RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 LDHAL6AQ6ZMR3 332 aa11.64□□□□□ -0.55
HDDC3-204ENST00000559834 HELBQ8NG08 1087 aaPredicted RBP11.64□□□□□ -0.55
HDDC3-204ENST00000559834 HPS5Q9UPZ3 1129 aa11.64□□□□□ -0.55
HDDC3-204ENST00000559834 SALL2Q9Y467 1007 aaPredicted RBP11.64□□□□□ -0.55
HDDC3-204ENST00000559834 MYH3P11055 1940 aa11.64□□□□□ -0.55
HDDC3-204ENST00000559834 MANSC4A6NHS7 340 aaPredicted RBP11.63□□□□□ -0.55
HDDC3-204ENST00000559834 ANP32CO43423 234 aa11.63□□□□□ -0.55
HDDC3-204ENST00000559834 FKTNO75072 461 aa11.63□□□□□ -0.55
HDDC3-204ENST00000559834 IL1R1P14778 569 aa11.63□□□□□ -0.55
HDDC3-204ENST00000559834 BEND3Q5T5X7 828 aa11.63□□□□□ -0.55
HDDC3-204ENST00000559834 SPRYD7Q5W111 196 aa11.63□□□□□ -0.55
HDDC3-204ENST00000559834 LMBR1LQ6UX01 489 aa11.63□□□□□ -0.55
HDDC3-204ENST00000559834 CFHR5Q9BXR6 569 aa11.63□□□□□ -0.55
HDDC3-204ENST00000559834 C9orf78Q9NZ63 289 aaPredicted RBP11.63□□□□□ -0.55
HDDC3-204ENST00000559834 F6X3S4 739 aa11.62□□□□□ -0.55
HDDC3-204ENST00000559834 F8W031 263 aaPredicted RBP11.62□□□□□ -0.55
HDDC3-204ENST00000559834 GRM8O00222 908 aa11.62□□□□□ -0.55
HDDC3-204ENST00000559834 PLIN1O60240 522 aa11.62□□□□□ -0.55
HDDC3-204ENST00000559834 RBM5P52756 815 aaKnown RBP eCLIP11.62□□□□□ -0.55
HDDC3-204ENST00000559834 MAP3K11Q16584 847 aa11.62□□□□□ -0.55
HDDC3-204ENST00000559834 CFAP100Q494V2 611 aa11.62□□□□□ -0.55
HDDC3-204ENST00000559834 CNNM1Q9NRU3 951 aa11.62□□□□□ -0.55
HDDC3-204ENST00000559834 SNAP23O00161 211 aa11.61□□□□□ -0.55
HDDC3-204ENST00000559834 ALDH1L1O75891 902 aa11.61□□□□□ -0.55
HDDC3-204ENST00000559834 ZBTB48P10074 688 aaPredicted RBP11.61□□□□□ -0.55
HDDC3-204ENST00000559834 OTUD7BQ6GQQ9 843 aa11.61□□□□□ -0.55
HDDC3-204ENST00000559834 FBXO46Q6PJ61 603 aaPredicted RBP11.61□□□□□ -0.55
HDDC3-204ENST00000559834 CERS5Q8N5B7 392 aa11.61□□□□□ -0.55
HDDC3-204ENST00000559834 PRMT6Q96LA8 375 aaPredicted RBP11.61□□□□□ -0.55
HDDC3-204ENST00000559834 COL1A1P02452 1464 aaPredicted RBP11.61□□□□□ -0.55
HDDC3-204ENST00000559834 IRS2Q9Y4H2 1338 aa11.6□□□□□ -0.55
HDDC3-204ENST00000559834 CACNA1FO60840 1977 aa11.6□□□□□ -0.55
HDDC3-204ENST00000559834 SPDYE2BA6NHP3 402 aa11.6□□□□□ -0.55
HDDC3-204ENST00000559834 SPDYE6P0CI01 402 aa11.6□□□□□ -0.55
HDDC3-204ENST00000559834 IREB2P48200 963 aaKnown RBP11.6□□□□□ -0.55
HDDC3-204ENST00000559834 TNFAIP1Q13829 316 aa11.6□□□□□ -0.55
HDDC3-204ENST00000559834 UBE4AQ14139 1066 aa11.6□□□□□ -0.55
HDDC3-204ENST00000559834 IFNL1Q8IU54 200 aa11.6□□□□□ -0.55
HDDC3-204ENST00000559834 SRCIN1Q9C0H9 1055 aa11.6□□□□□ -0.55
HDDC3-204ENST00000559834 VEZTQ9HBM0 779 aa11.6□□□□□ -0.55
HDDC3-204ENST00000559834 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.6□□□□□ -0.55
HDDC3-204ENST00000559834 CLRN2A0PK11 232 aa11.59□□□□□ -0.55
HDDC3-204ENST00000559834 HIBADHP31937 336 aaKnown RBP11.59□□□□□ -0.55
HDDC3-204ENST00000559834 SLC4A10Q6U841 1118 aa11.59□□□□□ -0.55
HDDC3-204ENST00000559834 ANKRD13AQ8IZ07 590 aa11.59□□□□□ -0.55
HDDC3-204ENST00000559834 ZNF594Q96JF6 807 aaPredicted RBP11.59□□□□□ -0.55
HDDC3-204ENST00000559834 FAM205AQ6ZU69 1335 aa11.59□□□□□ -0.55
HDDC3-204ENST00000559834 SPEF2Q9C093 1822 aa11.58□□□□□ -0.56
HDDC3-204ENST00000559834 USP2O75604 605 aaPredicted RBP11.58□□□□□ -0.56
HDDC3-204ENST00000559834 RASA3Q14644 834 aa11.58□□□□□ -0.56
HDDC3-204ENST00000559834 EPHA10Q5JZY3 1008 aa11.58□□□□□ -0.56
HDDC3-204ENST00000559834 MFSD14BQ5SR56 506 aa11.58□□□□□ -0.56
HDDC3-204ENST00000559834 NBPF12Q5TAG4 269 aaPredicted RBP11.58□□□□□ -0.56
HDDC3-204ENST00000559834 VPS37DQ86XT2 251 aa11.58□□□□□ -0.56
HDDC3-204ENST00000559834 TDRD7Q8NHU6 1098 aaKnown RBP11.58□□□□□ -0.56
HDDC3-204ENST00000559834 WNK4Q96J92 1243 aa11.58□□□□□ -0.56
HDDC3-204ENST00000559834 SERPINA10Q9UK55 444 aa11.58□□□□□ -0.56
HDDC3-204ENST00000559834 TTF2Q9UNY4 1162 aaKnown RBP11.58□□□□□ -0.56
HDDC3-204ENST00000559834 FZD1Q9UP38 647 aa11.58□□□□□ -0.56
HDDC3-204ENST00000559834 TNNI2P48788 182 aa11.57□□□□□ -0.56
HDDC3-204ENST00000559834 CLMNQ96JQ2 1002 aa11.57□□□□□ -0.56
HDDC3-204ENST00000559834 FAM84BQ96KN1 310 aaPredicted RBP11.57□□□□□ -0.56
HDDC3-204ENST00000559834 R3HDMLQ9H3Y0 253 aa11.57□□□□□ -0.56
HDDC3-204ENST00000559834 PCDH10Q9P2E7 1040 aa11.57□□□□□ -0.56
HDDC3-204ENST00000559834 ZNF70Q9UC06 446 aaPredicted RBP11.57□□□□□ -0.56
HDDC3-204ENST00000559834 JAG2Q9Y219 1238 aa11.57□□□□□ -0.56
HDDC3-204ENST00000559834 PCDHAC2Q9Y5I4 1007 aa11.57□□□□□ -0.56
HDDC3-204ENST00000559834 MROH5Q6ZUA9 1318 aa11.57□□□□□ -0.56
HDDC3-204ENST00000559834 ZEB1P37275 1124 aaPredicted RBP11.56□□□□□ -0.56
HDDC3-204ENST00000559834 GYG1P46976 350 aa11.56□□□□□ -0.56
HDDC3-204ENST00000559834 CAVIN4Q5BKX8 364 aa11.56□□□□□ -0.56
HDDC3-204ENST00000559834 PRPF38BQ5VTL8 546 aaKnown RBP11.56□□□□□ -0.56
HDDC3-204ENST00000559834 INTS3Q68E01 1043 aaKnown RBP11.56□□□□□ -0.56
HDDC3-204ENST00000559834 ERO1AQ96HE7 468 aa11.56□□□□□ -0.56
HDDC3-204ENST00000559834 SPINK5Q9NQ38 1064 aaPredicted RBP11.56□□□□□ -0.56
HDDC3-204ENST00000559834 TRIM17Q9Y577 477 aa11.56□□□□□ -0.56
HDDC3-204ENST00000559834 PDE4DIPQ5VU43 2346 aa11.55□□□□□ -0.56
HDDC3-204ENST00000559834 FRAT2O75474 233 aaPredicted RBP11.55□□□□□ -0.56
HDDC3-204ENST00000559834 ARHGEF6Q15052 776 aa11.55□□□□□ -0.56
HDDC3-204ENST00000559834 SPDYE2Q495Y8 402 aa11.55□□□□□ -0.56
HDDC3-204ENST00000559834 DZIP1LQ8IYY4 767 aaKnown RBP11.55□□□□□ -0.56
HDDC3-204ENST00000559834 FAM9BQ8IZU0 186 aa11.55□□□□□ -0.56
HDDC3-204ENST00000559834 TBC1D22AQ8WUA7 517 aa11.55□□□□□ -0.56
HDDC3-204ENST00000559834 SUCLG2Q96I99 432 aa11.55□□□□□ -0.56
HDDC3-204ENST00000559834 PUS3Q9BZE2 481 aaKnown RBP11.55□□□□□ -0.56
HDDC3-204ENST00000559834 TDRD3Q9H7E2 651 aaKnown RBP11.55□□□□□ -0.56
HDDC3-204ENST00000559834 RIPOR2Q9Y4F9 1068 aa11.55□□□□□ -0.56
HDDC3-204ENST00000559834 TESPA1A2RU30 521 aaPredicted RBP11.54□□□□□ -0.56
HDDC3-204ENST00000559834 IGF2BP3O00425 579 aaKnown RBP eCLIP11.54□□□□□ -0.56
HDDC3-204ENST00000559834 CRKP46108 304 aa11.54□□□□□ -0.56
HDDC3-204ENST00000559834 MAP3K9P80192 1104 aa11.54□□□□□ -0.56
HDDC3-204ENST00000559834 HDLBPQ00341 1268 aaKnown RBP11.54□□□□□ -0.56
HDDC3-204ENST00000559834 OTOP1Q7RTM1 612 aa11.54□□□□□ -0.56
HDDC3-204ENST00000559834 FBXO33Q7Z6M2 555 aa11.54□□□□□ -0.56
HDDC3-204ENST00000559834 MRIQ9BWK5 157 aa11.54□□□□□ -0.56
HDDC3-204ENST00000559834 UTYO14607 1347 aa11.54□□□□□ -0.56
HDDC3-204ENST00000559834 ZNF646O15015 1829 aaPredicted RBP11.53□□□□□ -0.56
HDDC3-204ENST00000559834 ZNF316A6NFI3 1004 aaPredicted RBP11.53□□□□□ -0.56
HDDC3-204ENST00000559834 TCP10L2B9ZVM9 353 aa11.53□□□□□ -0.56
HDDC3-204ENST00000559834 WDHD1O75717 1129 aaPredicted RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms