RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 RTFDC1Q9BY42 306 aaPredicted RBP12.81□□□□□ -0.36
CDH3-210ENST00000569117 GPBP1L1Q9HC44 474 aaPredicted RBP12.81□□□□□ -0.36
CDH3-210ENST00000569117 TLR7Q9NYK1 1049 aaKnown RBP12.81□□□□□ -0.36
CDH3-210ENST00000569117 DBNLQ9UJU6 430 aaKnown RBP12.81□□□□□ -0.36
CDH3-210ENST00000569117 GGA1Q9UJY5 639 aa12.81□□□□□ -0.36
CDH3-210ENST00000569117 NSFL1CQ9UNZ2 370 aaKnown RBP12.81□□□□□ -0.36
CDH3-210ENST00000569117 ZNF646O15015 1829 aaPredicted RBP12.81□□□□□ -0.36
CDH3-210ENST00000569117 PSME4Q14997 1843 aa12.81□□□□□ -0.36
CDH3-210ENST00000569117 AKAP11Q9UKA4 1901 aa12.8□□□□□ -0.36
CDH3-210ENST00000569117 SNAP23O00161 211 aa12.8□□□□□ -0.36
CDH3-210ENST00000569117 IFIT2P09913 472 aaKnown RBP12.8□□□□□ -0.36
CDH3-210ENST00000569117 KCNJ4P48050 445 aa12.8□□□□□ -0.36
CDH3-210ENST00000569117 RTKN2Q8IZC4 609 aa12.8□□□□□ -0.36
CDH3-210ENST00000569117 KRI1Q8N9T8 703 aaKnown RBP12.8□□□□□ -0.36
CDH3-210ENST00000569117 PSMD1Q99460 953 aa12.8□□□□□ -0.36
CDH3-210ENST00000569117 DBNDD2Q9BQY9 259 aa12.8□□□□□ -0.36
CDH3-210ENST00000569117 BCS1LQ9Y276 419 aa12.8□□□□□ -0.36
CDH3-210ENST00000569117 LTBP3Q9NS15 1303 aa12.8□□□□□ -0.36
CDH3-210ENST00000569117 WTIPA6NIX2 430 aaPredicted RBP12.79□□□□□ -0.36
CDH3-210ENST00000569117 MX1P20591 662 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 ADORA1P30542 326 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 TIMM10P62072 90 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 OTUD7AQ8TE49 926 aaPredicted RBP12.79□□□□□ -0.36
CDH3-210ENST00000569117 XAGE2Q96GT9 111 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 GPATCH3Q96I76 525 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 POLLQ9UGP5 575 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 WWC3Q9ULE0 1092 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 AK9Q5TCS8 1911 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 DICER1Q9UPY3 1922 aaKnown RBP12.79□□□□□ -0.36
CDH3-210ENST00000569117 AOX1Q06278 1338 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 TTC41PQ6P2S7 1318 aa12.79□□□□□ -0.36
CDH3-210ENST00000569117 KLRK1P26718 216 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 FKBP4Q02790 459 aaKnown RBP eCLIP12.78□□□□□ -0.36
CDH3-210ENST00000569117 GPIHBP1Q8IV16 184 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 C16orf71Q8IYS4 520 aaPredicted RBP12.78□□□□□ -0.36
CDH3-210ENST00000569117 SUPT20HQ8NEM7 779 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 IL27Q8NEV9 243 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 NEUROD6Q96NK8 337 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 CCDC8Q9H0W5 538 aaPredicted RBP12.78□□□□□ -0.36
CDH3-210ENST00000569117 OSBPL3Q9H4L5 887 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 STAP2Q9UGK3 403 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 TIAM2Q8IVF5 1701 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 DOCK2Q92608 1830 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 SBF1O95248 1867 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 CCDC88AQ3V6T2 1871 aa12.78□□□□□ -0.36
CDH3-210ENST00000569117 COL4A5P29400 1685 aa12.77□□□□□ -0.36
CDH3-210ENST00000569117 MAST2Q6P0Q8 1798 aa12.77□□□□□ -0.36
CDH3-210ENST00000569117 C6orf229H3BNL8 230 aa12.77□□□□□ -0.37
CDH3-210ENST00000569117 NFKBIEO00221 500 aa12.77□□□□□ -0.37
CDH3-210ENST00000569117 MLLT3P42568 568 aaPredicted RBP12.77□□□□□ -0.37
CDH3-210ENST00000569117 PDE1AP54750 535 aa12.77□□□□□ -0.37
CDH3-210ENST00000569117 PLEKHM2Q8IWE5 1019 aa12.77□□□□□ -0.37
CDH3-210ENST00000569117 ZNF512BQ96KM6 892 aaPredicted RBP12.77□□□□□ -0.37
CDH3-210ENST00000569117 GPR101Q96P66 508 aaPredicted RBP12.77□□□□□ -0.37
CDH3-210ENST00000569117 EYA3Q99504 573 aa12.77□□□□□ -0.37
CDH3-210ENST00000569117 BCL11AQ9H165 835 aa12.77□□□□□ -0.37
CDH3-210ENST00000569117 ECHDC1Q9NTX5 307 aa12.77□□□□□ -0.37
CDH3-210ENST00000569117 COL1A1P02452 1464 aaPredicted RBP12.77□□□□□ -0.37
CDH3-210ENST00000569117 CHD4Q14839 1912 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 ARID4AP29374 1257 aaPredicted RBP12.76□□□□□ -0.37
CDH3-210ENST00000569117 PHKA1P46020 1223 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 KIAA2012Q0VF49 1180 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 CAVIN4Q5BKX8 364 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 GORABQ5T7V8 394 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 CCDC102BQ68D86 513 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 ZNF804AQ7Z570 1209 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 TXNRD3Q86VQ6 643 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 SKAP1Q86WV1 359 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 PI4K2BQ8TCG2 481 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 FAM84BQ96KN1 310 aaPredicted RBP12.76□□□□□ -0.37
CDH3-210ENST00000569117 VPS33BQ9H267 617 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 TAOK3Q9H2K8 898 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 MYH7P12883 1935 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 SCN9AQ15858 1988 aa12.76□□□□□ -0.37
CDH3-210ENST00000569117 ERC2O15083 957 aa12.75□□□□□ -0.37
CDH3-210ENST00000569117 UQCRFS1P1P0C7P4 283 aa12.75□□□□□ -0.37
CDH3-210ENST00000569117 YBX3P16989 372 aaKnown RBP eCLIP12.75□□□□□ -0.37
CDH3-210ENST00000569117 ATP5JP18859 108 aa12.75□□□□□ -0.37
CDH3-210ENST00000569117 GYG1P46976 350 aa12.75□□□□□ -0.37
CDH3-210ENST00000569117 WASHC4Q2M389 1173 aa12.75□□□□□ -0.37
CDH3-210ENST00000569117 CCDC158Q5M9N0 1113 aa12.75□□□□□ -0.37
CDH3-210ENST00000569117 TSHZ3Q63HK5 1081 aa12.75□□□□□ -0.37
CDH3-210ENST00000569117 FBXO33Q7Z6M2 555 aa12.75□□□□□ -0.37
CDH3-210ENST00000569117 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.75□□□□□ -0.37
CDH3-210ENST00000569117 PDS5AQ29RF7 1337 aaKnown RBP12.74□□□□□ -0.37
CDH3-210ENST00000569117 GLRX3O76003 335 aaKnown RBP12.74□□□□□ -0.37
CDH3-210ENST00000569117 HIBADHP31937 336 aaKnown RBP12.74□□□□□ -0.37
CDH3-210ENST00000569117 RGS3P49796 1198 aa12.74□□□□□ -0.37
CDH3-210ENST00000569117 BCAMP50895 628 aa12.74□□□□□ -0.37
CDH3-210ENST00000569117 TTC39AQ5SRH9 613 aa12.74□□□□□ -0.37
CDH3-210ENST00000569117 ZC3H12CQ9C0D7 883 aaKnown RBP12.74□□□□□ -0.37
CDH3-210ENST00000569117 COA1Q9GZY4 146 aa12.74□□□□□ -0.37
CDH3-210ENST00000569117 KDM4CQ9H3R0 1056 aa12.74□□□□□ -0.37
CDH3-210ENST00000569117 PPIP5K2O43314 1243 aa12.73□□□□□ -0.37
CDH3-210ENST00000569117 IL1R1P14778 569 aa12.73□□□□□ -0.37
CDH3-210ENST00000569117 IARSP41252 1262 aaKnown RBP12.73□□□□□ -0.37
CDH3-210ENST00000569117 RASSF7Q02833 373 aa12.73□□□□□ -0.37
CDH3-210ENST00000569117 RASGRF1Q13972 1273 aa12.73□□□□□ -0.37
CDH3-210ENST00000569117 SCARF1Q14162 830 aa12.73□□□□□ -0.37
CDH3-210ENST00000569117 AOC3Q16853 763 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms