RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 N4BP2Q86UW6 1770 aaPredicted RBP6.64□□□□□ -1.35
SPG11-220ENST00000559933 PI4KAP2A4QPH2 592 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 CAPN5O15484 640 aaPredicted RBP6.63□□□□□ -1.35
SPG11-220ENST00000559933 COL15A1P39059 1388 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 ARID5BQ14865 1188 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 SLC4A10Q6U841 1118 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 UBR3Q6ZT12 1888 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 PI4KAP1Q8N8J0 262 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 ARXQ96QS3 562 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 CCDC87Q9NVE4 849 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 DBF4Q9UBU7 674 aaPredicted RBP6.63□□□□□ -1.35
SPG11-220ENST00000559933 SRP68Q9UHB9 627 aaKnown RBP6.63□□□□□ -1.35
SPG11-220ENST00000559933 TBC1D2BQ9UPU7 963 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 GTF3C3Q9Y5Q9 886 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 TLL2Q9Y6L7 1015 aa6.63□□□□□ -1.35
SPG11-220ENST00000559933 AFDNP55196 1824 aaKnown RBP6.62□□□□□ -1.35
SPG11-220ENST00000559933 SOS1Q07889 1333 aaPredicted RBP6.62□□□□□ -1.35
SPG11-220ENST00000559933 CNTNAP4Q9C0A0 1308 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 STARD3NLO95772 234 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 HLFQ16534 295 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 CWF19L2Q2TBE0 894 aaKnown RBP6.62□□□□□ -1.35
SPG11-220ENST00000559933 ITPRIPQ8IWB1 547 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 FTSJ3Q8IY81 847 aaKnown RBP6.62□□□□□ -1.35
SPG11-220ENST00000559933 DZIP1LQ8IYY4 767 aaKnown RBP6.62□□□□□ -1.35
SPG11-220ENST00000559933 MPNDQ8N594 471 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 JARID2Q92833 1246 aaPredicted RBP6.62□□□□□ -1.35
SPG11-220ENST00000559933 FOXJ1Q92949 421 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 KIFC2Q96AC6 838 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 ZNF775Q96BV0 537 aaPredicted RBP6.62□□□□□ -1.35
SPG11-220ENST00000559933 CAMKK2Q96RR4 588 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 MYD88Q99836 296 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 C1orf115Q9H7X2 142 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 MAP3K2Q9Y2U5 619 aa6.62□□□□□ -1.35
SPG11-220ENST00000559933 PTPRCP08575 1304 aa6.61□□□□□ -1.35
SPG11-220ENST00000559933 ATP5J2-PTCD1G3V325 749 aa6.61□□□□□ -1.35
SPG11-220ENST00000559933 AP1G2O75843 785 aa6.61□□□□□ -1.35
SPG11-220ENST00000559933 BRPF1P55201 1214 aaPredicted RBP6.61□□□□□ -1.35
SPG11-220ENST00000559933 CTDSPL2Q05D32 466 aa6.61□□□□□ -1.35
SPG11-220ENST00000559933 NNTQ13423 1086 aa6.61□□□□□ -1.35
SPG11-220ENST00000559933 MVPQ14764 893 aaKnown RBP6.61□□□□□ -1.35
SPG11-220ENST00000559933 DZIP3Q86Y13 1208 aaKnown RBP6.61□□□□□ -1.35
SPG11-220ENST00000559933 PROCA1Q8NCQ7 364 aaPredicted RBP6.61□□□□□ -1.35
SPG11-220ENST00000559933 PNMA1Q8ND90 353 aa6.61□□□□□ -1.35
SPG11-220ENST00000559933 GPKOWQ92917 476 aaPredicted RBP eCLIP6.61□□□□□ -1.35
SPG11-220ENST00000559933 PCMTD1Q96MG8 357 aaPredicted RBP6.61□□□□□ -1.35
SPG11-220ENST00000559933 API5Q9BZZ5 524 aaKnown RBP6.61□□□□□ -1.35
SPG11-220ENST00000559933 HYPKQ9NX55 129 aa6.61□□□□□ -1.35
SPG11-220ENST00000559933 ANKRD36CQ5JPF3 1778 aa6.61□□□□□ -1.35
SPG11-220ENST00000559933 CACNA1FO60840 1977 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 PXDNLA1KZ92 1463 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 ERBB4Q15303 1308 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 MAGEB6P1A0A0J9YX57 407 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 FAM177BA6PVY3 158 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 PLSCR1O15162 318 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 CAMTA2O94983 1202 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 IGKV5-2P06315 115 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 NEFLP07196 543 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 GPTP24298 496 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 EIF5P55010 431 aaKnown RBP6.6□□□□□ -1.35
SPG11-220ENST00000559933 SLC27A3Q5K4L6 730 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 BEND3Q5T5X7 828 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 USPL1Q5W0Q7 1092 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 KSR2Q6VAB6 950 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 KIF6Q6ZMV9 814 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.6□□□□□ -1.35
SPG11-220ENST00000559933 DNAAF4Q8WXU2 420 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 MEIS3Q99687 375 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 TEX13AQ9BXU3 409 aaPredicted RBP6.6□□□□□ -1.35
SPG11-220ENST00000559933 PDGFDQ9GZP0 370 aaPredicted RBP6.6□□□□□ -1.35
SPG11-220ENST00000559933 NUP98P52948 1817 aa6.6□□□□□ -1.35
SPG11-220ENST00000559933 MAP3K15Q6ZN16 1313 aa6.59□□□□□ -1.35
SPG11-220ENST00000559933 UBN2Q6ZU65 1347 aa6.59□□□□□ -1.35
SPG11-220ENST00000559933 IPO8O15397 1037 aaKnown RBP6.59□□□□□ -1.35
SPG11-220ENST00000559933 ADH1CP00326 375 aa6.59□□□□□ -1.35
SPG11-220ENST00000559933 IL6STP40189 918 aaPredicted RBP6.59□□□□□ -1.35
SPG11-220ENST00000559933 BAG6P46379 1132 aa6.59□□□□□ -1.35
SPG11-220ENST00000559933 SF3B2Q13435 895 aaKnown RBP6.59□□□□□ -1.35
SPG11-220ENST00000559933 PPP2R2DQ66LE6 453 aa6.59□□□□□ -1.35
SPG11-220ENST00000559933 MSL1Q68DK7 614 aa6.59□□□□□ -1.35
SPG11-220ENST00000559933 BICDL1Q6ZP65 573 aa6.59□□□□□ -1.35
SPG11-220ENST00000559933 PLBD2Q8NHP8 589 aa6.59□□□□□ -1.35
SPG11-220ENST00000559933 ARHGAP45Q92619 1136 aa6.59□□□□□ -1.35
SPG11-220ENST00000559933 ATP10DQ9P241 1426 aa6.59□□□□□ -1.36
SPG11-220ENST00000559933 PNPLA7Q6ZV29 1317 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 NEURL1BA8MQ27 555 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 RPS6KA4O75676 772 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 WDR4P57081 412 aaKnown RBP6.58□□□□□ -1.36
SPG11-220ENST00000559933 NR5A1Q13285 461 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 PDE3AQ14432 1141 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 INTS3Q68E01 1043 aaKnown RBP6.58□□□□□ -1.36
SPG11-220ENST00000559933 B4GALNT3Q6L9W6 998 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 COL23A1Q86Y22 540 aaPredicted RBP6.58□□□□□ -1.36
SPG11-220ENST00000559933 SYNE4Q8N205 404 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 TRIM47Q96LD4 638 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 CDK15Q96Q40 435 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 METTL22Q9BUU2 404 aaPredicted RBP6.58□□□□□ -1.36
SPG11-220ENST00000559933 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.58□□□□□ -1.36
SPG11-220ENST00000559933 TFCP2L1Q9NZI6 479 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 RTCBQ9Y3I0 505 aaKnown RBP6.58□□□□□ -1.36
SPG11-220ENST00000559933 COL24A1Q17RW2 1714 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms