RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-219	ENST00000569225	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.17	□□□□□ -0.62
CHD9-219	ENST00000569225	KCNQ5	Q9NR82	932 aa		11.17	□□□□□ -0.62
CHD9-219	ENST00000569225	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.17	□□□□□ -0.62
CHD9-219	ENST00000569225	PDS5A	Q29RF7	1337 aa	Known RBP	11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	TIAM2	Q8IVF5	1701 aa		11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	SMARCA5	O60264	1052 aa	Predicted RBP	11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	GMPS	P49915	693 aa	Predicted RBP	11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	MMP14	P50281	582 aa		11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	CHAF1A	Q13111	956 aa	Predicted RBP	11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	DPF2	Q92785	391 aa		11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	SBF1	O95248	1867 aa		11.16	□□□□□ -0.62
CHD9-219	ENST00000569225	ARID4A	P29374	1257 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD9-219	ENST00000569225	ZGPAT	Q8N5A5	531 aa	Known RBP	11.15	□□□□□ -0.62
CHD9-219	ENST00000569225	ZNF526	Q8TF50	670 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD9-219	ENST00000569225	TLR7	Q9NYK1	1049 aa	Known RBP	11.15	□□□□□ -0.62
CHD9-219	ENST00000569225	RASGRF1	Q13972	1273 aa		11.15	□□□□□ -0.63
CHD9-219	ENST00000569225	MFSD14B	Q5SR56	506 aa		11.15	□□□□□ -0.63
CHD9-219	ENST00000569225	OGFOD1	Q8N543	542 aa		11.15	□□□□□ -0.63
CHD9-219	ENST00000569225	SPATA5	Q8NB90	893 aa		11.15	□□□□□ -0.63
CHD9-219	ENST00000569225	CCDC136	Q96JN2	1154 aa		11.15	□□□□□ -0.63
CHD9-219	ENST00000569225	HACL1	Q9UJ83	578 aa		11.15	□□□□□ -0.63
CHD9-219	ENST00000569225	CHD4	Q14839	1912 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	DICER1	Q9UPY3	1922 aa	Known RBP	11.14	□□□□□ -0.63
CHD9-219	ENST00000569225		H7C1D1	291 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	USP17L8	P0C7I0	530 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	VEGFA	P15692	232 aa	Predicted RBP	11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	NUCB1	Q02818	461 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	B4GALNT3	Q6L9W6	998 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	CHD1L	Q86WJ1	897 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	ECHDC1	Q9NTX5	307 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	GPRC5D	Q9NZD1	345 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	HDAC9	Q9UKV0	1011 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	JAG2	Q9Y219	1238 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	SUGT1	Q9Y2Z0	365 aa		11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.14	□□□□□ -0.63
CHD9-219	ENST00000569225	SCNN1D	P51172	638 aa		11.13	□□□□□ -0.63
CHD9-219	ENST00000569225	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD9-219	ENST00000569225	CENPQ	Q7L2Z9	268 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD9-219	ENST00000569225	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
CHD9-219	ENST00000569225	HMG20B	Q9P0W2	317 aa		11.13	□□□□□ -0.63
CHD9-219	ENST00000569225	CNOT7	Q9UIV1	285 aa	Known RBP	11.13	□□□□□ -0.63
CHD9-219	ENST00000569225	SALL1	Q9NSC2	1324 aa		11.13	□□□□□ -0.63
CHD9-219	ENST00000569225	ARAP2	Q8WZ64	1704 aa		11.13	□□□□□ -0.63
CHD9-219	ENST00000569225	PNMA8A	Q86V59	439 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	MICALL2	Q8IY33	904 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	GML	Q99445	158 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	MXD3	Q9BW11	206 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	RRAGC	Q9HB90	399 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	PPP4R2	Q9NY27	417 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	MAST3	O60307	1309 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	ERC2	O15083	957 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	IGSF3	O75054	1194 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	ATP5J	P18859	108 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	MX1	P20591	662 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	EPHX2	P34913	555 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	MCAM	P43121	646 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	ZNF280A	P59817	542 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	KIAA0825	Q8IV33	1275 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	CERS5	Q8N5B7	392 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	LNPK	Q9C0E8	428 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	NMRK2	Q9NPI5	230 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	ADARB2	Q9NS39	739 aa	Known RBP	11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	TTC41P	Q6P2S7	1318 aa		11.12	□□□□□ -0.63
CHD9-219	ENST00000569225	LDHB	P07195	334 aa	Known RBP	11.11	□□□□□ -0.63
CHD9-219	ENST00000569225	SCARF1	Q14162	830 aa		11.11	□□□□□ -0.63
CHD9-219	ENST00000569225	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.11	□□□□□ -0.63
CHD9-219	ENST00000569225	ABCF2	Q9UG63	623 aa		11.11	□□□□□ -0.63
CHD9-219	ENST00000569225	TTF2	Q9UNY4	1162 aa	Known RBP	11.11	□□□□□ -0.63
CHD9-219	ENST00000569225	COL1A1	P02452	1464 aa	Predicted RBP	11.11	□□□□□ -0.63
CHD9-219	ENST00000569225	CCDC88A	Q3V6T2	1871 aa		11.11	□□□□□ -0.63
CHD9-219	ENST00000569225		F8W031	263 aa	Predicted RBP	11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	EPS15	P42566	896 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	TTF1	Q15361	905 aa	Predicted RBP	11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	USP50	Q70EL3	339 aa	Predicted RBP	11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	SLF2	Q8IX21	1173 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	SNRK	Q9NRH2	765 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	GLRX3	O76003	335 aa	Known RBP	11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	ZAP70	P43403	619 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	HDLBP	Q00341	1268 aa	Known RBP	11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	PI16	Q6UXB8	463 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	ERICH6	Q7L0X2	663 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	DZIP1	Q86YF9	867 aa	Known RBP	11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	WDR90	Q96KV7	1748 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	MYOZ2	Q9NPC6	264 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	LRP2BP	Q9P2M1	347 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	SERPINA10	Q9UK55	444 aa		11.1	□□□□□ -0.63
CHD9-219	ENST00000569225	POTEC	B2RU33	542 aa		11.09	□□□□□ -0.63
CHD9-219	ENST00000569225	GSTO1	P78417	241 aa		11.09	□□□□□ -0.63
CHD9-219	ENST00000569225	KIF4B	Q2VIQ3	1234 aa		11.09	□□□□□ -0.63
CHD9-219	ENST00000569225	TMED8	Q6PL24	325 aa	Predicted RBP	11.09	□□□□□ -0.63
CHD9-219	ENST00000569225	TEKT1	Q969V4	418 aa		11.09	□□□□□ -0.63
CHD9-219	ENST00000569225	DNAJC2	Q99543	621 aa	Known RBP	11.09	□□□□□ -0.63
CHD9-219	ENST00000569225	HAUS7	Q99871	368 aa		11.09	□□□□□ -0.63
CHD9-219	ENST00000569225	MRI	Q9BWK5	157 aa		11.09	□□□□□ -0.63
CHD9-219	ENST00000569225	BOLA2	Q9H3K6	86 aa		11.09	□□□□□ -0.63
CHD9-219	ENST00000569225	RAI14	Q9P0K7	980 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 217.6 ms