RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 FAM84BQ96KN1 310 aaPredicted RBP22.34■■□□□ 1.17
HDDC3-205ENST00000559898 FZD1Q9UP38 647 aa22.34■■□□□ 1.17
HDDC3-205ENST00000559898 ECM29Q5VYK3 1845 aa22.34■■□□□ 1.17
HDDC3-205ENST00000559898 RFX5P48382 616 aaPredicted RBP22.33■■□□□ 1.17
HDDC3-205ENST00000559898 GRIK5Q16478 980 aa22.33■■□□□ 1.17
HDDC3-205ENST00000559898 ZNF804AQ7Z570 1209 aa22.33■■□□□ 1.17
HDDC3-205ENST00000559898 OGFOD1Q8N543 542 aa22.33■■□□□ 1.17
HDDC3-205ENST00000559898 IQSEC3Q9UPP2 1182 aaPredicted RBP22.33■■□□□ 1.17
HDDC3-205ENST00000559898 PAPPA2Q9BXP8 1791 aa22.33■■□□□ 1.16
HDDC3-205ENST00000559898 VGLL2Q8N8G2 317 aa22.32■■□□□ 1.16
HDDC3-205ENST00000559898 CASP8AP2Q9UKL3 1982 aa22.32■■□□□ 1.16
HDDC3-205ENST00000559898 UBE2Q2LH0YL09 131 aa22.31■■□□□ 1.16
HDDC3-205ENST00000559898 ZNF157P51786 506 aaPredicted RBP22.31■■□□□ 1.16
HDDC3-205ENST00000559898 RARSP54136 660 aaKnown RBP22.31■■□□□ 1.16
HDDC3-205ENST00000559898 UBE4AQ14139 1066 aa22.31■■□□□ 1.16
HDDC3-205ENST00000559898 TDRD7Q8NHU6 1098 aaKnown RBP22.31■■□□□ 1.16
HDDC3-205ENST00000559898 ARAP2Q8WZ64 1704 aa22.31■■□□□ 1.16
HDDC3-205ENST00000559898 KIF23Q02241 960 aaPredicted RBP22.3■■□□□ 1.16
HDDC3-205ENST00000559898 CLRN2A0PK11 232 aa22.29■■□□□ 1.16
HDDC3-205ENST00000559898 SLC10A3P09131 477 aa22.29■■□□□ 1.16
HDDC3-205ENST00000559898 HIBADHP31937 336 aaKnown RBP22.29■■□□□ 1.16
HDDC3-205ENST00000559898 BRPF1P55201 1214 aaPredicted RBP22.29■■□□□ 1.16
HDDC3-205ENST00000559898 PRKG1Q13976 671 aa22.29■■□□□ 1.16
HDDC3-205ENST00000559898 CFAP100Q494V2 611 aa22.29■■□□□ 1.16
HDDC3-205ENST00000559898 METTL24Q5JXM2 366 aa22.29■■□□□ 1.16
HDDC3-205ENST00000559898 RASAL3Q86YV0 1011 aa22.29■■□□□ 1.16
HDDC3-205ENST00000559898 PRMT6Q96LA8 375 aaPredicted RBP22.29■■□□□ 1.16
HDDC3-205ENST00000559898 NOGQ13253 232 aa22.28■■□□□ 1.16
HDDC3-205ENST00000559898 HDAC9Q9UKV0 1011 aa22.28■■□□□ 1.16
HDDC3-205ENST00000559898 FAM205AQ6ZU69 1335 aa22.28■■□□□ 1.16
HDDC3-205ENST00000559898 MROH5Q6ZUA9 1318 aa22.28■■□□□ 1.16
HDDC3-205ENST00000559898 SSC5DA1L4H1 1573 aa22.27■■□□□ 1.16
HDDC3-205ENST00000559898 PTPN12Q05209 780 aaKnown RBP22.27■■□□□ 1.16
HDDC3-205ENST00000559898 DLGAP5Q15398 846 aa22.27■■□□□ 1.16
HDDC3-205ENST00000559898 FBXO33Q7Z6M2 555 aa22.27■■□□□ 1.16
HDDC3-205ENST00000559898 MEIS3Q99687 375 aa22.27■■□□□ 1.16
HDDC3-205ENST00000559898 BEGAINQ9BUH8 593 aa22.27■■□□□ 1.16
HDDC3-205ENST00000559898 BCAR3O75815 825 aa22.26■■□□□ 1.15
HDDC3-205ENST00000559898 PDE8BO95263 885 aa22.26■■□□□ 1.15
HDDC3-205ENST00000559898 BCAMP50895 628 aa22.26■■□□□ 1.15
HDDC3-205ENST00000559898 MFSD14BQ5SR56 506 aa22.26■■□□□ 1.15
HDDC3-205ENST00000559898 ATG9AQ7Z3C6 839 aa22.26■■□□□ 1.15
HDDC3-205ENST00000559898 LRRFIP2Q9Y608 721 aaKnown RBP22.26■■□□□ 1.15
HDDC3-205ENST00000559898 SPDYE2BA6NHP3 402 aa22.25■■□□□ 1.15
HDDC3-205ENST00000559898 CT47B1P0C2W7 299 aaPredicted RBP22.25■■□□□ 1.15
HDDC3-205ENST00000559898 SPDYE6P0CI01 402 aa22.25■■□□□ 1.15
HDDC3-205ENST00000559898 FKBP1AP62942 108 aaKnown RBP22.25■■□□□ 1.15
HDDC3-205ENST00000559898 CHAF1AQ13111 956 aaPredicted RBP22.25■■□□□ 1.15
HDDC3-205ENST00000559898 DIEXFQ68CQ4 756 aaKnown RBP22.25■■□□□ 1.15
HDDC3-205ENST00000559898 MTMR14Q8NCE2 650 aa22.25■■□□□ 1.15
HDDC3-205ENST00000559898 CSRNP1Q96S65 589 aa22.25■■□□□ 1.15
HDDC3-205ENST00000559898 SIL1Q9H173 461 aa22.25■■□□□ 1.15
HDDC3-205ENST00000559898 PA2G4Q9UQ80 394 aaKnown RBP22.25■■□□□ 1.15
HDDC3-205ENST00000559898 AKAP11Q9UKA4 1901 aa22.24■■□□□ 1.15
HDDC3-205ENST00000559898 FGFR2P21802 821 aa22.24■■□□□ 1.15
HDDC3-205ENST00000559898 CCDC102AQ96A19 550 aa22.24■■□□□ 1.15
HDDC3-205ENST00000559898 EYA2O00167 538 aa22.23■■□□□ 1.15
HDDC3-205ENST00000559898 UBTFL1P0CB47 393 aaPredicted RBP22.23■■□□□ 1.15
HDDC3-205ENST00000559898 MKRN3Q13064 507 aaKnown RBP22.23■■□□□ 1.15
HDDC3-205ENST00000559898 TTLL12Q14166 644 aaPredicted RBP22.23■■□□□ 1.15
HDDC3-205ENST00000559898 APOBEC3FQ8IUX4 373 aaKnown RBP22.23■■□□□ 1.15
HDDC3-205ENST00000559898 CDAN1Q8IWY9 1227 aa22.23■■□□□ 1.15
HDDC3-205ENST00000559898 API5Q9BZZ5 524 aaKnown RBP22.23■■□□□ 1.15
HDDC3-205ENST00000559898 DEFB129Q9H1M3 183 aa22.23■■□□□ 1.15
HDDC3-205ENST00000559898 COL1A1P02452 1464 aaPredicted RBP22.22■■□□□ 1.15
HDDC3-205ENST00000559898 MYH13Q9UKX3 1938 aa22.22■■□□□ 1.15
HDDC3-205ENST00000559898 RBM5P52756 815 aaKnown RBP eCLIP22.22■■□□□ 1.15
HDDC3-205ENST00000559898 VEZTQ9HBM0 779 aa22.22■■□□□ 1.15
HDDC3-205ENST00000559898 RNF186Q9NXI6 227 aa22.22■■□□□ 1.15
HDDC3-205ENST00000559898 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.22■■□□□ 1.15
HDDC3-205ENST00000559898 TTF2Q9UNY4 1162 aaKnown RBP22.22■■□□□ 1.15
HDDC3-205ENST00000559898 FKBP1BP68106 108 aa22.21■■□□□ 1.15
HDDC3-205ENST00000559898 TDRD3Q9H7E2 651 aaKnown RBP22.21■■□□□ 1.15
HDDC3-205ENST00000559898 TRPA1O75762 1119 aa22.2■■□□□ 1.14
HDDC3-205ENST00000559898 MMP14P50281 582 aa22.2■■□□□ 1.14
HDDC3-205ENST00000559898 NBPF12Q5TAG4 269 aaPredicted RBP22.2■■□□□ 1.14
HDDC3-205ENST00000559898 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.2■■□□□ 1.14
HDDC3-205ENST00000559898 TRIM27P14373 513 aa22.19■■□□□ 1.14
HDDC3-205ENST00000559898 HNRNPUQ00839 825 aaKnown RBP eCLIP22.19■■□□□ 1.14
HDDC3-205ENST00000559898 INTS3Q68E01 1043 aaKnown RBP22.19■■□□□ 1.14
HDDC3-205ENST00000559898 ANGEL1Q9UNK9 670 aaKnown RBP22.19■■□□□ 1.14
HDDC3-205ENST00000559898 OTOFQ9HC10 1997 aa22.18■■□□□ 1.14
HDDC3-205ENST00000559898 CRKP46108 304 aa22.18■■□□□ 1.14
HDDC3-205ENST00000559898 PUM3Q15397 648 aaKnown RBP22.18■■□□□ 1.14
HDDC3-205ENST00000559898 VPS37DQ86XT2 251 aa22.18■■□□□ 1.14
HDDC3-205ENST00000559898 FRAT1Q92837 279 aaPredicted RBP22.18■■□□□ 1.14
HDDC3-205ENST00000559898 CLUAP1Q96AJ1 413 aa22.18■■□□□ 1.14
HDDC3-205ENST00000559898 ABHD8Q96I13 439 aa22.18■■□□□ 1.14
HDDC3-205ENST00000559898 CLMNQ96JQ2 1002 aa22.18■■□□□ 1.14
HDDC3-205ENST00000559898 ZNF70Q9UC06 446 aaPredicted RBP22.18■■□□□ 1.14
HDDC3-205ENST00000559898 LDLRAD1Q5T700 205 aa22.17■■□□□ 1.14
HDDC3-205ENST00000559898 DZIP1LQ8IYY4 767 aaKnown RBP22.17■■□□□ 1.14
HDDC3-205ENST00000559898 CA12O43570 354 aa22.16■■□□□ 1.14
HDDC3-205ENST00000559898 CACNB3P54284 484 aa22.16■■□□□ 1.14
HDDC3-205ENST00000559898 RASA3Q14644 834 aa22.16■■□□□ 1.14
HDDC3-205ENST00000559898 SPDYE2Q495Y8 402 aa22.16■■□□□ 1.14
HDDC3-205ENST00000559898 CAVIN4Q5BKX8 364 aa22.16■■□□□ 1.14
HDDC3-205ENST00000559898 ARHGAP45Q92619 1136 aa22.16■■□□□ 1.14
HDDC3-205ENST00000559898 KIF16BQ96L93 1317 aa22.15■■□□□ 1.14
HDDC3-205ENST00000559898 TCP10L2B9ZVM9 353 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 864 ms