RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 GJA5P36382 358 aa9.43□□□□□ -0.9
VPS4A-203ENST00000564399 TAF1CQ15572 869 aaPredicted RBP9.43□□□□□ -0.9
VPS4A-203ENST00000564399 NBPF12Q5TAG4 269 aaPredicted RBP9.43□□□□□ -0.9
VPS4A-203ENST00000564399 ANKRD13AQ8IZ07 590 aa9.43□□□□□ -0.9
VPS4A-203ENST00000564399 RUNDC1Q96C34 613 aa9.43□□□□□ -0.9
VPS4A-203ENST00000564399 MPHOSPH8Q99549 860 aa9.43□□□□□ -0.9
VPS4A-203ENST00000564399 PTPN18Q99952 460 aa9.43□□□□□ -0.9
VPS4A-203ENST00000564399 ANKRD2Q9GZV1 360 aa9.43□□□□□ -0.9
VPS4A-203ENST00000564399 ELP3Q9H9T3 547 aa9.43□□□□□ -0.9
VPS4A-203ENST00000564399 SSC5DA1L4H1 1573 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 CENPFP49454 3210 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 USP2O75604 605 aaPredicted RBP9.42□□□□□ -0.9
VPS4A-203ENST00000564399 RBM5P52756 815 aaKnown RBP eCLIP9.42□□□□□ -0.9
VPS4A-203ENST00000564399 CAP1Q01518 475 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 NEXNQ0ZGT2 675 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 WDR43Q15061 677 aaKnown RBP eCLIP9.42□□□□□ -0.9
VPS4A-203ENST00000564399 CFAP100Q494V2 611 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 CHRDL2Q6WN34 429 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 CNKSR2Q8WXI2 1034 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 DPF3Q92784 378 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 OPTNQ96CV9 577 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 ZFYVE28Q9HCC9 887 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 CD209Q9NNX6 404 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 MAP3K2Q9Y2U5 619 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 PCDHAC2Q9Y5I4 1007 aa9.42□□□□□ -0.9
VPS4A-203ENST00000564399 TESPA1A2RU30 521 aaPredicted RBP9.41□□□□□ -0.9
VPS4A-203ENST00000564399 DLL1O00548 723 aa9.41□□□□□ -0.9
VPS4A-203ENST00000564399 WDHD1O75717 1129 aaPredicted RBP9.41□□□□□ -0.9
VPS4A-203ENST00000564399 RASA3Q14644 834 aa9.41□□□□□ -0.9
VPS4A-203ENST00000564399 KIF22Q14807 665 aa9.41□□□□□ -0.9
VPS4A-203ENST00000564399 NCBP3Q53F19 620 aaKnown RBP9.41□□□□□ -0.9
VPS4A-203ENST00000564399 KSR2Q6VAB6 950 aa9.41□□□□□ -0.9
VPS4A-203ENST00000564399 UBE3BQ7Z3V4 1068 aa9.41□□□□□ -0.9
VPS4A-203ENST00000564399 CERS5Q8N5B7 392 aa9.41□□□□□ -0.9
VPS4A-203ENST00000564399 MTMR14Q8NCE2 650 aa9.41□□□□□ -0.9
VPS4A-203ENST00000564399 SLC17A8Q8NDX2 589 aa9.41□□□□□ -0.9
VPS4A-203ENST00000564399 OTUD5Q96G74 571 aa9.41□□□□□ -0.9
VPS4A-203ENST00000564399 PRMT6Q96LA8 375 aaPredicted RBP9.41□□□□□ -0.9
VPS4A-203ENST00000564399 CCL15-CCL14A0A0B4J2E2 113 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 PI4KAP2A4QPH2 592 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 SPDYE2BA6NHP3 402 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 IGKV5-2P06315 115 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 SPDYE6P0CI01 402 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 ITGA6P23229 1130 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 CHRNDQ07001 517 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 TNFAIP1Q13829 316 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 RALBP1Q15311 655 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 CCL15Q16663 113 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 CWF19L2Q2TBE0 894 aaKnown RBP9.4□□□□□ -0.9
VPS4A-203ENST00000564399 CCDC30Q5VVM6 783 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 PI4KAP1Q8N8J0 262 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 SH3TC2Q8TF17 1288 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 BRI3BPQ8WY22 251 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 CHMP4AQ9BY43 222 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 JAG2Q9Y219 1238 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 OTOFQ9HC10 1997 aa9.4□□□□□ -0.9
VPS4A-203ENST00000564399 SNAP23O00161 211 aa9.39□□□□□ -0.91
VPS4A-203ENST00000564399 ECM2O94769 699 aaPredicted RBP9.39□□□□□ -0.91
VPS4A-203ENST00000564399 GTF2A2P52657 109 aa9.39□□□□□ -0.91
VPS4A-203ENST00000564399 GNAI1P63096 354 aa9.39□□□□□ -0.91
VPS4A-203ENST00000564399 ZNF804AQ7Z570 1209 aa9.39□□□□□ -0.91
VPS4A-203ENST00000564399 HELBQ8NG08 1087 aaPredicted RBP9.39□□□□□ -0.91
VPS4A-203ENST00000564399 MS4A4AQ96JQ5 239 aa9.39□□□□□ -0.91
VPS4A-203ENST00000564399 IFT57Q9NWB7 429 aa9.39□□□□□ -0.91
VPS4A-203ENST00000564399 RBM27Q9P2N5 1060 aaKnown RBP9.39□□□□□ -0.91
VPS4A-203ENST00000564399 CSADQ9Y600 493 aa9.39□□□□□ -0.91
VPS4A-203ENST00000564399 ZSWIM8A7E2V4 1837 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 AOX1Q06278 1338 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 NEURL1BA8MQ27 555 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 H7C1W4 665 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 TAF5LO75529 589 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 ZNF853P0CG23 659 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 MAP3K9P80192 1104 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 CALD1Q05682 793 aaKnown RBP9.38□□□□□ -0.91
VPS4A-203ENST00000564399 FAM43AQ8N2R8 423 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 C8orf58Q8NAV2 365 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 STK31Q9BXU1 1019 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 ARHGAP39Q9C0H5 1083 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 ADAMTS8Q9UP79 889 aa9.38□□□□□ -0.91
VPS4A-203ENST00000564399 ANKRD18BA2A2Z9 1011 aa9.37□□□□□ -0.91
VPS4A-203ENST00000564399 IL1R1P14778 569 aa9.37□□□□□ -0.91
VPS4A-203ENST00000564399 FKBP1AP62942 108 aaKnown RBP9.37□□□□□ -0.91
VPS4A-203ENST00000564399 LACTBP83111 547 aaPredicted RBP9.37□□□□□ -0.91
VPS4A-203ENST00000564399 VGLL4Q14135 290 aa9.37□□□□□ -0.91
VPS4A-203ENST00000564399 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.37□□□□□ -0.91
VPS4A-203ENST00000564399 HTATIP2Q9BUP3 242 aa9.37□□□□□ -0.91
VPS4A-203ENST00000564399 TDRD3Q9H7E2 651 aaKnown RBP9.37□□□□□ -0.91
VPS4A-203ENST00000564399 ZNF70Q9UC06 446 aaPredicted RBP9.37□□□□□ -0.91
VPS4A-203ENST00000564399 TCP10L2B9ZVM9 353 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 PLIN1O60240 522 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 TLR2O60603 784 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 GNRH1P01148 92 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 CETPP11597 493 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 TNNI2P48788 182 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 PRMT2P55345 433 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 MTFR1Q15390 333 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 SPDYE2Q495Y8 402 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 C15orf52Q6ZUT6 534 aaKnown RBP9.36□□□□□ -0.91
VPS4A-203ENST00000564399 CDAN1Q8IWY9 1227 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 NKX2-3Q8TAU0 364 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 142.4 ms