RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ELOA3DA6NLF2 546 aaPredicted RBP7.55□□□□□ -1.2
LINC00560-201ENST00000564593 ST13P50502 369 aaKnown RBP7.55□□□□□ -1.2
LINC00560-201ENST00000564593 SPRED3Q2MJR0 410 aa7.55□□□□□ -1.2
LINC00560-201ENST00000564593 ELOA3BQ3SY89 546 aa7.55□□□□□ -1.2
LINC00560-201ENST00000564593 NT5DC4Q86YG4 428 aa7.55□□□□□ -1.2
LINC00560-201ENST00000564593 GOLGA6L1Q8N7Z2 621 aa7.55□□□□□ -1.2
LINC00560-201ENST00000564593 ELOA3Q8NG57 546 aa7.55□□□□□ -1.2
LINC00560-201ENST00000564593 POP1Q99575 1024 aaKnown RBP7.55□□□□□ -1.2
LINC00560-201ENST00000564593 SMG9Q9H0W8 520 aaKnown RBP7.55□□□□□ -1.2
LINC00560-201ENST00000564593 ZFYVE1Q9HBF4 777 aa7.55□□□□□ -1.2
LINC00560-201ENST00000564593 NAGPAQ9UK23 515 aa7.55□□□□□ -1.2
LINC00560-201ENST00000564593 A0A096LPE4 126 aa7.54□□□□□ -1.2
LINC00560-201ENST00000564593 A0A1W2PPZ6 126 aa7.54□□□□□ -1.2
LINC00560-201ENST00000564593 ALAS2P22557 587 aa7.54□□□□□ -1.2
LINC00560-201ENST00000564593 HS2ST1Q7LGA3 356 aa7.54□□□□□ -1.2
LINC00560-201ENST00000564593 MDFIQ99750 246 aa7.54□□□□□ -1.2
LINC00560-201ENST00000564593 GDF2Q9UK05 429 aaPredicted RBP7.54□□□□□ -1.2
LINC00560-201ENST00000564593 GGT7Q9UJ14 662 aa7.54□□□□□ -1.2
LINC00560-201ENST00000564593 PPM1HQ9ULR3 514 aa7.54□□□□□ -1.2
LINC00560-201ENST00000564593 ITPKAP23677 461 aa7.53□□□□□ -1.2
LINC00560-201ENST00000564593 PTPN12Q05209 780 aaKnown RBP7.53□□□□□ -1.2
LINC00560-201ENST00000564593 PSAPL1Q6NUJ1 521 aa7.53□□□□□ -1.2
LINC00560-201ENST00000564593 C1orf229Q6ZS94 237 aaPredicted RBP7.53□□□□□ -1.2
LINC00560-201ENST00000564593 LPIN3Q9BQK8 851 aa7.53□□□□□ -1.2
LINC00560-201ENST00000564593 RRAGCQ9HB90 399 aa7.53□□□□□ -1.2
LINC00560-201ENST00000564593 FRRS1LQ9P0K9 344 aa7.53□□□□□ -1.2
LINC00560-201ENST00000564593 FBXO24O75426 580 aa7.52□□□□□ -1.21
LINC00560-201ENST00000564593 RAD51AP2Q09MP3 1159 aa7.52□□□□□ -1.21
LINC00560-201ENST00000564593 CCDC85BQ15834 202 aaPredicted RBP7.52□□□□□ -1.21
LINC00560-201ENST00000564593 SLCO4C1Q6ZQN7 724 aa7.52□□□□□ -1.21
LINC00560-201ENST00000564593 BSNDQ8WZ55 320 aa7.52□□□□□ -1.21
LINC00560-201ENST00000564593 RGS9O75916 674 aaPredicted RBP7.51□□□□□ -1.21
LINC00560-201ENST00000564593 EPXP11678 715 aa7.51□□□□□ -1.21
LINC00560-201ENST00000564593 PTPRAP18433 802 aa7.51□□□□□ -1.21
LINC00560-201ENST00000564593 ZC3H6P61129 1189 aaKnown RBP7.51□□□□□ -1.21
LINC00560-201ENST00000564593 TPTE2Q6XPS3 522 aa7.51□□□□□ -1.21
LINC00560-201ENST00000564593 NUDT8Q8WV74 236 aa7.51□□□□□ -1.21
LINC00560-201ENST00000564593 EDARADDQ8WWZ3 215 aa7.51□□□□□ -1.21
LINC00560-201ENST00000564593 NOC4LQ9BVI4 516 aaKnown RBP7.51□□□□□ -1.21
LINC00560-201ENST00000564593 LACRTQ9GZZ8 138 aa7.51□□□□□ -1.21
LINC00560-201ENST00000564593 MUC3BQ9H195 1237 aa7.51□□□□□ -1.21
LINC00560-201ENST00000564593 TRIM33Q9UPN9 1127 aa7.51□□□□□ -1.21
LINC00560-201ENST00000564593 FAM177BA6PVY3 158 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 C1QTNF9BB2RNN3 333 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 ZNF394Q53GI3 561 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 GDF6Q6KF10 455 aaPredicted RBP7.5□□□□□ -1.21
LINC00560-201ENST00000564593 LINC00114Q6XXX2 140 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 USP48Q86UV5 1035 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 ANKRD24Q8TF21 1146 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 TGIF2Q9GZN2 237 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 ZNF576Q9H609 170 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 PIK3R2O00459 728 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 HOXB4P17483 251 aaPredicted RBP7.5□□□□□ -1.21
LINC00560-201ENST00000564593 ITGB7P26010 798 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 RPS26P11Q5JNZ5 115 aaPredicted RBP7.5□□□□□ -1.21
LINC00560-201ENST00000564593 ADAMTSL4Q6UY14 1074 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 SV2BQ7L1I2 683 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 TTC9Q92623 222 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 C8orf37Q96NL8 207 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 CEP44Q9C0F1 390 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 CLEC4MQ9H2X3 399 aaPredicted RBP7.5□□□□□ -1.21
LINC00560-201ENST00000564593 CCSER2Q9H7U1 834 aa7.5□□□□□ -1.21
LINC00560-201ENST00000564593 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.5□□□□□ -1.21
LINC00560-201ENST00000564593 ERMP1Q7Z2K6 904 aa7.49□□□□□ -1.21
LINC00560-201ENST00000564593 CD163Q86VB7 1156 aa7.49□□□□□ -1.21
LINC00560-201ENST00000564593 ADAM19Q9H013 955 aa7.49□□□□□ -1.21
LINC00560-201ENST00000564593 JPH1Q9HDC5 661 aaPredicted RBP7.49□□□□□ -1.21
LINC00560-201ENST00000564593 SEC31BQ9NQW1 1179 aa7.49□□□□□ -1.21
LINC00560-201ENST00000564593 DDX41Q9UJV9 622 aaKnown RBP7.49□□□□□ -1.21
LINC00560-201ENST00000564593 STARD13Q9Y3M8 1113 aa7.49□□□□□ -1.21
LINC00560-201ENST00000564593 PCDHGB7Q9Y5F8 929 aa7.49□□□□□ -1.21
LINC00560-201ENST00000564593 PCDH1Q08174 1060 aa7.48□□□□□ -1.21
LINC00560-201ENST00000564593 FAAP100Q0VG06 881 aa7.48□□□□□ -1.21
LINC00560-201ENST00000564593 NAALADL2Q58DX5 795 aa7.48□□□□□ -1.21
LINC00560-201ENST00000564593 ZNF654Q8IZM8 581 aa7.48□□□□□ -1.21
LINC00560-201ENST00000564593 RSRP1Q9BUV0 290 aa7.48□□□□□ -1.21
LINC00560-201ENST00000564593 COPRSQ9NQ92 184 aa7.48□□□□□ -1.21
LINC00560-201ENST00000564593 SH2B1Q9NRF2 756 aaPredicted RBP7.48□□□□□ -1.21
LINC00560-201ENST00000564593 GPN3Q9UHW5 284 aaPredicted RBP7.48□□□□□ -1.21
LINC00560-201ENST00000564593 SOX13Q9UN79 622 aa7.48□□□□□ -1.21
LINC00560-201ENST00000564593 GNB5O14775 395 aa7.47□□□□□ -1.21
LINC00560-201ENST00000564593 RLBP1P12271 317 aa7.47□□□□□ -1.21
LINC00560-201ENST00000564593 CDC27P30260 824 aa7.47□□□□□ -1.21
LINC00560-201ENST00000564593 ZNF157P51786 506 aaPredicted RBP7.47□□□□□ -1.21
LINC00560-201ENST00000564593 RACK1P63244 317 aaKnown RBP7.47□□□□□ -1.21
LINC00560-201ENST00000564593 MAP3K11Q16584 847 aa7.47□□□□□ -1.21
LINC00560-201ENST00000564593 VN1R5Q7Z5H4 357 aa7.47□□□□□ -1.21
LINC00560-201ENST00000564593 RELL1Q8IUW5 271 aa7.47□□□□□ -1.21
LINC00560-201ENST00000564593 CACTIN-AS1Q8N1I8 211 aa7.47□□□□□ -1.21
LINC00560-201ENST00000564593 NECAB3Q96P71 396 aaPredicted RBP7.47□□□□□ -1.21
LINC00560-201ENST00000564593 TRIM56Q9BRZ2 755 aaKnown RBP7.47□□□□□ -1.21
LINC00560-201ENST00000564593 ACBD3Q9H3P7 528 aa7.47□□□□□ -1.21
LINC00560-201ENST00000564593 SRA1Q9HD15 236 aaKnown RBP7.47□□□□□ -1.21
LINC00560-201ENST00000564593 ALBP02768 609 aa7.46□□□□□ -1.21
LINC00560-201ENST00000564593 CELA3AP09093 270 aa7.46□□□□□ -1.21
LINC00560-201ENST00000564593 CABP4P57796 275 aa7.46□□□□□ -1.21
LINC00560-201ENST00000564593 PWP1Q13610 501 aa7.46□□□□□ -1.21
LINC00560-201ENST00000564593 C20orf204Q6ZNR8 217 aa7.46□□□□□ -1.21
LINC00560-201ENST00000564593 IL22RA1Q8N6P7 574 aa7.46□□□□□ -1.21
LINC00560-201ENST00000564593 TMEM39AQ9NV64 488 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms