RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 RARAP10276 462 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 GRIN2CQ14957 1233 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 FAM182BQ5T319 152 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 SNX29Q8TEQ0 813 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 SLC30A3Q99726 388 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 EFCC1Q9HA90 598 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 ABI2Q9NYB9 513 aaPredicted RBP8.78□□□□□ -1
LRRC28-220ENST00000561253 TMEM63CQ9P1W3 806 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 HCN2Q9UL51 889 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 PRR12Q9ULL5 1215 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 E9PCH4 1651 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 SETD1BQ9UPS6 1966 aaKnown RBP8.77□□□□□ -1
LRRC28-220ENST00000561253 TNRQ92752 1358 aa8.77□□□□□ -1.01
LRRC28-220ENST00000561253 PHACTR2O75167 634 aa8.77□□□□□ -1.01
LRRC28-220ENST00000561253 TARSP26639 723 aaKnown RBP8.77□□□□□ -1.01
LRRC28-220ENST00000561253 CTBSQ01459 385 aa8.77□□□□□ -1.01
LRRC28-220ENST00000561253 ATP2B2Q01814 1243 aa8.77□□□□□ -1.01
LRRC28-220ENST00000561253 ORC1Q13415 861 aa8.77□□□□□ -1.01
LRRC28-220ENST00000561253 ZNF326Q5BKZ1 582 aaKnown RBP8.77□□□□□ -1.01
LRRC28-220ENST00000561253 GIPC2Q8TF65 315 aa8.77□□□□□ -1.01
LRRC28-220ENST00000561253 SLC16A10Q8TF71 515 aa8.77□□□□□ -1.01
LRRC28-220ENST00000561253 BHMTQ93088 406 aa8.77□□□□□ -1.01
LRRC28-220ENST00000561253 FOXD3Q9UJU5 478 aaPredicted RBP8.77□□□□□ -1.01
LRRC28-220ENST00000561253 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.77□□□□□ -1.01
LRRC28-220ENST00000561253 PREX1Q8TCU6 1659 aa8.76□□□□□ -1.01
LRRC28-220ENST00000561253 PNMA6FA0A0J9YX94 578 aa8.76□□□□□ -1.01
LRRC28-220ENST00000561253 BMP4P12644 408 aa8.76□□□□□ -1.01
LRRC28-220ENST00000561253 NFKB1P19838 968 aa8.76□□□□□ -1.01
LRRC28-220ENST00000561253 MX2P20592 715 aa8.76□□□□□ -1.01
LRRC28-220ENST00000561253 FBXO33Q7Z6M2 555 aa8.76□□□□□ -1.01
LRRC28-220ENST00000561253 RAB44Q7Z6P3 723 aaPredicted RBP8.76□□□□□ -1.01
LRRC28-220ENST00000561253 MPHOSPH9Q99550 1183 aa8.76□□□□□ -1.01
LRRC28-220ENST00000561253 RBM47A0AV96 593 aaKnown RBP8.75□□□□□ -1.01
LRRC28-220ENST00000561253 TERTO14746 1132 aaKnown RBP8.75□□□□□ -1.01
LRRC28-220ENST00000561253 CPNE3O75131 537 aaKnown RBP8.75□□□□□ -1.01
LRRC28-220ENST00000561253 FGD1P98174 961 aa8.75□□□□□ -1.01
LRRC28-220ENST00000561253 CSRNP1Q96S65 589 aa8.75□□□□□ -1.01
LRRC28-220ENST00000561253 DNAJC25Q9H1X3 360 aa8.75□□□□□ -1.01
LRRC28-220ENST00000561253 PIK3C2BO00750 1634 aa8.75□□□□□ -1.01
LRRC28-220ENST00000561253 NLRP1Q9C000 1473 aa8.75□□□□□ -1.01
LRRC28-220ENST00000561253 MYO3AQ8NEV4 1616 aa8.74□□□□□ -1.01
LRRC28-220ENST00000561253 EIF1AYO14602 144 aaKnown RBP8.74□□□□□ -1.01
LRRC28-220ENST00000561253 LDHBP07195 334 aaKnown RBP8.74□□□□□ -1.01
LRRC28-220ENST00000561253 RBM25P49756 843 aaKnown RBP8.74□□□□□ -1.01
LRRC28-220ENST00000561253 IDI1Q13907 227 aa8.74□□□□□ -1.01
LRRC28-220ENST00000561253 ENOX2Q16206 610 aaKnown RBP8.74□□□□□ -1.01
LRRC28-220ENST00000561253 PMEPA1Q969W9 287 aa8.74□□□□□ -1.01
LRRC28-220ENST00000561253 ZFATQ9P243 1243 aa8.74□□□□□ -1.01
LRRC28-220ENST00000561253 NSFL1CQ9UNZ2 370 aaKnown RBP8.74□□□□□ -1.01
LRRC28-220ENST00000561253 A2ML1A8K2U0 1454 aa8.74□□□□□ -1.01
LRRC28-220ENST00000561253 TRPM2O94759 1503 aa8.74□□□□□ -1.01
LRRC28-220ENST00000561253 ANKRD30BQ9BXX2 1392 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 UGGT1Q9NYU2 1555 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 ZNF142P52746 1687 aaPredicted RBP8.73□□□□□ -1.01
LRRC28-220ENST00000561253 PHF20L1A8MW92 1017 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 MMP20O60882 483 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 PSAPP07602 524 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 ZNF16P17020 682 aaPredicted RBP8.73□□□□□ -1.01
LRRC28-220ENST00000561253 CES1P23141 567 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 NPM2Q86SE8 214 aaKnown RBP8.73□□□□□ -1.01
LRRC28-220ENST00000561253 GPR161Q8N6U8 529 aaKnown RBP8.73□□□□□ -1.01
LRRC28-220ENST00000561253 C1orf127Q8N9H9 656 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 BCL11AQ9H165 835 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 ZFYVE28Q9HCC9 887 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 CNTN3Q9P232 1028 aa8.73□□□□□ -1.01
LRRC28-220ENST00000561253 CEP170BQ9Y4F5 1589 aaPredicted RBP8.73□□□□□ -1.01
LRRC28-220ENST00000561253 UHRF1BP1Q6BDS2 1440 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 MAP3K6O95382 1288 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 VSIG8P0DPA2 414 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 TAGLNQ01995 201 aaKnown RBP8.72□□□□□ -1.01
LRRC28-220ENST00000561253 GAS6Q14393 721 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 ALG1LQ6GMV1 187 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 OR13H1Q8NG92 308 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 ZNF428Q96B54 188 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 PCGF6Q9BYE7 350 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 MBIPQ9NS73 344 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 SLC52A1Q9NWF4 448 aa8.72□□□□□ -1.01
LRRC28-220ENST00000561253 DHX57Q6P158 1386 aaKnown RBP8.72□□□□□ -1.01
LRRC28-220ENST00000561253 ARHGAP23Q9P227 1491 aa8.71□□□□□ -1.01
LRRC28-220ENST00000561253 C2CD2LO14523 706 aa8.71□□□□□ -1.02
LRRC28-220ENST00000561253 PRPF40AO75400 957 aaKnown RBP8.71□□□□□ -1.02
LRRC28-220ENST00000561253 MAP2K3P46734 347 aa8.71□□□□□ -1.02
LRRC28-220ENST00000561253 ZNF468Q5VIY5 522 aaPredicted RBP8.71□□□□□ -1.02
LRRC28-220ENST00000561253 SYT9Q86SS6 491 aa8.71□□□□□ -1.02
LRRC28-220ENST00000561253 IRF7Q92985 503 aa8.71□□□□□ -1.02
LRRC28-220ENST00000561253 COL25A1Q9BXS0 654 aaPredicted RBP8.71□□□□□ -1.02
LRRC28-220ENST00000561253 CHRDQ9H2X0 955 aa8.71□□□□□ -1.02
LRRC28-220ENST00000561253 IGFLR1Q9H665 355 aa8.71□□□□□ -1.02
LRRC28-220ENST00000561253 TLR7Q9NYK1 1049 aaKnown RBP8.71□□□□□ -1.02
LRRC28-220ENST00000561253 WWC3Q9ULE0 1092 aa8.71□□□□□ -1.02
LRRC28-220ENST00000561253 EREGO14944 169 aa8.7□□□□□ -1.02
LRRC28-220ENST00000561253 PLAURQ03405 335 aa8.7□□□□□ -1.02
LRRC28-220ENST00000561253 USPL1Q5W0Q7 1092 aa8.7□□□□□ -1.02
LRRC28-220ENST00000561253 DHX32Q7L7V1 743 aaKnown RBP8.7□□□□□ -1.02
LRRC28-220ENST00000561253 FBF1Q8TES7 1133 aa8.7□□□□□ -1.02
LRRC28-220ENST00000561253 SPHKAPQ2M3C7 1700 aa8.7□□□□□ -1.02
LRRC28-220ENST00000561253 SPATA31E1Q6ZUB1 1445 aa8.7□□□□□ -1.02
LRRC28-220ENST00000561253 CFAP65Q6ZU64 1925 aaKnown RBP8.7□□□□□ -1.02
LRRC28-220ENST00000561253 CLTCL1P53675 1640 aa8.69□□□□□ -1.02
LRRC28-220ENST00000561253 KDM5AP29375 1690 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms