RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RTL9Q8NET4 1388 aa23.95■■□□□ 1.42
CLN3-230ENST00000568076 IDH1O75874 414 aaKnown RBP23.95■■□□□ 1.42
CLN3-230ENST00000568076 LAMB2P55268 1798 aa23.95■■□□□ 1.42
CLN3-230ENST00000568076 PHF14O94880 888 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 SLC5A1P13866 664 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 PDIA3P30101 505 aaKnown RBP23.94■■□□□ 1.42
CLN3-230ENST00000568076 KCNQ4P56696 695 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 UBE3CQ15386 1083 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 VPS72Q15906 364 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 TSPY26PQ9H489 355 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 GPHNQ9NQX3 736 aaPredicted RBP23.94■■□□□ 1.42
CLN3-230ENST00000568076 WWC3Q9ULE0 1092 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 ZNF532Q9HCE3 1301 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 COL4A1P02462 1669 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 TCRBV5S4A2TA0A5A2 114 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 PDE6AP16499 860 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 CCT2P78371 535 aaKnown RBP23.94■■□□□ 1.42
CLN3-230ENST00000568076 PTF1AQ7RTS3 328 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 NCOA5Q9HCD5 579 aaKnown RBP23.94■■□□□ 1.42
CLN3-230ENST00000568076 ZNF831Q5JPB2 1677 aa23.94■■□□□ 1.42
CLN3-230ENST00000568076 MB21D2Q8IYB1 491 aaPredicted RBP23.93■■□□□ 1.42
CLN3-230ENST00000568076 ANP32BQ92688 251 aaKnown RBP23.93■■□□□ 1.42
CLN3-230ENST00000568076 ZNF274Q96GC6 653 aaPredicted RBP23.93■■□□□ 1.42
CLN3-230ENST00000568076 PTPDC1A2A3K4 754 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 EVCP57679 992 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 RESTQ13127 1097 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 RASGRF1Q13972 1273 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 SPATA5Q8NB90 893 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 RNF214Q8ND24 703 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 NGLY1Q96IV0 654 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 NBPF3Q9H094 633 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 ZNF652Q9Y2D9 606 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 ELP1O95163 1332 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 SALL1Q9NSC2 1324 aa23.92■■□□□ 1.42
CLN3-230ENST00000568076 IGHMBP2P38935 993 aaKnown RBP23.91■■□□□ 1.42
CLN3-230ENST00000568076 ANTXR2P58335 489 aa23.91■■□□□ 1.42
CLN3-230ENST00000568076 CLEC4GQ6UXB4 293 aa23.91■■□□□ 1.42
CLN3-230ENST00000568076 FAM184AQ8NB25 1140 aa23.91■■□□□ 1.42
CLN3-230ENST00000568076 TRIM44Q96DX7 344 aaPredicted RBP23.91■■□□□ 1.42
CLN3-230ENST00000568076 ZNF213O14771 459 aa23.91■■□□□ 1.42
CLN3-230ENST00000568076 SMIM5Q71RC9 77 aa23.9■■□□□ 1.42
CLN3-230ENST00000568076 TFIP11Q9UBB9 837 aaKnown RBP23.9■■□□□ 1.42
CLN3-230ENST00000568076 NAP1L2Q9ULW6 460 aaPredicted RBP23.9■■□□□ 1.42
CLN3-230ENST00000568076 UBAP1LF5GYI3 381 aa23.89■■□□□ 1.42
CLN3-230ENST00000568076 PRC1O43663 620 aa23.89■■□□□ 1.42
CLN3-230ENST00000568076 C3orf67Q6ZVT6 689 aa23.89■■□□□ 1.42
CLN3-230ENST00000568076 PDLIM2Q96JY6 352 aa23.89■■□□□ 1.42
CLN3-230ENST00000568076 H3BQV1 296 aa23.89■■□□□ 1.41
CLN3-230ENST00000568076 MCM5P33992 734 aa23.89■■□□□ 1.41
CLN3-230ENST00000568076 BCAMP50895 628 aa23.89■■□□□ 1.41
CLN3-230ENST00000568076 HMGN5P82970 282 aaKnown RBP23.89■■□□□ 1.41
CLN3-230ENST00000568076 CHRNDQ07001 517 aa23.89■■□□□ 1.41
CLN3-230ENST00000568076 ERFEQ4G0M1 354 aa23.89■■□□□ 1.41
CLN3-230ENST00000568076 IFFO2Q5TF58 517 aa23.89■■□□□ 1.41
CLN3-230ENST00000568076 NCOA7Q8NI08 942 aa23.89■■□□□ 1.41
CLN3-230ENST00000568076 NKX2-3Q8TAU0 364 aa23.89■■□□□ 1.41
CLN3-230ENST00000568076 PPFIA3O75145 1194 aa23.88■■□□□ 1.41
CLN3-230ENST00000568076 LETM1O95202 739 aaPredicted RBP23.88■■□□□ 1.41
CLN3-230ENST00000568076 STRBPQ96SI9 672 aaKnown RBP23.88■■□□□ 1.41
CLN3-230ENST00000568076 SCAND2PQ9GZW5 306 aaPredicted RBP23.88■■□□□ 1.41
CLN3-230ENST00000568076 DENND2AQ9ULE3 1009 aa23.88■■□□□ 1.41
CLN3-230ENST00000568076 TBC1D10CQ8IV04 446 aa23.87■■□□□ 1.41
CLN3-230ENST00000568076 LEO1Q8WVC0 666 aaPredicted RBP23.87■■□□□ 1.41
CLN3-230ENST00000568076 CNTNAP4Q9C0A0 1308 aa23.87■■□□□ 1.41
CLN3-230ENST00000568076 DOCK2Q92608 1830 aa23.87■■□□□ 1.41
CLN3-230ENST00000568076 ESPNB1AK53 854 aa23.87■■□□□ 1.41
CLN3-230ENST00000568076 FNBP4Q8N3X1 1017 aaPredicted RBP23.87■■□□□ 1.41
CLN3-230ENST00000568076 SPATA32Q96LK8 384 aa23.87■■□□□ 1.41
CLN3-230ENST00000568076 NAA16Q6N069 864 aaPredicted RBP23.86■■□□□ 1.41
CLN3-230ENST00000568076 RALYLQ86SE5 291 aaKnown RBP23.86■■□□□ 1.41
CLN3-230ENST00000568076 MAGEB6Q8N7X4 407 aa23.86■■□□□ 1.41
CLN3-230ENST00000568076 ZSCAN16Q9H4T2 348 aaPredicted RBP23.86■■□□□ 1.41
CLN3-230ENST00000568076 BCL2L12Q9HB09 334 aa23.86■■□□□ 1.41
CLN3-230ENST00000568076 APPP05067 770 aa23.85■■□□□ 1.41
CLN3-230ENST00000568076 FDPSP14324 419 aaKnown RBP23.85■■□□□ 1.41
CLN3-230ENST00000568076 FOSBP53539 338 aa23.85■■□□□ 1.41
CLN3-230ENST00000568076 AIDAQ96BJ3 306 aa23.85■■□□□ 1.41
CLN3-230ENST00000568076 HPS5Q9UPZ3 1129 aa23.85■■□□□ 1.41
CLN3-230ENST00000568076 GIMAP6Q6P9H5 292 aa23.85■■□□□ 1.41
CLN3-230ENST00000568076 FUCA2Q9BTY2 467 aa23.85■■□□□ 1.41
CLN3-230ENST00000568076 WDR19Q8NEZ3 1342 aa23.84■■□□□ 1.41
CLN3-230ENST00000568076 KLF18A0A0U1RQI7 1052 aa23.84■■□□□ 1.41
CLN3-230ENST00000568076 LIG1P18858 919 aa23.84■■□□□ 1.41
CLN3-230ENST00000568076 MAP3K12Q12852 859 aa23.84■■□□□ 1.41
CLN3-230ENST00000568076 CDC5LQ99459 802 aaKnown RBP23.84■■□□□ 1.41
CLN3-230ENST00000568076 CARMIL3Q8ND23 1372 aa23.84■■□□□ 1.41
CLN3-230ENST00000568076 ADD1P35611 737 aaKnown RBP23.83■■□□□ 1.41
CLN3-230ENST00000568076 SF3B3Q15393 1217 aaKnown RBP23.83■■□□□ 1.41
CLN3-230ENST00000568076 TBC1D9BQ66K14 1250 aa23.83■■□□□ 1.41
CLN3-230ENST00000568076 EPB41L4AQ9HCS5 686 aaPredicted RBP23.83■■□□□ 1.41
CLN3-230ENST00000568076 SCN7AQ01118 1682 aa23.83■■□□□ 1.41
CLN3-230ENST00000568076 BICDL1Q6ZP65 573 aa23.83■■□□□ 1.41
CLN3-230ENST00000568076 MBD4O95243 580 aa23.82■■□□□ 1.4
CLN3-230ENST00000568076 ALX1Q15699 326 aa23.82■■□□□ 1.4
CLN3-230ENST00000568076 CYB5R4Q7L1T6 521 aa23.82■■□□□ 1.4
CLN3-230ENST00000568076 PGBD1Q96JS3 809 aa23.82■■□□□ 1.4
CLN3-230ENST00000568076 KIF3AQ9Y496 699 aa23.82■■□□□ 1.4
CLN3-230ENST00000568076 WTIPA6NIX2 430 aaPredicted RBP23.82■■□□□ 1.4
CLN3-230ENST00000568076 GOLGA8BA8MQT2 603 aa23.82■■□□□ 1.4
CLN3-230ENST00000568076 PATL2C9JE40 543 aaKnown RBP23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms