RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ANKRD2Q9GZV1 360 aa10.21□□□□□ -0.77
VPS53-214ENST00000572607 DBNDD1Q9H9R9 158 aa10.21□□□□□ -0.77
VPS53-214ENST00000572607 CACNA1FO60840 1977 aa10.21□□□□□ -0.78
VPS53-214ENST00000572607 KCNJ4P48050 445 aa10.2□□□□□ -0.78
VPS53-214ENST00000572607 GMPSP49915 693 aaPredicted RBP10.2□□□□□ -0.78
VPS53-214ENST00000572607 SCNN1DP51172 638 aa10.2□□□□□ -0.78
VPS53-214ENST00000572607 MAP1SQ66K74 1059 aaPredicted RBP10.2□□□□□ -0.78
VPS53-214ENST00000572607 USP50Q70EL3 339 aaPredicted RBP10.2□□□□□ -0.78
VPS53-214ENST00000572607 GPR101Q96P66 508 aaPredicted RBP10.2□□□□□ -0.78
VPS53-214ENST00000572607 API5Q9BZZ5 524 aaKnown RBP10.2□□□□□ -0.78
VPS53-214ENST00000572607 DUOX1Q9NRD9 1551 aa10.2□□□□□ -0.78
VPS53-214ENST00000572607 ADARB2Q9NS39 739 aaKnown RBP10.2□□□□□ -0.78
VPS53-214ENST00000572607 MINPP1Q9UNW1 487 aa10.2□□□□□ -0.78
VPS53-214ENST00000572607 CASP8AP2Q9UKL3 1982 aa10.19□□□□□ -0.78
VPS53-214ENST00000572607 WDR33Q9C0J8 1336 aaKnown RBP10.19□□□□□ -0.78
VPS53-214ENST00000572607 H7C1D1 291 aa10.19□□□□□ -0.78
VPS53-214ENST00000572607 PPP1R37O75864 691 aa10.19□□□□□ -0.78
VPS53-214ENST00000572607 NUDT7P0C024 238 aa10.19□□□□□ -0.78
VPS53-214ENST00000572607 CCT4P50991 539 aaKnown RBP10.19□□□□□ -0.78
VPS53-214ENST00000572607 LMBR1LQ6UX01 489 aa10.19□□□□□ -0.78
VPS53-214ENST00000572607 GPRC5DQ9NZD1 345 aa10.19□□□□□ -0.78
VPS53-214ENST00000572607 LEMD3Q9Y2U8 911 aa10.19□□□□□ -0.78
VPS53-214ENST00000572607 PCDHGA4Q9Y5G9 962 aa10.19□□□□□ -0.78
VPS53-214ENST00000572607 MED23Q9ULK4 1368 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 KIF16BQ96L93 1317 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 YDJCA8MPS7 323 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 RPS12P25398 132 aaKnown RBP10.18□□□□□ -0.78
VPS53-214ENST00000572607 EPS15P42566 896 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 RGS19P49795 217 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 FOXO4P98177 505 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 DEFB115Q30KQ5 88 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 CNTROBQ8N137 903 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 CNNM1Q9NRU3 951 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 NOB1Q9ULX3 412 aaKnown RBP10.18□□□□□ -0.78
VPS53-214ENST00000572607 COL4A1P02462 1669 aa10.18□□□□□ -0.78
VPS53-214ENST00000572607 TAF1P21675 1872 aa10.17□□□□□ -0.78
VPS53-214ENST00000572607 ZNF804BA4D1E1 1349 aa10.17□□□□□ -0.78
VPS53-214ENST00000572607 PSMD14O00487 310 aa10.17□□□□□ -0.78
VPS53-214ENST00000572607 IPO8O15397 1037 aaKnown RBP10.17□□□□□ -0.78
VPS53-214ENST00000572607 NBPF7P0C2Y1 421 aaPredicted RBP10.17□□□□□ -0.78
VPS53-214ENST00000572607 CHRNDQ07001 517 aa10.17□□□□□ -0.78
VPS53-214ENST00000572607 PODNQ7Z5L7 613 aa10.17□□□□□ -0.78
VPS53-214ENST00000572607 AIDAQ96BJ3 306 aa10.17□□□□□ -0.78
VPS53-214ENST00000572607 SUCLG2Q96I99 432 aa10.17□□□□□ -0.78
VPS53-214ENST00000572607 CNOT7Q9UIV1 285 aaKnown RBP10.17□□□□□ -0.78
VPS53-214ENST00000572607 HDAC5Q9UQL6 1122 aa10.17□□□□□ -0.78
VPS53-214ENST00000572607 UTYO14607 1347 aa10.16□□□□□ -0.78
VPS53-214ENST00000572607 PBX2P40425 430 aa10.16□□□□□ -0.78
VPS53-214ENST00000572607 RARSP54136 660 aaKnown RBP10.16□□□□□ -0.78
VPS53-214ENST00000572607 LSM11P83369 360 aaKnown RBP eCLIP10.16□□□□□ -0.78
VPS53-214ENST00000572607 EPHA10Q5JZY3 1008 aa10.16□□□□□ -0.78
VPS53-214ENST00000572607 CST9Q5W186 159 aa10.16□□□□□ -0.78
VPS53-214ENST00000572607 LDHAL6AQ6ZMR3 332 aa10.16□□□□□ -0.78
VPS53-214ENST00000572607 DPF2Q92785 391 aa10.16□□□□□ -0.78
VPS53-214ENST00000572607 FBXW7Q969H0 707 aa10.16□□□□□ -0.78
VPS53-214ENST00000572607 COA1Q9GZY4 146 aa10.16□□□□□ -0.78
VPS53-214ENST00000572607 LHX6Q9UPM6 363 aa10.16□□□□□ -0.78
VPS53-214ENST00000572607 MYH3P11055 1940 aa10.15□□□□□ -0.78
VPS53-214ENST00000572607 USP17L3A6NCW0 530 aa10.15□□□□□ -0.78
VPS53-214ENST00000572607 USP17L4A6NCW7 530 aa10.15□□□□□ -0.78
VPS53-214ENST00000572607 UBTFL1P0CB47 393 aaPredicted RBP10.15□□□□□ -0.78
VPS53-214ENST00000572607 BRPF1P55201 1214 aaPredicted RBP10.15□□□□□ -0.78
VPS53-214ENST00000572607 USP17L1Q7RTZ2 530 aa10.15□□□□□ -0.78
VPS53-214ENST00000572607 ARHGAP45Q92619 1136 aa10.15□□□□□ -0.78
VPS53-214ENST00000572607 ZNF594Q96JF6 807 aaPredicted RBP10.15□□□□□ -0.78
VPS53-214ENST00000572607 BICC1Q9H694 974 aaKnown RBP10.15□□□□□ -0.78
VPS53-214ENST00000572607 ZBED9Q6R2W3 1325 aa10.14□□□□□ -0.79
VPS53-214ENST00000572607 TRAF5O00463 557 aa10.14□□□□□ -0.79
VPS53-214ENST00000572607 PLIN1O60240 522 aa10.14□□□□□ -0.79
VPS53-214ENST00000572607 VIL1P09327 827 aaKnown RBP10.14□□□□□ -0.79
VPS53-214ENST00000572607 RABL6Q3YEC7 729 aaPredicted RBP10.14□□□□□ -0.79
VPS53-214ENST00000572607 CYP4F22Q6NT55 531 aa10.14□□□□□ -0.79
VPS53-214ENST00000572607 RSBN1LQ6PCB5 846 aaPredicted RBP10.14□□□□□ -0.79
VPS53-214ENST00000572607 ZNF804AQ7Z570 1209 aa10.14□□□□□ -0.79
VPS53-214ENST00000572607 AGBL3Q8NEM8 1001 aa10.14□□□□□ -0.79
VPS53-214ENST00000572607 ZC3H15Q8WU90 426 aaKnown RBP10.14□□□□□ -0.79
VPS53-214ENST00000572607 FRAT1Q92837 279 aaPredicted RBP10.14□□□□□ -0.79
VPS53-214ENST00000572607 CAPNS2Q96L46 248 aa10.14□□□□□ -0.79
VPS53-214ENST00000572607 USP44Q9H0E7 712 aa10.14□□□□□ -0.79
VPS53-214ENST00000572607 MROH5Q6ZUA9 1318 aa10.13□□□□□ -0.79
VPS53-214ENST00000572607 MYO3BQ8WXR4 1341 aa10.13□□□□□ -0.79
VPS53-214ENST00000572607 TAF5LO75529 589 aa10.13□□□□□ -0.79
VPS53-214ENST00000572607 MAP2K1Q02750 393 aaPredicted RBP10.13□□□□□ -0.79
VPS53-214ENST00000572607 TBC1D10BQ4KMP7 808 aaPredicted RBP10.13□□□□□ -0.79
VPS53-214ENST00000572607 RBM26Q5T8P6 1007 aaKnown RBP10.13□□□□□ -0.79
VPS53-214ENST00000572607 STRIP1Q5VSL9 837 aa10.13□□□□□ -0.79
VPS53-214ENST00000572607 OGFOD1Q8N543 542 aa10.13□□□□□ -0.79
VPS53-214ENST00000572607 HELBQ8NG08 1087 aaPredicted RBP10.13□□□□□ -0.79
VPS53-214ENST00000572607 TRPM4Q8TD43 1214 aa10.13□□□□□ -0.79
VPS53-214ENST00000572607 KAZALD1Q96I82 304 aa10.13□□□□□ -0.79
VPS53-214ENST00000572607 KCNQ5Q9NR82 932 aa10.13□□□□□ -0.79
VPS53-214ENST00000572607 TSKSQ9UJT2 592 aa10.13□□□□□ -0.79
VPS53-214ENST00000572607 ABT1Q9ULW3 272 aaKnown RBP10.13□□□□□ -0.79
VPS53-214ENST00000572607 POLR2AP24928 1970 aaKnown RBP10.13□□□□□ -0.79
VPS53-214ENST00000572607 AOC2O75106 756 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 USP17L8P0C7I0 530 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 KIF4BQ2VIQ3 1234 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 METTL24Q5JXM2 366 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 ZKSCAN2Q63HK3 967 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 POTEEQ6S8J3 1075 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms