RNA–Protein interactions for RNA: ENST00000569136.5

CAPN3-219, Transcript of calpain 3, humanhuman

TSL 2 BASIC

Gene CAPN3, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-219ENST00000569136 PCDHB15Q9Y5E8 787 aa11.71□□□□□ -0.53
CAPN3-219ENST00000569136 KDM3BQ7LBC6 1761 aa11.71□□□□□ -0.54
CAPN3-219ENST00000569136 TLL1O43897 1013 aa11.7□□□□□ -0.54
CAPN3-219ENST00000569136 FMNL1O95466 1100 aaPredicted RBP11.7□□□□□ -0.54
CAPN3-219ENST00000569136 CT47B1P0C2W7 299 aaPredicted RBP11.7□□□□□ -0.54
CAPN3-219ENST00000569136 KCNC4Q03721 635 aa11.7□□□□□ -0.54
CAPN3-219ENST00000569136 FLIIQ13045 1269 aa11.7□□□□□ -0.54
CAPN3-219ENST00000569136 C9orf131Q5VYM1 1079 aa11.7□□□□□ -0.54
CAPN3-219ENST00000569136 SYMPKQ92797 1274 aaKnown RBP11.7□□□□□ -0.54
CAPN3-219ENST00000569136 MYD88Q99836 296 aa11.7□□□□□ -0.54
CAPN3-219ENST00000569136 CWC25Q9NXE8 425 aaPredicted RBP11.7□□□□□ -0.54
CAPN3-219ENST00000569136 PCDHGC3Q9UN70 934 aa11.7□□□□□ -0.54
CAPN3-219ENST00000569136 TCERG1O14776 1098 aaKnown RBP11.69□□□□□ -0.54
CAPN3-219ENST00000569136 HCLS1P14317 486 aaPredicted RBP11.69□□□□□ -0.54
CAPN3-219ENST00000569136 FKBP5Q13451 457 aaPredicted RBP11.69□□□□□ -0.54
CAPN3-219ENST00000569136 SF3B3Q15393 1217 aaKnown RBP11.69□□□□□ -0.54
CAPN3-219ENST00000569136 RNF19BQ6ZMZ0 732 aa11.69□□□□□ -0.54
CAPN3-219ENST00000569136 DDX46Q7L014 1031 aaKnown RBP11.69□□□□□ -0.54
CAPN3-219ENST00000569136 TMC4Q7Z404 712 aa11.69□□□□□ -0.54
CAPN3-219ENST00000569136 TRMT2AQ8IZ69 625 aaKnown RBP11.69□□□□□ -0.54
CAPN3-219ENST00000569136 FAM89AQ96GI7 184 aa11.69□□□□□ -0.54
CAPN3-219ENST00000569136 LTBP3Q9NS15 1303 aa11.68□□□□□ -0.54
CAPN3-219ENST00000569136 VIRMAQ69YN4 1812 aaKnown RBP11.68□□□□□ -0.54
CAPN3-219ENST00000569136 IRS4O14654 1257 aaPredicted RBP11.68□□□□□ -0.54
CAPN3-219ENST00000569136 PCCAP05165 728 aaPredicted RBP11.68□□□□□ -0.54
CAPN3-219ENST00000569136 GJA5P36382 358 aa11.68□□□□□ -0.54
CAPN3-219ENST00000569136 CCDC93Q567U6 631 aa11.68□□□□□ -0.54
CAPN3-219ENST00000569136 G2E3Q7L622 706 aa11.68□□□□□ -0.54
CAPN3-219ENST00000569136 TAOK3Q9H2K8 898 aa11.68□□□□□ -0.54
CAPN3-219ENST00000569136 GOPCQ9HD26 462 aa11.68□□□□□ -0.54
CAPN3-219ENST00000569136 ZC3H4Q9UPT8 1303 aaKnown RBP11.67□□□□□ -0.54
CAPN3-219ENST00000569136 MTMR2Q13614 643 aa11.67□□□□□ -0.54
CAPN3-219ENST00000569136 SYNE4Q8N205 404 aa11.67□□□□□ -0.54
CAPN3-219ENST00000569136 DNAAF4Q8WXU2 420 aa11.67□□□□□ -0.54
CAPN3-219ENST00000569136 SPSB2Q99619 263 aa11.67□□□□□ -0.54
CAPN3-219ENST00000569136 RNF181Q9P0P0 153 aa11.67□□□□□ -0.54
CAPN3-219ENST00000569136 RIC1Q4ADV7 1423 aa11.67□□□□□ -0.54
CAPN3-219ENST00000569136 PDE8AO60658 829 aa11.66□□□□□ -0.54
CAPN3-219ENST00000569136 QPCTQ16769 361 aa11.66□□□□□ -0.54
CAPN3-219ENST00000569136 SP8Q8IXZ3 490 aa11.66□□□□□ -0.54
CAPN3-219ENST00000569136 LINS1Q8NG48 757 aa11.66□□□□□ -0.54
CAPN3-219ENST00000569136 TSC1Q92574 1164 aa11.66□□□□□ -0.54
CAPN3-219ENST00000569136 PSMD1Q99460 953 aa11.66□□□□□ -0.54
CAPN3-219ENST00000569136 VPS33BQ9H267 617 aa11.66□□□□□ -0.54
CAPN3-219ENST00000569136 ATP6V0A2Q9Y487 856 aa11.66□□□□□ -0.54
CAPN3-219ENST00000569136 NEURL1BA8MQ27 555 aa11.65□□□□□ -0.54
CAPN3-219ENST00000569136 H7C1W4 665 aa11.65□□□□□ -0.54
CAPN3-219ENST00000569136 NFKBIEO00221 500 aa11.65□□□□□ -0.54
CAPN3-219ENST00000569136 IGKV5-2P06315 115 aa11.65□□□□□ -0.54
CAPN3-219ENST00000569136 FKBP4Q02790 459 aaKnown RBP eCLIP11.65□□□□□ -0.54
CAPN3-219ENST00000569136 GRAPQ13588 217 aa11.65□□□□□ -0.54
CAPN3-219ENST00000569136 ALDH1L2Q3SY69 923 aa11.65□□□□□ -0.54
CAPN3-219ENST00000569136 CCDC152Q4G0S7 254 aa11.65□□□□□ -0.54
CAPN3-219ENST00000569136 NKX2-3Q8TAU0 364 aa11.65□□□□□ -0.54
CAPN3-219ENST00000569136 GRAPLQ8TC17 118 aaPredicted RBP11.65□□□□□ -0.54
CAPN3-219ENST00000569136 ABCC12Q96J65 1359 aa11.65□□□□□ -0.55
CAPN3-219ENST00000569136 KDM2BQ8NHM5 1336 aa11.64□□□□□ -0.55
CAPN3-219ENST00000569136 ITGBL1O95965 494 aaPredicted RBP11.64□□□□□ -0.55
CAPN3-219ENST00000569136 RPS8P62241 208 aaKnown RBP11.64□□□□□ -0.55
CAPN3-219ENST00000569136 GCKRQ14397 625 aa11.64□□□□□ -0.55
CAPN3-219ENST00000569136 BRICD5Q6PL45 260 aa11.64□□□□□ -0.55
CAPN3-219ENST00000569136 SUPT20HQ8NEM7 779 aa11.64□□□□□ -0.55
CAPN3-219ENST00000569136 KIF13BQ9NQT8 1826 aa11.64□□□□□ -0.55
CAPN3-219ENST00000569136 NRXN2Q9P2S2 1712 aa11.63□□□□□ -0.55
CAPN3-219ENST00000569136 CDHR2Q9BYE9 1310 aa11.63□□□□□ -0.55
CAPN3-219ENST00000569136 PPEF1O14829 653 aaPredicted RBP11.63□□□□□ -0.55
CAPN3-219ENST00000569136 ALDH1L1O75891 902 aa11.63□□□□□ -0.55
CAPN3-219ENST00000569136 ADH1BP00325 375 aa11.63□□□□□ -0.55
CAPN3-219ENST00000569136 RASSF7Q02833 373 aa11.63□□□□□ -0.55
CAPN3-219ENST00000569136 RTL5Q5HYW3 569 aaPredicted RBP11.63□□□□□ -0.55
CAPN3-219ENST00000569136 SSH1Q8WYL5 1049 aa11.63□□□□□ -0.55
CAPN3-219ENST00000569136 USB1Q9BQ65 265 aaKnown RBP11.63□□□□□ -0.55
CAPN3-219ENST00000569136 PLA2G2EQ9NZK7 142 aa11.63□□□□□ -0.55
CAPN3-219ENST00000569136 ADCY9O60503 1353 aa11.63□□□□□ -0.55
CAPN3-219ENST00000569136 PTPRCP08575 1304 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 GLTPD2A6NH11 291 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 HNRNPUQ00839 825 aaKnown RBP eCLIP11.62□□□□□ -0.55
CAPN3-219ENST00000569136 TUSC1Q2TAM9 212 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 CWF19L2Q2TBE0 894 aaKnown RBP11.62□□□□□ -0.55
CAPN3-219ENST00000569136 BEND3Q5T5X7 828 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 PRPF38BQ5VTL8 546 aaKnown RBP11.62□□□□□ -0.55
CAPN3-219ENST00000569136 RETREG3Q86VR2 466 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 MPNDQ8N594 471 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 JDP2Q8WYK2 163 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 THAP11Q96EK4 314 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 PLA2G12BQ9BX93 195 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 SCN7AQ01118 1682 aa11.62□□□□□ -0.55
CAPN3-219ENST00000569136 ABCC4O15439 1325 aa11.61□□□□□ -0.55
CAPN3-219ENST00000569136 SPDYE5A6NIY4 337 aa11.61□□□□□ -0.55
CAPN3-219ENST00000569136 F6X3S4 739 aa11.61□□□□□ -0.55
CAPN3-219ENST00000569136 LILRB3O75022 631 aa11.61□□□□□ -0.55
CAPN3-219ENST00000569136 IARSP41252 1262 aaKnown RBP11.61□□□□□ -0.55
CAPN3-219ENST00000569136 TTLL11Q8NHH1 800 aa11.61□□□□□ -0.55
CAPN3-219ENST00000569136 PRR7Q8TB68 274 aa11.61□□□□□ -0.55
CAPN3-219ENST00000569136 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.61□□□□□ -0.55
CAPN3-219ENST00000569136 RTFDC1Q9BY42 306 aaPredicted RBP11.61□□□□□ -0.55
CAPN3-219ENST00000569136 SRCIN1Q9C0H9 1055 aa11.61□□□□□ -0.55
CAPN3-219ENST00000569136 ZNF277Q9NRM2 450 aaPredicted RBP11.61□□□□□ -0.55
CAPN3-219ENST00000569136 C9orf78Q9NZ63 289 aaPredicted RBP11.61□□□□□ -0.55
CAPN3-219ENST00000569136 LAMB4A4D0S4 1761 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms