RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 CHST3Q7LGC8 479 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 BPIFA3Q9BQP9 254 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 A0A0U1RQG5 324 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-207ENST00000572253 ZFYP08048 801 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-207ENST00000572253 TRHP20396 242 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-207ENST00000572253 CCDC158Q5M9N0 1113 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 LINC00301Q8NCQ3 95 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 KCND1Q9NSA2 647 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 CEP126Q9P2H0 1117 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 KDM6AO15550 1401 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-207ENST00000572253 GOLGA8BA8MQT2 603 aa12.49□□□□□ -0.41
CCDC40-207ENST00000572253 EYA2O00167 538 aa12.49□□□□□ -0.41
CCDC40-207ENST00000572253 NAA30Q147X3 362 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-207ENST00000572253 BCL11BQ9C0K0 894 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-207ENST00000572253 A0A087WWV3 80 aa12.49□□□□□ -0.41
CCDC40-207ENST00000572253 POLR3DP05423 398 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-207ENST00000572253 NDUFA8P51970 172 aa12.49□□□□□ -0.41
CCDC40-207ENST00000572253 POLR3EQ9NVU0 708 aa12.49□□□□□ -0.41
CCDC40-207ENST00000572253 IFNKQ9P0W0 207 aa12.49□□□□□ -0.41
CCDC40-207ENST00000572253 SIPA1L3O60292 1781 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-207ENST00000572253 H7C1W4 665 aa12.49□□□□□ -0.41
CCDC40-207ENST00000572253 NLRP12P59046 1061 aa12.49□□□□□ -0.41
CCDC40-207ENST00000572253 TTC39AQ5SRH9 613 aa12.49□□□□□ -0.41
CCDC40-207ENST00000572253 ERCC4Q92889 916 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-207ENST00000572253 MORC2Q9Y6X9 1032 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-207ENST00000572253 KLF18A0A0U1RQI7 1052 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 FKBP4Q02790 459 aaKnown RBP eCLIP12.48□□□□□ -0.41
CCDC40-207ENST00000572253 HOMER1Q86YM7 354 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 JMYQ8N9B5 988 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 PSDA5PKW4 1024 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-207ENST00000572253 CBFA2T2O43439 604 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 PRC1O43663 620 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 CASP7P55210 303 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 GNL2Q13823 731 aaKnown RBP12.48□□□□□ -0.41
CCDC40-207ENST00000572253 SLFNL1Q499Z3 407 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 ATG9AQ7Z3C6 839 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 XPO4Q9C0E2 1151 aaKnown RBP12.48□□□□□ -0.41
CCDC40-207ENST00000572253 A0A1B0GUL7 405 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 DPCR1Q3MIW9 517 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 MYSM1Q5VVJ2 828 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 TAF3Q5VWG9 929 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 CPLX2Q6PUV4 134 aaKnown RBP12.48□□□□□ -0.41
CCDC40-207ENST00000572253 LRP10Q7Z4F1 713 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 FBXL16Q8N461 479 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 FBXO18Q8NFZ0 1043 aa12.48□□□□□ -0.41
CCDC40-207ENST00000572253 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.48□□□□□ -0.41
CCDC40-207ENST00000572253 V9GYY5 206 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-207ENST00000572253 FOXO4P98177 505 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 NCOA7Q8NI08 942 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.47□□□□□ -0.41
CCDC40-207ENST00000572253 AKAP2Q9Y2D5 859 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 CLIC4Q9Y696 253 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 BIN1O00499 593 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 KCNJ6P48051 423 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 TRDNQ13061 729 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 ELF2Q15723 593 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 TTLL5Q6EMB2 1281 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 ILDR1Q86SU0 546 aaPredicted RBP12.47□□□□□ -0.41
CCDC40-207ENST00000572253 CIAO1O76071 339 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 ZNF202O95125 648 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 FDPSP14324 419 aaKnown RBP12.47□□□□□ -0.41
CCDC40-207ENST00000572253 EVCP57679 992 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 ANO1Q5XXA6 986 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 OTUD7BQ6GQQ9 843 aa12.47□□□□□ -0.41
CCDC40-207ENST00000572253 CMA1P23946 247 aa12.46□□□□□ -0.41
CCDC40-207ENST00000572253 HAND2P61296 217 aa12.46□□□□□ -0.41
CCDC40-207ENST00000572253 ADAMTS7Q9UKP4 1686 aa12.46□□□□□ -0.41
CCDC40-207ENST00000572253 M0R2C6 588 aa12.46□□□□□ -0.41
CCDC40-207ENST00000572253 CAMTA1Q9Y6Y1 1673 aa12.46□□□□□ -0.41
CCDC40-207ENST00000572253 CDKL5O76039 1030 aa12.46□□□□□ -0.42
CCDC40-207ENST00000572253 CCDC57Q2TAC2 916 aa12.46□□□□□ -0.42
CCDC40-207ENST00000572253 TAF7LQ5H9L4 462 aa12.46□□□□□ -0.42
CCDC40-207ENST00000572253 ATG3Q9NT62 314 aa12.46□□□□□ -0.42
CCDC40-207ENST00000572253 KMT5BQ4FZB7 885 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 OLFM4Q6UX06 510 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 SYT10Q6XYQ8 523 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 CCDC191Q8NCU4 936 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 PPP1R13BQ96KQ4 1090 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 C5P01031 1676 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 ZNF213O14771 459 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 IGSF3O75054 1194 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 OSBP2Q969R2 916 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 ARGLU1Q9NWB6 273 aaPredicted RBP12.45□□□□□ -0.42
CCDC40-207ENST00000572253 AFDNP55196 1824 aaKnown RBP12.45□□□□□ -0.42
CCDC40-207ENST00000572253 IKBKBO14920 756 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 SERPINC1P01008 464 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 SYKP43405 635 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 FANCCQ00597 558 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 LRRC24Q50LG9 513 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 NBPF11Q86T75 865 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 A0A0G2JLW4 131 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 PFKFB1P16118 471 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 BMS1Q14692 1282 aaKnown RBP12.45□□□□□ -0.42
CCDC40-207ENST00000572253 TIGD1Q96MW7 591 aa12.45□□□□□ -0.42
CCDC40-207ENST00000572253 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.45□□□□□ -0.42
CCDC40-207ENST00000572253 NPHP1O15259 732 aa12.44□□□□□ -0.42
CCDC40-207ENST00000572253 LMOD1P29536 600 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-207ENST00000572253 FBXO38Q6PIJ6 1188 aa12.44□□□□□ -0.42
CCDC40-207ENST00000572253 PROSER2Q86WR7 435 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-207ENST00000572253 APPBP2Q92624 585 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms