2 758 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 PI16Q6UXB8 463 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 SMC1BQ8NDV3 1235 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 ZNF512BQ96KM6 892 aaPredicted RBP10.48□□□□□ -0.73
NUP88-211ENST00000575976 HMG20BQ9P0W2 317 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 DENND2AQ9ULE3 1009 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 SALL3Q9BXA9 1300 aa10.48□□□□□ -0.73
NUP88-211ENST00000575976 COL1A1P02452 1464 aaPredicted RBP10.48□□□□□ -0.73
NUP88-211ENST00000575976 TIAM2Q8IVF5 1701 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 SCN9AQ15858 1988 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 HSPA1AP0DMV8 641 aaKnown RBP10.47□□□□□ -0.73
NUP88-211ENST00000575976 HSPA1BP0DMV9 641 aaKnown RBP10.47□□□□□ -0.73
NUP88-211ENST00000575976 ATP5JP18859 108 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 PDE4AP27815 886 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 TSHZ3Q63HK5 1081 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 RSBN1LQ6PCB5 846 aaPredicted RBP10.47□□□□□ -0.73
NUP88-211ENST00000575976 GPC2Q8N158 579 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 CERS5Q8N5B7 392 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 SPATA5Q8NB90 893 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 BOLA2Q9H3K6 86 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 SNRKQ9NRH2 765 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 ECHDC1Q9NTX5 307 aa10.47□□□□□ -0.73
NUP88-211ENST00000575976 MX1P20591 662 aa10.46□□□□□ -0.73
NUP88-211ENST00000575976 ZAP70P43403 619 aa10.46□□□□□ -0.73
NUP88-211ENST00000575976 GMPSP49915 693 aaPredicted RBP10.46□□□□□ -0.73
NUP88-211ENST00000575976 FKBP1AP62942 108 aaKnown RBP10.46□□□□□ -0.73
NUP88-211ENST00000575976 GRIK5Q16478 980 aa10.46□□□□□ -0.73
NUP88-211ENST00000575976 WDR66Q8TBY9 1149 aa10.46□□□□□ -0.73
NUP88-211ENST00000575976 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.46□□□□□ -0.73
NUP88-211ENST00000575976 GPATCH3Q96I76 525 aa10.46□□□□□ -0.73
NUP88-211ENST00000575976 GMLQ99445 158 aa10.46□□□□□ -0.73
NUP88-211ENST00000575976 NDUFB9Q9Y6M9 179 aa10.46□□□□□ -0.73
NUP88-211ENST00000575976 PDS5AQ29RF7 1337 aaKnown RBP10.45□□□□□ -0.74
NUP88-211ENST00000575976 TTC41PQ6P2S7 1318 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 CYP2E1P05181 493 aaPredicted RBP10.45□□□□□ -0.74
NUP88-211ENST00000575976 SCNN1DP51172 638 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 PDE1AP54750 535 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 MFSD14BQ5SR56 506 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 TBC1D9Q6ZT07 1266 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 PLEKHM2Q8IWE5 1019 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 AGBL3Q8NEM8 1001 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 PI4K2BQ8TCG2 481 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 TBC1D22AQ8WUA7 517 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 RRAGCQ9HB90 399 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 STAP2Q9UGK3 403 aa10.45□□□□□ -0.74
NUP88-211ENST00000575976 MYO3BQ8WXR4 1341 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 SALL1Q9NSC2 1324 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 SHTN1A0MZ66 631 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 POTECB2RU33 542 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 F8W031 263 aaPredicted RBP10.44□□□□□ -0.74
NUP88-211ENST00000575976 RPS12P25398 132 aaKnown RBP10.44□□□□□ -0.74
NUP88-211ENST00000575976 PRDX5P30044 214 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 SKAP1Q86WV1 359 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 KIAA0825Q8IV33 1275 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 DPF2Q92785 391 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 EDC3Q96F86 508 aaKnown RBP10.44□□□□□ -0.74
NUP88-211ENST00000575976 L3MBTL3Q96JM7 780 aaPredicted RBP10.44□□□□□ -0.74
NUP88-211ENST00000575976 DNAJC2Q99543 621 aaKnown RBP10.44□□□□□ -0.74
NUP88-211ENST00000575976 HAUS7Q99871 368 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 ANTXR1Q9H6X2 564 aa10.44□□□□□ -0.74
NUP88-211ENST00000575976 ABCF2Q9UG63 623 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms