RNA–Protein interactions for RNA: ENST00000568993.5

SNX20-204, Transcript of sorting nexin 20, humanhuman

TSL 1 (best)

Gene SNX20, Length 2,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX20-204ENST00000568993 LARP6Q9BRS8 491 aaKnown RBP18.5■□□□□ 0.55
SNX20-204ENST00000568993 TRIM37O94972 964 aa18.5■□□□□ 0.55
SNX20-204ENST00000568993 PDE6AP16499 860 aa18.5■□□□□ 0.55
SNX20-204ENST00000568993 SKOR2Q2VWA4 1001 aaPredicted RBP18.5■□□□□ 0.55
SNX20-204ENST00000568993 GPAA1O43292 621 aa18.49■□□□□ 0.55
SNX20-204ENST00000568993 IDH1O75874 414 aaKnown RBP18.49■□□□□ 0.55
SNX20-204ENST00000568993 ST3GAL1Q11201 340 aa18.49■□□□□ 0.55
SNX20-204ENST00000568993 DHX32Q7L7V1 743 aaKnown RBP18.49■□□□□ 0.55
SNX20-204ENST00000568993 ZNF532Q9HCE3 1301 aa18.49■□□□□ 0.55
SNX20-204ENST00000568993 E7EWF7 191 aa18.48■□□□□ 0.55
SNX20-204ENST00000568993 FGAP02671 866 aa18.48■□□□□ 0.55
SNX20-204ENST00000568993 EXOSC10Q01780 885 aaKnown RBP18.48■□□□□ 0.55
SNX20-204ENST00000568993 MAP3K12Q12852 859 aa18.48■□□□□ 0.55
SNX20-204ENST00000568993 WWC3Q9ULE0 1092 aa18.48■□□□□ 0.55
SNX20-204ENST00000568993 SMC3Q9UQE7 1217 aa18.48■□□□□ 0.55
SNX20-204ENST00000568993 WDR33Q9C0J8 1336 aaKnown RBP18.48■□□□□ 0.55
SNX20-204ENST00000568993 ZBTB22O15209 634 aa18.47■□□□□ 0.55
SNX20-204ENST00000568993 GYS1P13807 737 aa18.47■□□□□ 0.55
SNX20-204ENST00000568993 CCDC83Q8IWF9 413 aa18.47■□□□□ 0.55
SNX20-204ENST00000568993 AGXT2Q9BYV1 514 aa18.47■□□□□ 0.55
SNX20-204ENST00000568993 ANKRD2Q9GZV1 360 aa18.47■□□□□ 0.55
SNX20-204ENST00000568993 GNL3LQ9NVN8 582 aaKnown RBP18.47■□□□□ 0.55
SNX20-204ENST00000568993 TNRC6CQ9HCJ0 1690 aaKnown RBP18.47■□□□□ 0.55
SNX20-204ENST00000568993 PDIA4P13667 645 aaKnown RBP18.47■□□□□ 0.55
SNX20-204ENST00000568993 IMMTQ16891 758 aaKnown RBP18.47■□□□□ 0.55
SNX20-204ENST00000568993 PROM2Q8N271 834 aa18.47■□□□□ 0.55
SNX20-204ENST00000568993 FBXL16Q8N461 479 aa18.47■□□□□ 0.55
SNX20-204ENST00000568993 TCEANC2Q96MN5 208 aa18.47■□□□□ 0.55
SNX20-204ENST00000568993 TTLL5Q6EMB2 1281 aa18.46■□□□□ 0.55
SNX20-204ENST00000568993 TXNRD1Q16881 649 aa18.45■□□□□ 0.54
SNX20-204ENST00000568993 Q6ZUG5 572 aa18.45■□□□□ 0.54
SNX20-204ENST00000568993 CNBD1Q8NA66 436 aa18.45■□□□□ 0.54
SNX20-204ENST00000568993 A0A0G2JLW4 131 aa18.45■□□□□ 0.54
SNX20-204ENST00000568993 PLSCR1O15162 318 aa18.45■□□□□ 0.54
SNX20-204ENST00000568993 ALX1Q15699 326 aa18.45■□□□□ 0.54
SNX20-204ENST00000568993 CAVIN4Q5BKX8 364 aa18.45■□□□□ 0.54
SNX20-204ENST00000568993 FBXO33Q7Z6M2 555 aa18.45■□□□□ 0.54
SNX20-204ENST00000568993 FAM84BQ96KN1 310 aaPredicted RBP18.45■□□□□ 0.54
SNX20-204ENST00000568993 STRBPQ96SI9 672 aaKnown RBP18.45■□□□□ 0.54
SNX20-204ENST00000568993 ZMYM6O95789 1325 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 SEMA3EO15041 775 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 GJB2P29033 226 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 NECAB1Q8N987 351 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 SYT1P21579 422 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 GYG1P46976 350 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 MCTP1Q6DN14 999 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 PRR5LQ6MZQ0 368 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 CCDC24Q8N4L8 307 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 MAGEB6Q8N7X4 407 aa18.44■□□□□ 0.54
SNX20-204ENST00000568993 PDS5AQ29RF7 1337 aaKnown RBP18.43■□□□□ 0.54
SNX20-204ENST00000568993 STX6O43752 255 aa18.43■□□□□ 0.54
SNX20-204ENST00000568993 AIDAQ96BJ3 306 aa18.43■□□□□ 0.54
SNX20-204ENST00000568993 LMBRD1Q9NUN5 540 aa18.43■□□□□ 0.54
SNX20-204ENST00000568993 EP400Q96L91 3159 aa18.43■□□□□ 0.54
SNX20-204ENST00000568993 WTIPA6NIX2 430 aaPredicted RBP18.42■□□□□ 0.54
SNX20-204ENST00000568993 NPHP1O15259 732 aa18.42■□□□□ 0.54
SNX20-204ENST00000568993 GRAPQ13588 217 aa18.42■□□□□ 0.54
SNX20-204ENST00000568993 GRAPLQ8TC17 118 aaPredicted RBP18.42■□□□□ 0.54
SNX20-204ENST00000568993 DENND2AQ9ULE3 1009 aa18.42■□□□□ 0.54
SNX20-204ENST00000568993 PNPLA7Q6ZV29 1317 aa18.42■□□□□ 0.54
SNX20-204ENST00000568993 ZNF213O14771 459 aa18.42■□□□□ 0.54
SNX20-204ENST00000568993 ZSCAN22P10073 491 aaPredicted RBP18.42■□□□□ 0.54
SNX20-204ENST00000568993 CRY2Q49AN0 593 aa18.42■□□□□ 0.54
SNX20-204ENST00000568993 GTF3C6Q969F1 213 aa18.42■□□□□ 0.54
SNX20-204ENST00000568993 PATL2C9JE40 543 aaKnown RBP18.41■□□□□ 0.54
SNX20-204ENST00000568993 EVCP57679 992 aa18.41■□□□□ 0.54
SNX20-204ENST00000568993 BRF1Q92994 677 aa18.41■□□□□ 0.54
SNX20-204ENST00000568993 COL1A1P02452 1464 aaPredicted RBP18.41■□□□□ 0.54
SNX20-204ENST00000568993 WDR19Q8NEZ3 1342 aa18.41■□□□□ 0.54
SNX20-204ENST00000568993 IRS2Q9Y4H2 1338 aa18.41■□□□□ 0.54
SNX20-204ENST00000568993 PFKFB2O60825 505 aa18.4■□□□□ 0.54
SNX20-204ENST00000568993 SERPINB2P05120 415 aa18.4■□□□□ 0.54
SNX20-204ENST00000568993 GNAT2P19087 354 aa18.4■□□□□ 0.54
SNX20-204ENST00000568993 KLHL40Q2TBA0 621 aa18.4■□□□□ 0.54
SNX20-204ENST00000568993 LRP2BPQ9P2M1 347 aa18.4■□□□□ 0.54
SNX20-204ENST00000568993 VPS37DQ86XT2 251 aa18.4■□□□□ 0.54
SNX20-204ENST00000568993 MB21D2Q8IYB1 491 aaPredicted RBP18.4■□□□□ 0.54
SNX20-204ENST00000568993 PDCP20941 246 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 HAND2P61296 217 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 ST5P78524 1137 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 FGD1P98174 961 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 FOXD4L5Q5VV16 416 aaPredicted RBP18.39■□□□□ 0.53
SNX20-204ENST00000568993 NCOA7Q8NI08 942 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 FOXD4L4Q8WXT5 416 aaPredicted RBP18.39■□□□□ 0.53
SNX20-204ENST00000568993 ZNF274Q96GC6 653 aaPredicted RBP18.39■□□□□ 0.53
SNX20-204ENST00000568993 LLPHQ9BRT6 129 aaKnown RBP18.39■□□□□ 0.53
SNX20-204ENST00000568993 MBD4O95243 580 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 MCM5P33992 734 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 LRRC2Q9BYS8 371 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 NBPF3Q9H094 633 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 MTMR6Q9Y217 621 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 LEMD3Q9Y2U8 911 aa18.39■□□□□ 0.53
SNX20-204ENST00000568993 HIBADHP31937 336 aaKnown RBP18.38■□□□□ 0.53
SNX20-204ENST00000568993 TMED8Q6PL24 325 aaPredicted RBP18.38■□□□□ 0.53
SNX20-204ENST00000568993 IFNL3Q8IZI9 196 aa18.38■□□□□ 0.53
SNX20-204ENST00000568993 AKT1S1Q96B36 256 aa18.38■□□□□ 0.53
SNX20-204ENST00000568993 CHMP4CQ96CF2 233 aa18.38■□□□□ 0.53
SNX20-204ENST00000568993 IQSEC3Q9UPP2 1182 aaPredicted RBP18.38■□□□□ 0.53
SNX20-204ENST00000568993 CACNA1SQ13698 1873 aa18.38■□□□□ 0.53
SNX20-204ENST00000568993 KLRG2A4D1S0 409 aaPredicted RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms