RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 ONECUT3O60422 494 aaPredicted RBP8.03□□□□□ -1.12
SMG6-217ENST00000575338 PRPF40AO75400 957 aaKnown RBP8.03□□□□□ -1.12
SMG6-217ENST00000575338 IDH1O75874 414 aaKnown RBP8.03□□□□□ -1.12
SMG6-217ENST00000575338 HCLS1P14317 486 aaPredicted RBP8.03□□□□□ -1.12
SMG6-217ENST00000575338 HSPA1LP34931 641 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 MCAMP43121 646 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 NT5C2P49902 561 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 ZNF445P59923 1031 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 KRT85P78386 507 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 SLC9C2Q5TAH2 1124 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 ATL3Q6DD88 541 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 CPLX2Q6PUV4 134 aaKnown RBP8.03□□□□□ -1.12
SMG6-217ENST00000575338 CCDC129Q6ZRS4 1044 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 GTF3C6Q969F1 213 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 SEC62Q99442 399 aaKnown RBP8.03□□□□□ -1.12
SMG6-217ENST00000575338 MTA3Q9BTC8 594 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 GZF1Q9H116 711 aaPredicted RBP8.03□□□□□ -1.12
SMG6-217ENST00000575338 CNNM2Q9H8M5 875 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 BSDC1Q9NW68 430 aaPredicted RBP8.03□□□□□ -1.12
SMG6-217ENST00000575338 TPCN1Q9ULQ1 816 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 ZDHHC9Q9Y397 364 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 PDS5AQ29RF7 1337 aaKnown RBP8.03□□□□□ -1.12
SMG6-217ENST00000575338 VPS37CA5D8V6 355 aaPredicted RBP8.02□□□□□ -1.13
SMG6-217ENST00000575338 H3BQV1 296 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 GNPATO15228 680 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 PFKFB2O60825 505 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 RFC4P35249 363 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 UBE2HP62256 183 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 CHRNDQ07001 517 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 PKP1Q13835 747 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 TOB2Q14106 344 aaPredicted RBP8.02□□□□□ -1.13
SMG6-217ENST00000575338 ALX1Q15699 326 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 SLC27A3Q5K4L6 730 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 TRAPPC3LQ5T215 181 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 IFFO2Q5TF58 517 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 NBPF5PQ86XG9 351 aaPredicted RBP8.02□□□□□ -1.13
SMG6-217ENST00000575338 VPS37DQ86XT2 251 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 SYNE4Q8N205 404 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 OSBP2Q969R2 916 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 TMEM87BQ96K49 555 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 BCL11BQ9C0K0 894 aaPredicted RBP8.02□□□□□ -1.13
SMG6-217ENST00000575338 SCAND2PQ9GZW5 306 aaPredicted RBP8.02□□□□□ -1.13
SMG6-217ENST00000575338 GRPEL1Q9HAV7 217 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 CFAP45Q9UL16 551 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 DENND2AQ9ULE3 1009 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 NDUFB9Q9Y6M9 179 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 TIAM2Q8IVF5 1701 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 ELP1O95163 1332 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 AFF2P51816 1311 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 PNPLA7Q6ZV29 1317 aa8.02□□□□□ -1.13
SMG6-217ENST00000575338 FAM177BA6PVY3 158 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 M0R2C6 588 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 CDKL5O76039 1030 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 FGAP02671 866 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 APPP05067 770 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 PCP11498 1178 aaKnown RBP8.01□□□□□ -1.13
SMG6-217ENST00000575338 CPA1P15085 419 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 PHKA1P46020 1223 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 EXOSC10Q01780 885 aaKnown RBP8.01□□□□□ -1.13
SMG6-217ENST00000575338 SART3Q15020 963 aaKnown RBP8.01□□□□□ -1.13
SMG6-217ENST00000575338 CAVIN1Q6NZI2 390 aaKnown RBP8.01□□□□□ -1.13
SMG6-217ENST00000575338 FAM196AQ6ZSG2 479 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 BRF1Q92994 677 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 KRT23Q9C075 422 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 RNF41Q9H4P4 317 aaPredicted RBP8.01□□□□□ -1.13
SMG6-217ENST00000575338 LRP2BPQ9P2M1 347 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 MTMR6Q9Y217 621 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 ZNF532Q9HCE3 1301 aa8.01□□□□□ -1.13
SMG6-217ENST00000575338 LAMB1P07942 1786 aa8□□□□□ -1.13
SMG6-217ENST00000575338 GOLGA6L4A6NEF3 574 aa8□□□□□ -1.13
SMG6-217ENST00000575338 PATL2C9JE40 543 aaKnown RBP8□□□□□ -1.13
SMG6-217ENST00000575338 PDE6AP16499 860 aa8□□□□□ -1.13
SMG6-217ENST00000575338 EVCP57679 992 aa8□□□□□ -1.13
SMG6-217ENST00000575338 RPS8P62241 208 aaKnown RBP8□□□□□ -1.13
SMG6-217ENST00000575338 SCARF1Q14162 830 aa8□□□□□ -1.13
SMG6-217ENST00000575338 ZSCAN23Q3MJ62 389 aa8□□□□□ -1.13
SMG6-217ENST00000575338 ERFEQ4G0M1 354 aa8□□□□□ -1.13
SMG6-217ENST00000575338 SPTY2D1Q68D10 685 aaPredicted RBP8□□□□□ -1.13
SMG6-217ENST00000575338 NAA16Q6N069 864 aaPredicted RBP8□□□□□ -1.13
SMG6-217ENST00000575338 CERS3Q8IU89 383 aa8□□□□□ -1.13
SMG6-217ENST00000575338 NAPBQ9H115 298 aa8□□□□□ -1.13
SMG6-217ENST00000575338 SEC31BQ9NQW1 1179 aa8□□□□□ -1.13
SMG6-217ENST00000575338 BRWD3Q6RI45 1802 aa8□□□□□ -1.13
SMG6-217ENST00000575338 ZNF804BA4D1E1 1349 aa8□□□□□ -1.13
SMG6-217ENST00000575338 MYH6P13533 1939 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 ERICH2A1L162 156 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 CPLX1O14810 134 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 LARGE1O95461 756 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 TAF1P21675 1872 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 ST5P78524 1137 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 CCDC173Q0VFZ6 552 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 RASGRF1Q13972 1273 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 CCDC183Q5T5S1 534 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 TBC1D9BQ66K14 1250 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 GIMAP6Q6P9H5 292 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 LRSAM1Q6UWE0 723 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 SYNE3Q6ZMZ3 975 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 TMC4Q7Z404 712 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 TMTC2Q8N394 836 aa7.99□□□□□ -1.13
SMG6-217ENST00000575338 MAGEB6Q8N7X4 407 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms