RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 NBPF12Q5TAG4 269 aaPredicted RBP23.51■■□□□ 1.35
CLK3-227ENST00000570296 LRCH3Q96II8 777 aa23.51■■□□□ 1.35
CLK3-227ENST00000570296 BSDC1Q9NW68 430 aaPredicted RBP23.51■■□□□ 1.35
CLK3-227ENST00000570296 MYO1BO43795 1136 aa23.5■■□□□ 1.35
CLK3-227ENST00000570296 WDHD1O75717 1129 aaPredicted RBP23.5■■□□□ 1.35
CLK3-227ENST00000570296 LACTBP83111 547 aaPredicted RBP23.5■■□□□ 1.35
CLK3-227ENST00000570296 TRIM26Q12899 539 aaPredicted RBP23.5■■□□□ 1.35
CLK3-227ENST00000570296 KRT24Q2M2I5 525 aa23.5■■□□□ 1.35
CLK3-227ENST00000570296 GTF2A2P52657 109 aa23.49■■□□□ 1.35
CLK3-227ENST00000570296 RIPK4P57078 832 aa23.49■■□□□ 1.35
CLK3-227ENST00000570296 LMOD3Q0VAK6 560 aa23.49■■□□□ 1.35
CLK3-227ENST00000570296 MTFR1Q15390 333 aa23.49■■□□□ 1.35
CLK3-227ENST00000570296 GPR153Q6NV75 609 aa23.49■■□□□ 1.35
CLK3-227ENST00000570296 TXNRD3Q86VQ6 643 aa23.49■■□□□ 1.35
CLK3-227ENST00000570296 CCDC191Q8NCU4 936 aa23.49■■□□□ 1.35
CLK3-227ENST00000570296 ELP3Q9H9T3 547 aa23.49■■□□□ 1.35
CLK3-227ENST00000570296 CCL15-CCL14A0A0B4J2E2 113 aa23.48■■□□□ 1.35
CLK3-227ENST00000570296 GJA8P48165 433 aa23.48■■□□□ 1.35
CLK3-227ENST00000570296 GTF2IP78347 998 aa23.48■■□□□ 1.35
CLK3-227ENST00000570296 CCL15Q16663 113 aa23.48■■□□□ 1.35
CLK3-227ENST00000570296 PCGF6Q9BYE7 350 aa23.48■■□□□ 1.35
CLK3-227ENST00000570296 ARHGAP39Q9C0H5 1083 aa23.48■■□□□ 1.35
CLK3-227ENST00000570296 LEMD3Q9Y2U8 911 aa23.48■■□□□ 1.35
CLK3-227ENST00000570296 MYH3P11055 1940 aa23.48■■□□□ 1.35
CLK3-227ENST00000570296 TLR2O60603 784 aa23.47■■□□□ 1.35
CLK3-227ENST00000570296 GJB1P08034 283 aa23.47■■□□□ 1.35
CLK3-227ENST00000570296 RIC3Q7Z5B4 369 aa23.47■■□□□ 1.35
CLK3-227ENST00000570296 CHL1O00533 1208 aa23.46■■□□□ 1.35
CLK3-227ENST00000570296 GOLGA2Q08379 1002 aa23.46■■□□□ 1.35
CLK3-227ENST00000570296 FAM43AQ8N2R8 423 aa23.46■■□□□ 1.35
CLK3-227ENST00000570296 CLRN2A0PK11 232 aa23.45■■□□□ 1.34
CLK3-227ENST00000570296 SPDYE2BA6NHP3 402 aa23.45■■□□□ 1.34
CLK3-227ENST00000570296 SPDYE6P0CI01 402 aa23.45■■□□□ 1.34
CLK3-227ENST00000570296 ZCCHC17Q9NP64 241 aaKnown RBP23.45■■□□□ 1.34
CLK3-227ENST00000570296 CWC25Q9NXE8 425 aaPredicted RBP23.45■■□□□ 1.34
CLK3-227ENST00000570296 CTSWP56202 376 aa23.44■■□□□ 1.34
CLK3-227ENST00000570296 VEZTQ9HBM0 779 aa23.44■■□□□ 1.34
CLK3-227ENST00000570296 STXBP5LQ9Y2K9 1186 aa23.44■■□□□ 1.34
CLK3-227ENST00000570296 RASA3Q14644 834 aa23.43■■□□□ 1.34
CLK3-227ENST00000570296 CFAP100Q494V2 611 aa23.43■■□□□ 1.34
CLK3-227ENST00000570296 MYD88Q99836 296 aa23.43■■□□□ 1.34
CLK3-227ENST00000570296 COL25A1Q9BXS0 654 aaPredicted RBP23.43■■□□□ 1.34
CLK3-227ENST00000570296 FARP2O94887 1054 aaPredicted RBP23.42■■□□□ 1.34
CLK3-227ENST00000570296 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.42■■□□□ 1.34
CLK3-227ENST00000570296 CERS5Q8N5B7 392 aa23.42■■□□□ 1.34
CLK3-227ENST00000570296 PCDHAC2Q9Y5I4 1007 aa23.42■■□□□ 1.34
CLK3-227ENST00000570296 CCL5P13501 91 aa23.41■■□□□ 1.34
CLK3-227ENST00000570296 KLRK1P26718 216 aa23.41■■□□□ 1.34
CLK3-227ENST00000570296 GRK4P32298 578 aa23.41■■□□□ 1.34
CLK3-227ENST00000570296 DEFB123Q8N688 67 aa23.41■■□□□ 1.34
CLK3-227ENST00000570296 CNKSR2Q8WXI2 1034 aa23.41■■□□□ 1.34
CLK3-227ENST00000570296 JARID2Q92833 1246 aaPredicted RBP23.41■■□□□ 1.34
CLK3-227ENST00000570296 PRMT6Q96LA8 375 aaPredicted RBP23.41■■□□□ 1.34
CLK3-227ENST00000570296 SRRDQ9UH36 339 aa23.41■■□□□ 1.34
CLK3-227ENST00000570296 EVI5O60447 810 aa23.4■■□□□ 1.34
CLK3-227ENST00000570296 TNFAIP1Q13829 316 aa23.4■■□□□ 1.34
CLK3-227ENST00000570296 HELBQ8NG08 1087 aaPredicted RBP23.4■■□□□ 1.34
CLK3-227ENST00000570296 TTLL11Q8NHH1 800 aa23.4■■□□□ 1.34
CLK3-227ENST00000570296 ANKRD2Q9GZV1 360 aa23.4■■□□□ 1.34
CLK3-227ENST00000570296 RNF208Q9H0X6 261 aa23.4■■□□□ 1.34
CLK3-227ENST00000570296 CETPP11597 493 aa23.39■■□□□ 1.33
CLK3-227ENST00000570296 HOXD10P28358 340 aa23.39■■□□□ 1.33
CLK3-227ENST00000570296 TMPOP42166 694 aaKnown RBP23.39■■□□□ 1.33
CLK3-227ENST00000570296 VGLL4Q14135 290 aa23.39■■□□□ 1.33
CLK3-227ENST00000570296 RAET1EQ8TD07 263 aa23.39■■□□□ 1.33
CLK3-227ENST00000570296 GREM2Q9H772 168 aa23.39■■□□□ 1.33
CLK3-227ENST00000570296 CD209Q9NNX6 404 aa23.39■■□□□ 1.33
CLK3-227ENST00000570296 STAP2Q9UGK3 403 aa23.39■■□□□ 1.33
CLK3-227ENST00000570296 RIPOR2Q9Y4F9 1068 aa23.39■■□□□ 1.33
CLK3-227ENST00000570296 MAP3K9P80192 1104 aa23.38■■□□□ 1.33
CLK3-227ENST00000570296 TRIM47Q96LD4 638 aa23.38■■□□□ 1.33
CLK3-227ENST00000570296 CSADQ9Y600 493 aa23.38■■□□□ 1.33
CLK3-227ENST00000570296 AOX1Q06278 1338 aa23.37■■□□□ 1.33
CLK3-227ENST00000570296 CAPN2P17655 700 aa23.37■■□□□ 1.33
CLK3-227ENST00000570296 IGHMBP2P38935 993 aaKnown RBP23.37■■□□□ 1.33
CLK3-227ENST00000570296 FKBP1AP62942 108 aaKnown RBP23.37■■□□□ 1.33
CLK3-227ENST00000570296 UBXN2AP68543 259 aa23.37■■□□□ 1.33
CLK3-227ENST00000570296 U2AF1L4Q8WU68 220 aaKnown RBP23.37■■□□□ 1.33
CLK3-227ENST00000570296 SPDYE5A6NIY4 337 aa23.36■■□□□ 1.33
CLK3-227ENST00000570296 BTBD19C9JJ37 291 aa23.36■■□□□ 1.33
CLK3-227ENST00000570296 BMP8BP34820 402 aa23.36■■□□□ 1.33
CLK3-227ENST00000570296 PSMC4P43686 418 aa23.36■■□□□ 1.33
CLK3-227ENST00000570296 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.36■■□□□ 1.33
CLK3-227ENST00000570296 LAS1LQ9Y4W2 734 aaKnown RBP23.36■■□□□ 1.33
CLK3-227ENST00000570296 ARAP2Q8WZ64 1704 aa23.36■■□□□ 1.33
CLK3-227ENST00000570296 VCANP13611 3396 aa23.35■■□□□ 1.33
CLK3-227ENST00000570296 F8W031 263 aaPredicted RBP23.35■■□□□ 1.33
CLK3-227ENST00000570296 OSBPP22059 807 aa23.35■■□□□ 1.33
CLK3-227ENST00000570296 DUSP27Q5VZP5 1158 aa23.35■■□□□ 1.33
CLK3-227ENST00000570296 C17orf99Q6UX52 265 aa23.35■■□□□ 1.33
CLK3-227ENST00000570296 TEPSINQ96N21 525 aa23.35■■□□□ 1.33
CLK3-227ENST00000570296 METTL22Q9BUU2 404 aaPredicted RBP23.35■■□□□ 1.33
CLK3-227ENST00000570296 CTGFP29279 349 aa23.34■■□□□ 1.33
CLK3-227ENST00000570296 KCNJ4P48050 445 aa23.34■■□□□ 1.33
CLK3-227ENST00000570296 SPDYE2Q495Y8 402 aa23.34■■□□□ 1.33
CLK3-227ENST00000570296 PHAXQ9H814 394 aaKnown RBP23.34■■□□□ 1.33
CLK3-227ENST00000570296 MTMR10Q9NXD2 777 aa23.34■■□□□ 1.33
CLK3-227ENST00000570296 BIN2Q9UBW5 565 aaPredicted RBP23.34■■□□□ 1.33
CLK3-227ENST00000570296 MYPNQ86TC9 1320 aa23.33■■□□□ 1.33
CLK3-227ENST00000570296 ALPK3Q96L96 1907 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms