RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CTSWP56202 376 aa14.29□□□□□ -0.12
VPS53-207ENST00000570510 CCL15Q16663 113 aa14.29□□□□□ -0.12
VPS53-207ENST00000570510 NBPF12Q5TAG4 269 aaPredicted RBP14.29□□□□□ -0.12
VPS53-207ENST00000570510 DUSP27Q5VZP5 1158 aa14.29□□□□□ -0.12
VPS53-207ENST00000570510 TESPA1A2RU30 521 aaPredicted RBP14.28□□□□□ -0.12
VPS53-207ENST00000570510 ZNF804BA4D1E1 1349 aa14.28□□□□□ -0.12
VPS53-207ENST00000570510 USP2O75604 605 aaPredicted RBP14.28□□□□□ -0.12
VPS53-207ENST00000570510 GJA5P36382 358 aa14.28□□□□□ -0.12
VPS53-207ENST00000570510 ZBED3Q96IU2 234 aaPredicted RBP14.28□□□□□ -0.12
VPS53-207ENST00000570510 MPHOSPH8Q99549 860 aa14.28□□□□□ -0.12
VPS53-207ENST00000570510 ANKRD2Q9GZV1 360 aa14.28□□□□□ -0.12
VPS53-207ENST00000570510 BIN2Q9UBW5 565 aaPredicted RBP14.28□□□□□ -0.12
VPS53-207ENST00000570510 GNRH1P01148 92 aa14.27□□□□□ -0.13
VPS53-207ENST00000570510 ZEB1P37275 1124 aaPredicted RBP14.27□□□□□ -0.13
VPS53-207ENST00000570510 CAP1Q01518 475 aa14.27□□□□□ -0.13
VPS53-207ENST00000570510 TNFAIP1Q13829 316 aa14.27□□□□□ -0.13
VPS53-207ENST00000570510 RASA3Q14644 834 aa14.27□□□□□ -0.13
VPS53-207ENST00000570510 CFAP100Q494V2 611 aa14.27□□□□□ -0.13
VPS53-207ENST00000570510 TXNRD3Q86VQ6 643 aa14.27□□□□□ -0.13
VPS53-207ENST00000570510 CSADQ9Y600 493 aa14.27□□□□□ -0.13
VPS53-207ENST00000570510 ECM2O94769 699 aaPredicted RBP14.26□□□□□ -0.13
VPS53-207ENST00000570510 MNX1P50219 401 aaPredicted RBP14.26□□□□□ -0.13
VPS53-207ENST00000570510 PRMT2P55345 433 aa14.26□□□□□ -0.13
VPS53-207ENST00000570510 MTMR14Q8NCE2 650 aa14.26□□□□□ -0.13
VPS53-207ENST00000570510 TTLL11Q8NHH1 800 aa14.26□□□□□ -0.13
VPS53-207ENST00000570510 GREM2Q9H772 168 aa14.26□□□□□ -0.13
VPS53-207ENST00000570510 PHAXQ9H814 394 aaKnown RBP14.26□□□□□ -0.13
VPS53-207ENST00000570510 SPDYE2BA6NHP3 402 aa14.25□□□□□ -0.13
VPS53-207ENST00000570510 SPDYE6P0CI01 402 aa14.25□□□□□ -0.13
VPS53-207ENST00000570510 HOXD10P28358 340 aa14.25□□□□□ -0.13
VPS53-207ENST00000570510 NEXNQ0ZGT2 675 aa14.25□□□□□ -0.13
VPS53-207ENST00000570510 RAET1EQ8TD07 263 aa14.25□□□□□ -0.13
VPS53-207ENST00000570510 BRI3BPQ8WY22 251 aa14.25□□□□□ -0.13
VPS53-207ENST00000570510 MS4A4AQ96JQ5 239 aa14.25□□□□□ -0.13
VPS53-207ENST00000570510 TLR2O60603 784 aa14.24□□□□□ -0.13
VPS53-207ENST00000570510 LACTBP83111 547 aaPredicted RBP14.24□□□□□ -0.13
VPS53-207ENST00000570510 PRMT6Q96LA8 375 aaPredicted RBP14.24□□□□□ -0.13
VPS53-207ENST00000570510 METTL22Q9BUU2 404 aaPredicted RBP14.24□□□□□ -0.13
VPS53-207ENST00000570510 CHMP4AQ9BY43 222 aa14.24□□□□□ -0.13
VPS53-207ENST00000570510 ARHGAP39Q9C0H5 1083 aa14.24□□□□□ -0.13
VPS53-207ENST00000570510 CD209Q9NNX6 404 aa14.24□□□□□ -0.13
VPS53-207ENST00000570510 SSC5DA1L4H1 1573 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 A0A1W2PPC1 479 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 ELL2O00472 640 aaPredicted RBP14.23□□□□□ -0.13
VPS53-207ENST00000570510 EVI5O60447 810 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 CETPP11597 493 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 KLRK1P26718 216 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 MAP3K9P80192 1104 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 MTFR1Q15390 333 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 ZNF804AQ7Z570 1209 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 CCDC146Q8IYE0 955 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 FAM43AQ8N2R8 423 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 RNF208Q9H0X6 261 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 PCDHAC2Q9Y5I4 1007 aa14.23□□□□□ -0.13
VPS53-207ENST00000570510 A0A0C4DFX4 3053 aa14.22□□□□□ -0.13
VPS53-207ENST00000570510 FMNL1O95466 1100 aaPredicted RBP14.22□□□□□ -0.13
VPS53-207ENST00000570510 GRK4P32298 578 aa14.22□□□□□ -0.13
VPS53-207ENST00000570510 TNNI2P48788 182 aa14.22□□□□□ -0.13
VPS53-207ENST00000570510 UBXN2AP68543 259 aa14.22□□□□□ -0.13
VPS53-207ENST00000570510 HELBQ8NG08 1087 aaPredicted RBP14.22□□□□□ -0.13
VPS53-207ENST00000570510 TRIM47Q96LD4 638 aa14.22□□□□□ -0.13
VPS53-207ENST00000570510 MAP3K2Q9Y2U5 619 aa14.22□□□□□ -0.13
VPS53-207ENST00000570510 ITGA6P23229 1130 aa14.21□□□□□ -0.13
VPS53-207ENST00000570510 GJA8P48165 433 aa14.21□□□□□ -0.13
VPS53-207ENST00000570510 VGLL4Q14135 290 aa14.21□□□□□ -0.13
VPS53-207ENST00000570510 CERS5Q8N5B7 392 aa14.21□□□□□ -0.13
VPS53-207ENST00000570510 CNKSR2Q8WXI2 1034 aa14.21□□□□□ -0.13
VPS53-207ENST00000570510 ZBTB7BO15156 539 aaPredicted RBP14.2□□□□□ -0.14
VPS53-207ENST00000570510 FARP2O94887 1054 aaPredicted RBP14.2□□□□□ -0.14
VPS53-207ENST00000570510 GJB1P08034 283 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 CCL5P13501 91 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 PSMC4P43686 418 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 CHRNDQ07001 517 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 SNAPC2Q13487 334 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.2□□□□□ -0.14
VPS53-207ENST00000570510 SHISA4Q96DD7 197 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 LRCH3Q96II8 777 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 SRRDQ9UH36 339 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 JAG2Q9Y219 1238 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 RIPOR2Q9Y4F9 1068 aa14.2□□□□□ -0.14
VPS53-207ENST00000570510 TCP10L2B9ZVM9 353 aa14.19□□□□□ -0.14
VPS53-207ENST00000570510 CCDC30Q5VVM6 783 aa14.19□□□□□ -0.14
VPS53-207ENST00000570510 UBE3BQ7Z3V4 1068 aa14.19□□□□□ -0.14
VPS53-207ENST00000570510 TDRD3Q9H7E2 651 aaKnown RBP14.19□□□□□ -0.14
VPS53-207ENST00000570510 ZCCHC17Q9NP64 241 aaKnown RBP14.19□□□□□ -0.14
VPS53-207ENST00000570510 MBIPQ9NS73 344 aa14.19□□□□□ -0.14
VPS53-207ENST00000570510 ZNF70Q9UC06 446 aaPredicted RBP14.19□□□□□ -0.14
VPS53-207ENST00000570510 RANBP2P49792 3224 aaKnown RBP14.19□□□□□ -0.14
VPS53-207ENST00000570510 BTBD19C9JJ37 291 aa14.18□□□□□ -0.14
VPS53-207ENST00000570510 FKBP1AP62942 108 aaKnown RBP14.18□□□□□ -0.14
VPS53-207ENST00000570510 WDR43Q15061 677 aaKnown RBP eCLIP14.18□□□□□ -0.14
VPS53-207ENST00000570510 ERO1BQ86YB8 467 aa14.18□□□□□ -0.14
VPS53-207ENST00000570510 DEFB123Q8N688 67 aa14.18□□□□□ -0.14
VPS53-207ENST00000570510 RUNDC1Q96C34 613 aa14.18□□□□□ -0.14
VPS53-207ENST00000570510 PRO3102Q9H379 93 aa14.18□□□□□ -0.14
VPS53-207ENST00000570510 STAP2Q9UGK3 403 aa14.18□□□□□ -0.14
VPS53-207ENST00000570510 CPA4Q9UI42 421 aa14.18□□□□□ -0.14
VPS53-207ENST00000570510 TRIM35Q9UPQ4 493 aa14.18□□□□□ -0.14
VPS53-207ENST00000570510 MYPNQ86TC9 1320 aa14.17□□□□□ -0.14
VPS53-207ENST00000570510 PI4KAP2A4QPH2 592 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms