RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 C6orf229H3BNL8 230 aa16.4■□□□□ 0.22
VPS39-206ENST00000562662 CC2D2BQ6DHV5 1058 aa16.4■□□□□ 0.22
VPS39-206ENST00000562662 ZNF804AQ7Z570 1209 aa16.4■□□□□ 0.22
VPS39-206ENST00000562662 TDRD7Q8NHU6 1098 aaKnown RBP16.4■□□□□ 0.22
VPS39-206ENST00000562662 RUFY2Q8WXA3 655 aa16.4■□□□□ 0.22
VPS39-206ENST00000562662 UPF2Q9HAU5 1272 aaKnown RBP16.4■□□□□ 0.22
VPS39-206ENST00000562662 RNF113AO15541 343 aaKnown RBP16.39■□□□□ 0.21
VPS39-206ENST00000562662 REC8O95072 547 aa16.39■□□□□ 0.21
VPS39-206ENST00000562662 ZMYM1Q5SVZ6 1142 aa16.39■□□□□ 0.21
VPS39-206ENST00000562662 USP26Q9BXU7 913 aa16.39■□□□□ 0.21
VPS39-206ENST00000562662 RTFDC1Q9BY42 306 aaPredicted RBP16.39■□□□□ 0.21
VPS39-206ENST00000562662 SPON1Q9HCB6 807 aa16.39■□□□□ 0.21
VPS39-206ENST00000562662 ZNF219Q9P2Y4 722 aaPredicted RBP16.39■□□□□ 0.21
VPS39-206ENST00000562662 PSME4Q14997 1843 aa16.38■□□□□ 0.21
VPS39-206ENST00000562662 ZFYP08048 801 aaPredicted RBP16.38■□□□□ 0.21
VPS39-206ENST00000562662 IL1R1P14778 569 aa16.38■□□□□ 0.21
VPS39-206ENST00000562662 SLFNL1Q499Z3 407 aa16.38■□□□□ 0.21
VPS39-206ENST00000562662 C22orf23Q9BZE7 217 aa16.38■□□□□ 0.21
VPS39-206ENST00000562662 CD209Q9NNX6 404 aa16.38■□□□□ 0.21
VPS39-206ENST00000562662 PIM2Q9P1W9 311 aa16.38■□□□□ 0.21
VPS39-206ENST00000562662 SCN9AQ15858 1988 aa16.38■□□□□ 0.21
VPS39-206ENST00000562662 EPB41L2O43491 1005 aaKnown RBP16.37■□□□□ 0.21
VPS39-206ENST00000562662 C21orf2O43822 256 aa16.37■□□□□ 0.21
VPS39-206ENST00000562662 ADD2P35612 726 aa16.37■□□□□ 0.21
VPS39-206ENST00000562662 LRRFIP1Q32MZ4 808 aaKnown RBP16.37■□□□□ 0.21
VPS39-206ENST00000562662 ZSCAN25Q6NSZ9 544 aa16.37■□□□□ 0.21
VPS39-206ENST00000562662 ZNF589Q86UQ0 364 aaPredicted RBP16.37■□□□□ 0.21
VPS39-206ENST00000562662 SEC62Q99442 399 aaKnown RBP16.37■□□□□ 0.21
VPS39-206ENST00000562662 EYA3Q99504 573 aa16.37■□□□□ 0.21
VPS39-206ENST00000562662 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.37■□□□□ 0.21
VPS39-206ENST00000562662 LSG1Q9H089 658 aaKnown RBP16.37■□□□□ 0.21
VPS39-206ENST00000562662 HELLSQ9NRZ9 838 aa16.37■□□□□ 0.21
VPS39-206ENST00000562662 WWC3Q9ULE0 1092 aa16.37■□□□□ 0.21
VPS39-206ENST00000562662 RIMBP2O15034 1052 aa16.36■□□□□ 0.21
VPS39-206ENST00000562662 FRAT2O75474 233 aaPredicted RBP16.36■□□□□ 0.21
VPS39-206ENST00000562662 IDH1O75874 414 aaKnown RBP16.36■□□□□ 0.21
VPS39-206ENST00000562662 RBM25P49756 843 aaKnown RBP16.36■□□□□ 0.21
VPS39-206ENST00000562662 WASHC4Q2M389 1173 aa16.36■□□□□ 0.21
VPS39-206ENST00000562662 MCMDC2Q4G0Z9 681 aa16.36■□□□□ 0.21
VPS39-206ENST00000562662 GRIPAP1Q4V328 841 aa16.36■□□□□ 0.21
VPS39-206ENST00000562662 CCDC93Q567U6 631 aa16.36■□□□□ 0.21
VPS39-206ENST00000562662 ANO2Q9NQ90 1003 aa16.36■□□□□ 0.21
VPS39-206ENST00000562662 PPP1R1BQ9UD71 204 aaPredicted RBP16.36■□□□□ 0.21
VPS39-206ENST00000562662 TCRBV5S4A2TA0A5A2 114 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 PDE6AP16499 860 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 MAP3K12Q12852 859 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 CHAF1AQ13111 956 aaPredicted RBP16.35■□□□□ 0.21
VPS39-206ENST00000562662 UBE3CQ15386 1083 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 KLHL34Q8N239 644 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 APPBP2Q92624 585 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 OSBP2Q969R2 916 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 ZC3H12CQ9C0D7 883 aaKnown RBP16.35■□□□□ 0.21
VPS39-206ENST00000562662 COA1Q9GZY4 146 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 MAST3O60307 1309 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 SALL1Q9NSC2 1324 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 MYH2Q9UKX2 1941 aa16.35■□□□□ 0.21
VPS39-206ENST00000562662 M0R2C6 588 aa16.34■□□□□ 0.21
VPS39-206ENST00000562662 PTH1RQ03431 593 aa16.34■□□□□ 0.21
VPS39-206ENST00000562662 DALRD3Q5D0E6 543 aaKnown RBP16.34■□□□□ 0.21
VPS39-206ENST00000562662 SLC9C2Q5TAH2 1124 aa16.34■□□□□ 0.21
VPS39-206ENST00000562662 CCDC129Q6ZRS4 1044 aa16.34■□□□□ 0.21
VPS39-206ENST00000562662 PSMD1Q99460 953 aa16.34■□□□□ 0.21
VPS39-206ENST00000562662 CCDC171Q6TFL3 1326 aa16.34■□□□□ 0.21
VPS39-206ENST00000562662 ZNF532Q9HCE3 1301 aa16.34■□□□□ 0.21
VPS39-206ENST00000562662 SOGA3Q5TF21 947 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 RTKN2Q8IZC4 609 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 MAGEB6Q8N7X4 407 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 SUPT20HQ8NEM7 779 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 NLGN2Q8NFZ4 835 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 WDR66Q8TBY9 1149 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 PUS7LQ9H0K6 701 aaKnown RBP16.33■□□□□ 0.2
VPS39-206ENST00000562662 LRP2BPQ9P2M1 347 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 ABCF2Q9UG63 623 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 JAG2Q9Y219 1238 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 FAM205AQ6ZU69 1335 aa16.33■□□□□ 0.2
VPS39-206ENST00000562662 KIAA2012Q0VF49 1180 aa16.32■□□□□ 0.2
VPS39-206ENST00000562662 DOK7Q18PE1 504 aa16.32■□□□□ 0.2
VPS39-206ENST00000562662 KIAA1211Q6ZU35 1233 aa16.32■□□□□ 0.2
VPS39-206ENST00000562662 ZNF384Q8TF68 577 aa16.32■□□□□ 0.2
VPS39-206ENST00000562662 RAI14Q9P0K7 980 aa16.32■□□□□ 0.2
VPS39-206ENST00000562662 GOLGB1Q14789 3259 aaKnown RBP16.32■□□□□ 0.2
VPS39-206ENST00000562662 IGSF3O75054 1194 aa16.31■□□□□ 0.2
VPS39-206ENST00000562662 PRDX5P30044 214 aa16.31■□□□□ 0.2
VPS39-206ENST00000562662 ERICH6Q7L0X2 663 aa16.31■□□□□ 0.2
VPS39-206ENST00000562662 ZGPATQ8N5A5 531 aaKnown RBP16.31■□□□□ 0.2
VPS39-206ENST00000562662 MAP4K1Q92918 833 aa16.31■□□□□ 0.2
VPS39-206ENST00000562662 NSUN4Q96CB9 384 aaKnown RBP16.31■□□□□ 0.2
VPS39-206ENST00000562662 KIF2CQ99661 725 aa16.31■□□□□ 0.2
VPS39-206ENST00000562662 LAMA4Q16363 1823 aa16.31■□□□□ 0.2
VPS39-206ENST00000562662 COL4A5P29400 1685 aa16.3■□□□□ 0.2
VPS39-206ENST00000562662 HSPA4P34932 840 aa16.3■□□□□ 0.2
VPS39-206ENST00000562662 AOC3Q16853 763 aa16.3■□□□□ 0.2
VPS39-206ENST00000562662 SPTY2D1Q68D10 685 aaPredicted RBP16.3■□□□□ 0.2
VPS39-206ENST00000562662 PODNQ7Z5L7 613 aa16.3■□□□□ 0.2
VPS39-206ENST00000562662 DBNDD1Q9H9R9 158 aa16.3■□□□□ 0.2
VPS39-206ENST00000562662 CDK5RAP2Q96SN8 1893 aa16.3■□□□□ 0.2
VPS39-206ENST00000562662 GPAA1O43292 621 aa16.29■□□□□ 0.2
VPS39-206ENST00000562662 ECE2O60344 883 aa16.29■□□□□ 0.2
VPS39-206ENST00000562662 MCCP23508 829 aa16.29■□□□□ 0.2
VPS39-206ENST00000562662 MECOMQ03112 1051 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms