RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 DOK7Q18PE1 504 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 TAF7LQ5H9L4 462 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 METTL24Q5JXM2 366 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 DPP8Q6V1X1 898 aaPredicted RBP7.92□□□□□ -1.14
VPS53-209ENST00000570771 ARHGAP27Q6ZUM4 889 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 MPHOSPH8Q99549 860 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 DBNDD2Q9BQY9 259 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 DBNDD1Q9H9R9 158 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 DBNLQ9UJU6 430 aaKnown RBP7.92□□□□□ -1.14
VPS53-209ENST00000570771 FBXO3Q9UK99 471 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 IQSEC3Q9UPP2 1182 aaPredicted RBP7.92□□□□□ -1.14
VPS53-209ENST00000570771 PDZRN3Q9UPQ7 1066 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 XDHP47989 1333 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 AOX1Q06278 1338 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 LTBP3Q9NS15 1303 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 PDE8BO95263 885 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 CHGBP05060 677 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 IL15P40933 162 aaPredicted RBP7.91□□□□□ -1.14
VPS53-209ENST00000570771 BCAMP50895 628 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 KIAA2012Q0VF49 1180 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 TNNI3KQ59H18 835 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 C9orf131Q5VYM1 1079 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 MPNDQ8N594 471 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 RHPN1Q8TCX5 695 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 KIF1BPQ96EK5 621 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 FAM84BQ96KN1 310 aaPredicted RBP7.91□□□□□ -1.14
VPS53-209ENST00000570771 PSMD1Q99460 953 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 LRRCC1Q9C099 1032 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 CCDC8Q9H0W5 538 aaPredicted RBP7.91□□□□□ -1.14
VPS53-209ENST00000570771 BCL11AQ9H165 835 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 TAOK3Q9H2K8 898 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 ANKIB1Q9P2G1 1089 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 GGA1Q9UJY5 639 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 FPGT-TNNI3KV9GXZ4 949 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 ZNF804BA4D1E1 1349 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 MED23Q9ULK4 1368 aa7.91□□□□□ -1.14
VPS53-209ENST00000570771 ADAMTSL1Q8N6G6 1762 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 MROH5Q6ZUA9 1318 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 A0A1B0GUL7 405 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 C6orf229H3BNL8 230 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 IARSP41252 1262 aaKnown RBP7.9□□□□□ -1.14
VPS53-209ENST00000570771 NUCB1Q02818 461 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 ATP2B3Q16720 1220 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 ANKRD45Q5TZF3 282 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 CHD1LQ86WJ1 897 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 CERS5Q8N5B7 392 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 EDC3Q96F86 508 aaKnown RBP7.9□□□□□ -1.14
VPS53-209ENST00000570771 RNF181Q9P0P0 153 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 PCDHAC2Q9Y5I4 1007 aa7.9□□□□□ -1.14
VPS53-209ENST00000570771 PPIP5K2O43314 1243 aa7.89□□□□□ -1.15
VPS53-209ENST00000570771 ECE2O60344 883 aa7.89□□□□□ -1.15
VPS53-209ENST00000570771 EGFRP00533 1210 aa7.89□□□□□ -1.15
VPS53-209ENST00000570771 PUM3Q15397 648 aaKnown RBP7.89□□□□□ -1.15
VPS53-209ENST00000570771 FBXO33Q7Z6M2 555 aa7.89□□□□□ -1.15
VPS53-209ENST00000570771 ZNF384Q8TF68 577 aa7.89□□□□□ -1.15
VPS53-209ENST00000570771 XAGE2Q96GT9 111 aa7.89□□□□□ -1.15
VPS53-209ENST00000570771 CHD4Q14839 1912 aa7.89□□□□□ -1.15
VPS53-209ENST00000570771 SBF1O95248 1867 aa7.89□□□□□ -1.15
VPS53-209ENST00000570771 POTECB2RU33 542 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 RAD17O75943 681 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 ATP2B4P23634 1241 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 MCAMP43121 646 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 RASGRF1Q13972 1273 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 WASHC4Q2M389 1173 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 SLFNL1Q499Z3 407 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 CCDC102BQ68D86 513 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 C15orf52Q6ZUT6 534 aaKnown RBP7.88□□□□□ -1.15
VPS53-209ENST00000570771 TMC4Q7Z404 712 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 AACSQ86V21 672 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 RTKN2Q8IZC4 609 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 CLASRPQ8N2M8 674 aaKnown RBP7.88□□□□□ -1.15
VPS53-209ENST00000570771 LNPKQ9C0E8 428 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 AKAP2Q9Y2D5 859 aa7.88□□□□□ -1.15
VPS53-209ENST00000570771 FZD9O00144 591 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 PSMD14O00487 310 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 LMNB1P20700 586 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 CXCL9Q07325 125 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 UBE4AQ14139 1066 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 CC2D2BQ6DHV5 1058 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 LARGE2Q8N3Y3 721 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 TDRD7Q8NHU6 1098 aaKnown RBP7.87□□□□□ -1.15
VPS53-209ENST00000570771 PI4K2BQ8TCG2 481 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 LPIN2Q92539 896 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 GPATCH3Q96I76 525 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 ANKRD2Q9GZV1 360 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 ANTXR1Q9H6X2 564 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 CD209Q9NNX6 404 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 SNRKQ9NRH2 765 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 CEP126Q9P2H0 1117 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 LEMD3Q9Y2U8 911 aa7.87□□□□□ -1.15
VPS53-209ENST00000570771 ASTN2O75129 1339 aaPredicted RBP7.86□□□□□ -1.15
VPS53-209ENST00000570771 DDNO94850 711 aaPredicted RBP7.86□□□□□ -1.15
VPS53-209ENST00000570771 IFIT2P09913 472 aaKnown RBP7.86□□□□□ -1.15
VPS53-209ENST00000570771 IL1R1P14778 569 aa7.86□□□□□ -1.15
VPS53-209ENST00000570771 SCNN1DP51172 638 aa7.86□□□□□ -1.15
VPS53-209ENST00000570771 DACT2Q5SW24 774 aa7.86□□□□□ -1.15
VPS53-209ENST00000570771 TBC1D9Q6ZT07 1266 aa7.86□□□□□ -1.15
VPS53-209ENST00000570771 PDCD7Q8N8D1 485 aaKnown RBP7.86□□□□□ -1.15
VPS53-209ENST00000570771 NEUROD6Q96NK8 337 aa7.86□□□□□ -1.15
VPS53-209ENST00000570771 GMLQ99445 158 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms