RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 BCAMP50895 628 aa11.76□□□□□ -0.53
CCDC40-214ENST00000575431 HDAC1Q13547 482 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-214ENST00000575431 CCDC158Q5M9N0 1113 aa11.76□□□□□ -0.53
CCDC40-214ENST00000575431 CCDC102BQ68D86 513 aa11.76□□□□□ -0.53
CCDC40-214ENST00000575431 RHPN1Q8TCX5 695 aa11.76□□□□□ -0.53
CCDC40-214ENST00000575431 FBXW7Q969H0 707 aa11.76□□□□□ -0.53
CCDC40-214ENST00000575431 HDAC9Q9UKV0 1011 aa11.76□□□□□ -0.53
CCDC40-214ENST00000575431 DENND2AQ9ULE3 1009 aa11.76□□□□□ -0.53
CCDC40-214ENST00000575431 ZBTB12Q9Y330 459 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-214ENST00000575431 PCDHB15Q9Y5E8 787 aa11.76□□□□□ -0.53
CCDC40-214ENST00000575431 RBM46Q8TBY0 533 aaKnown RBP11.75□□□□□ -0.53
CCDC40-214ENST00000575431 WDR66Q8TBY9 1149 aa11.75□□□□□ -0.53
CCDC40-214ENST00000575431 ZNF512BQ96KM6 892 aaPredicted RBP11.75□□□□□ -0.53
CCDC40-214ENST00000575431 GMLQ99445 158 aa11.75□□□□□ -0.53
CCDC40-214ENST00000575431 LRRCC1Q9C099 1032 aa11.75□□□□□ -0.53
CCDC40-214ENST00000575431 SUGT1Q9Y2Z0 365 aa11.75□□□□□ -0.53
CCDC40-214ENST00000575431 PDS5AQ29RF7 1337 aaKnown RBP11.75□□□□□ -0.53
CCDC40-214ENST00000575431 IGSF3O75054 1194 aa11.74□□□□□ -0.53
CCDC40-214ENST00000575431 EPS15P42566 896 aa11.74□□□□□ -0.53
CCDC40-214ENST00000575431 ZNF280AP59817 542 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-214ENST00000575431 MFSD14BQ5SR56 506 aa11.74□□□□□ -0.53
CCDC40-214ENST00000575431 LDHDQ86WU2 507 aa11.74□□□□□ -0.53
CCDC40-214ENST00000575431 MICALL2Q8IY33 904 aa11.74□□□□□ -0.53
CCDC40-214ENST00000575431 ZGPATQ8N5A5 531 aaKnown RBP11.74□□□□□ -0.53
CCDC40-214ENST00000575431 SMC1BQ8NDV3 1235 aa11.74□□□□□ -0.53
CCDC40-214ENST00000575431 EXOC6Q8TAG9 804 aa11.74□□□□□ -0.53
CCDC40-214ENST00000575431 ZC3H15Q8WU90 426 aaKnown RBP11.74□□□□□ -0.53
CCDC40-214ENST00000575431 GCC1Q96CN9 775 aa11.74□□□□□ -0.53
CCDC40-214ENST00000575431 RWDD1Q9H446 243 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-214ENST00000575431 ZNF646O15015 1829 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-214ENST00000575431 MAST3O60307 1309 aa11.73□□□□□ -0.53
CCDC40-214ENST00000575431 ADORA1P30542 326 aa11.73□□□□□ -0.53
CCDC40-214ENST00000575431 PHKA1P46020 1223 aa11.73□□□□□ -0.53
CCDC40-214ENST00000575431 FSTL1Q12841 308 aa11.73□□□□□ -0.53
CCDC40-214ENST00000575431 GOLGB1Q14789 3259 aaKnown RBP11.73□□□□□ -0.53
CCDC40-214ENST00000575431 AACSQ86V21 672 aa11.73□□□□□ -0.53
CCDC40-214ENST00000575431 EAF2Q96CJ1 260 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-214ENST00000575431 SALL1Q9NSC2 1324 aa11.73□□□□□ -0.53
CCDC40-214ENST00000575431 ZBTB47Q9UFB7 747 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-214ENST00000575431 MYH13Q9UKX3 1938 aa11.73□□□□□ -0.53
CCDC40-214ENST00000575431 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-214ENST00000575431 IFIT2P09913 472 aaKnown RBP11.72□□□□□ -0.53
CCDC40-214ENST00000575431 ARID4AP29374 1257 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-214ENST00000575431 HDLBPQ00341 1268 aaKnown RBP11.72□□□□□ -0.53
CCDC40-214ENST00000575431 CHAF1AQ13111 956 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-214ENST00000575431 EAPPQ56P03 285 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-214ENST00000575431 TTC39AQ5SRH9 613 aa11.72□□□□□ -0.53
CCDC40-214ENST00000575431 CHADLQ6NUI6 762 aa11.72□□□□□ -0.53
CCDC40-214ENST00000575431 KIAA0825Q8IV33 1275 aa11.72□□□□□ -0.53
CCDC40-214ENST00000575431 DBNDD2Q9BQY9 259 aa11.72□□□□□ -0.53
CCDC40-214ENST00000575431 MRIQ9BWK5 157 aa11.72□□□□□ -0.53
CCDC40-214ENST00000575431 IL1RAPL2Q9NP60 686 aa11.72□□□□□ -0.53
CCDC40-214ENST00000575431 DBNLQ9UJU6 430 aaKnown RBP11.72□□□□□ -0.53
CCDC40-214ENST00000575431 IQSEC3Q9UPP2 1182 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-214ENST00000575431 CLEC11AQ9Y240 323 aa11.72□□□□□ -0.53
CCDC40-214ENST00000575431 APBB1O00213 710 aa11.71□□□□□ -0.53
CCDC40-214ENST00000575431 KIF4BQ2VIQ3 1234 aa11.71□□□□□ -0.53
CCDC40-214ENST00000575431 SPTY2D1Q68D10 685 aaPredicted RBP11.71□□□□□ -0.53
CCDC40-214ENST00000575431 CERS5Q8N5B7 392 aa11.71□□□□□ -0.53
CCDC40-214ENST00000575431 SPATA5Q8NB90 893 aa11.71□□□□□ -0.53
CCDC40-214ENST00000575431 CCDC8Q9H0W5 538 aaPredicted RBP11.71□□□□□ -0.53
CCDC40-214ENST00000575431 MYOZ2Q9NPC6 264 aa11.71□□□□□ -0.53
CCDC40-214ENST00000575431 PGAP2Q9UHJ9 254 aa11.71□□□□□ -0.53
CCDC40-214ENST00000575431 ADAMTSL1Q8N6G6 1762 aa11.7□□□□□ -0.54
CCDC40-214ENST00000575431 RASGRF1Q13972 1273 aa11.7□□□□□ -0.54
CCDC40-214ENST00000575431 DLGAP5Q15398 846 aa11.7□□□□□ -0.54
CCDC40-214ENST00000575431 RBM26Q5T8P6 1007 aaKnown RBP11.7□□□□□ -0.54
CCDC40-214ENST00000575431 SAMD7Q7Z3H4 446 aa11.7□□□□□ -0.54
CCDC40-214ENST00000575431 MTMR14Q8NCE2 650 aa11.7□□□□□ -0.54
CCDC40-214ENST00000575431 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.7□□□□□ -0.54
CCDC40-214ENST00000575431 MXD3Q9BW11 206 aa11.7□□□□□ -0.54
CCDC40-214ENST00000575431 SERPINA10Q9UK55 444 aa11.7□□□□□ -0.54
CCDC40-214ENST00000575431 TTF2Q9UNY4 1162 aaKnown RBP11.7□□□□□ -0.54
CCDC40-214ENST00000575431 UTRNP46939 3433 aa11.7□□□□□ -0.54
CCDC40-214ENST00000575431 MYO1BO43795 1136 aa11.69□□□□□ -0.54
CCDC40-214ENST00000575431 LDHBP07195 334 aaKnown RBP11.69□□□□□ -0.54
CCDC40-214ENST00000575431 NEFLP07196 543 aa11.69□□□□□ -0.54
CCDC40-214ENST00000575431 TBC1D10BQ4KMP7 808 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-214ENST00000575431 TMED8Q6PL24 325 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-214ENST00000575431 SLF2Q8IX21 1173 aa11.69□□□□□ -0.54
CCDC40-214ENST00000575431 SMC5Q8IY18 1101 aa11.69□□□□□ -0.54
CCDC40-214ENST00000575431 GPATCH3Q96I76 525 aa11.69□□□□□ -0.54
CCDC40-214ENST00000575431 HMG20BQ9P0W2 317 aa11.69□□□□□ -0.54
CCDC40-214ENST00000575431 JAG2Q9Y219 1238 aa11.69□□□□□ -0.54
CCDC40-214ENST00000575431 PITPNM2Q9BZ72 1349 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 SHTN1A0MZ66 631 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 F8W031 263 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-214ENST00000575431 WNT10BO00744 389 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 MCAMP43121 646 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 HIRAP54198 1017 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-214ENST00000575431 C1QTNF8P60827 252 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 HHIPL2Q6UWX4 724 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 ERICH6Q7L0X2 663 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 CDC37L1Q7L3B6 337 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 TRPM4Q8TD43 1214 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 TEKT1Q969V4 418 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 DCPSQ96C86 337 aaKnown RBP11.68□□□□□ -0.54
CCDC40-214ENST00000575431 ABCF2Q9UG63 623 aa11.68□□□□□ -0.54
CCDC40-214ENST00000575431 LDHCP07864 332 aa11.67□□□□□ -0.54
CCDC40-214ENST00000575431 CRKP46108 304 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms