RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 IRS4O14654 1257 aaPredicted RBP17.5■□□□□ 0.39
CIITA-204ENST00000570546 CALM1P0DP23 149 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 CALM2P0DP24 149 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 CALM3P0DP25 149 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 A0A1B0GUL7 405 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 CTAGE9A4FU28 777 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 EYA2O00167 538 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 IL2RBP14784 551 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 C17orf53Q8N3J3 647 aaPredicted RBP17.5■□□□□ 0.39
CIITA-204ENST00000570546 KRI1Q8N9T8 703 aaKnown RBP17.5■□□□□ 0.39
CIITA-204ENST00000570546 UTP14AQ9BVJ6 771 aaKnown RBP17.5■□□□□ 0.39
CIITA-204ENST00000570546 AKR1B10O60218 316 aa17.49■□□□□ 0.39
CIITA-204ENST00000570546 MYL5Q02045 173 aa17.49■□□□□ 0.39
CIITA-204ENST00000570546 HLTFQ14527 1009 aaKnown RBP eCLIP17.49■□□□□ 0.39
CIITA-204ENST00000570546 WWC2Q6AWC2 1192 aa17.49■□□□□ 0.39
CIITA-204ENST00000570546 HEATR3Q7Z4Q2 680 aa17.49■□□□□ 0.39
CIITA-204ENST00000570546 NCOA5Q9HCD5 579 aaKnown RBP17.49■□□□□ 0.39
CIITA-204ENST00000570546 GOPCQ9HD26 462 aa17.49■□□□□ 0.39
CIITA-204ENST00000570546 DTNBO60941 627 aa17.49■□□□□ 0.39
CIITA-204ENST00000570546 EIF4A1P60842 406 aaKnown RBP17.49■□□□□ 0.39
CIITA-204ENST00000570546 HELBQ8NG08 1087 aaPredicted RBP17.49■□□□□ 0.39
CIITA-204ENST00000570546 RNF216Q9NWF9 866 aaPredicted RBP17.49■□□□□ 0.39
CIITA-204ENST00000570546 BCCIPQ9P287 314 aaKnown RBP eCLIP17.49■□□□□ 0.39
CIITA-204ENST00000570546 PSMA7O14818 248 aa17.49■□□□□ 0.39
CIITA-204ENST00000570546 MAPK8IP2Q13387 824 aaPredicted RBP17.49■□□□□ 0.39
CIITA-204ENST00000570546 TCERG1LQ5VWI1 586 aa17.49■□□□□ 0.39
CIITA-204ENST00000570546 MIGA1Q8NAN2 632 aa17.49■□□□□ 0.39
CIITA-204ENST00000570546 TMCO5BA8MYB1 307 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 STX17P56962 302 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 PKP1Q13835 747 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 CCDC113Q9H0I3 377 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 FAM135BQ49AJ0 1406 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 KARSQ15046 597 aaKnown RBP17.48■□□□□ 0.39
CIITA-204ENST00000570546 DZIP3Q86Y13 1208 aaKnown RBP17.48■□□□□ 0.39
CIITA-204ENST00000570546 PALD1Q9ULE6 856 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 POTEJP0CG39 1038 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 TM6SF1Q9BZW5 370 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 FAM107BQ9H098 131 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 GNAQP50148 359 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 CLASP1Q7Z460 1538 aa17.48■□□□□ 0.39
CIITA-204ENST00000570546 ATP6V1AP38606 617 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 ANO1Q5XXA6 986 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 SSH3Q8TE77 659 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 DYDC1Q8WWB3 177 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 GTPBP4Q9BZE4 634 aaKnown RBP17.47■□□□□ 0.39
CIITA-204ENST00000570546 UGGT1Q9NYU2 1555 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 C6orf229H3BNL8 230 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 GBP2P32456 591 aaPredicted RBP17.47■□□□□ 0.39
CIITA-204ENST00000570546 SIRT1Q96EB6 747 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 USP44Q9H0E7 712 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 RIOK3O14730 519 aaKnown RBP17.47■□□□□ 0.39
CIITA-204ENST00000570546 MYO1BO43795 1136 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 NOP2P46087 812 aaKnown RBP17.47■□□□□ 0.39
CIITA-204ENST00000570546 MICALCLQ6ZW33 695 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 MYRIPQ8NFW9 859 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 OGFRQ9NZT2 677 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 PCDH11XQ9BZA7 1347 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 PCDH11YQ9BZA8 1340 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 MCM6Q14566 821 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 PPP1R9BQ96SB3 815 aa17.47■□□□□ 0.39
CIITA-204ENST00000570546 ANKRD62A6NC57 917 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 TERF1P54274 439 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 ME3Q16798 604 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 NBPF6Q5VWK0 638 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 NBPF5PQ86XG9 351 aaPredicted RBP17.46■□□□□ 0.39
CIITA-204ENST00000570546 NBPF4Q96M43 638 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 TIGD1Q96MW7 591 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 NIP7Q9Y221 180 aaKnown RBP eCLIP17.46■□□□□ 0.39
CIITA-204ENST00000570546 IBTKQ9P2D0 1353 aaPredicted RBP17.46■□□□□ 0.39
CIITA-204ENST00000570546 PLEKHG3A1L390 1219 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 PREX2Q70Z35 1606 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 GPT2Q8TD30 523 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 LZTFL1Q9NQ48 299 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 CFAP65Q6ZU64 1925 aaKnown RBP17.46■□□□□ 0.39
CIITA-204ENST00000570546 ASIC1P78348 528 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 KBTBD3Q8NAB2 608 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 CETN2P41208 172 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 DHX37Q8IY37 1157 aaKnown RBP17.46■□□□□ 0.39
CIITA-204ENST00000570546 FEZ1Q99689 392 aa17.46■□□□□ 0.39
CIITA-204ENST00000570546 GCKRQ14397 625 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 RNF187Q5TA31 235 aaPredicted RBP17.45■□□□□ 0.38
CIITA-204ENST00000570546 MAATS1Q7Z4T9 603 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 NDUFB9Q9Y6M9 179 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 JAK2O60674 1132 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 MBD4O95243 580 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 CALML3P27482 149 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 BAG1Q99933 345 aaPredicted RBP17.45■□□□□ 0.38
CIITA-204ENST00000570546 ZKSCAN3Q9BRR0 538 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 SLC52A2Q9HAB3 445 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 B4E1Z4 1266 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 HSF2BPO75031 334 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 ERO1AQ96HE7 468 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 EHMT1Q9H9B1 1298 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 MCM7P33993 719 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 UBXN1Q04323 297 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 GAS2L3Q86XJ1 694 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 XAGE2Q96GT9 111 aa17.45■□□□□ 0.38
CIITA-204ENST00000570546 NAPAP54920 295 aa17.44■□□□□ 0.38
CIITA-204ENST00000570546 KRT83P78385 493 aa17.44■□□□□ 0.38
CIITA-204ENST00000570546 ZNF569Q5MCW4 686 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms