RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.42□□□□□ -0.9
VPS13C-208ENST00000559119 CLEC10AQ8IUN9 316 aa9.42□□□□□ -0.9
VPS13C-208ENST00000559119 ASAP3Q8TDY4 903 aa9.42□□□□□ -0.9
VPS13C-208ENST00000559119 FOXD3Q9UJU5 478 aaPredicted RBP9.42□□□□□ -0.9
VPS13C-208ENST00000559119 PREPP48147 710 aa9.41□□□□□ -0.9
VPS13C-208ENST00000559119 HGSNATQ68CP4 663 aa9.41□□□□□ -0.9
VPS13C-208ENST00000559119 DBNDD2Q9BQY9 259 aa9.41□□□□□ -0.9
VPS13C-208ENST00000559119 AMOTL2Q9Y2J4 779 aa9.41□□□□□ -0.9
VPS13C-208ENST00000559119 SOX1O00570 391 aaPredicted RBP9.4□□□□□ -0.9
VPS13C-208ENST00000559119 GAS2O43903 313 aaKnown RBP9.4□□□□□ -0.9
VPS13C-208ENST00000559119 GRIK1P39086 918 aa9.4□□□□□ -0.9
VPS13C-208ENST00000559119 BEND4Q6ZU67 534 aa9.4□□□□□ -0.9
VPS13C-208ENST00000559119 ZDHHC13Q8IUH4 622 aa9.4□□□□□ -0.9
VPS13C-208ENST00000559119 FAM83CQ9BQN1 747 aa9.4□□□□□ -0.9
VPS13C-208ENST00000559119 USP26Q9BXU7 913 aa9.4□□□□□ -0.9
VPS13C-208ENST00000559119 ANO2Q9NQ90 1003 aa9.4□□□□□ -0.9
VPS13C-208ENST00000559119 HIF3AQ9Y2N7 669 aa9.4□□□□□ -0.9
VPS13C-208ENST00000559119 CARNS1A5YM72 827 aa9.39□□□□□ -0.91
VPS13C-208ENST00000559119 FZD6O60353 706 aa9.39□□□□□ -0.91
VPS13C-208ENST00000559119 PHLDB3Q6NSJ2 640 aa9.39□□□□□ -0.91
VPS13C-208ENST00000559119 VN1R5Q7Z5H4 357 aa9.39□□□□□ -0.91
VPS13C-208ENST00000559119 C1orf115Q9H7X2 142 aa9.39□□□□□ -0.91
VPS13C-208ENST00000559119 MEGF11A6BM72 1044 aa9.38□□□□□ -0.91
VPS13C-208ENST00000559119 ZNF211Q13398 564 aaPredicted RBP9.38□□□□□ -0.91
VPS13C-208ENST00000559119 NUTM2GQ5VZR2 741 aa9.38□□□□□ -0.91
VPS13C-208ENST00000559119 INTS5Q6P9B9 1019 aaKnown RBP9.38□□□□□ -0.91
VPS13C-208ENST00000559119 BHLHE41Q9C0J9 482 aaPredicted RBP9.38□□□□□ -0.91
VPS13C-208ENST00000559119 CCDC87Q9NVE4 849 aa9.38□□□□□ -0.91
VPS13C-208ENST00000559119 MED26O95402 600 aa9.37□□□□□ -0.91
VPS13C-208ENST00000559119 GJD3Q8N144 294 aa9.37□□□□□ -0.91
VPS13C-208ENST00000559119 C12orf50Q8NA57 414 aaPredicted RBP9.37□□□□□ -0.91
VPS13C-208ENST00000559119 KRTAP9-2Q9BYQ4 174 aa9.37□□□□□ -0.91
VPS13C-208ENST00000559119 ZFYVE28Q9HCC9 887 aa9.37□□□□□ -0.91
VPS13C-208ENST00000559119 LATS2Q9NRM7 1088 aa9.37□□□□□ -0.91
VPS13C-208ENST00000559119 KIAA1324LA8MWY0 1029 aaPredicted RBP9.36□□□□□ -0.91
VPS13C-208ENST00000559119 SOX17Q9H6I2 414 aaPredicted RBP9.36□□□□□ -0.91
VPS13C-208ENST00000559119 CYP4F12Q9HCS2 524 aa9.36□□□□□ -0.91
VPS13C-208ENST00000559119 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.35□□□□□ -0.91
VPS13C-208ENST00000559119 RXRBP28702 533 aa9.35□□□□□ -0.91
VPS13C-208ENST00000559119 PEAR1Q5VY43 1037 aaPredicted RBP9.35□□□□□ -0.91
VPS13C-208ENST00000559119 SHKBP1Q8TBC3 707 aa9.35□□□□□ -0.91
VPS13C-208ENST00000559119 EIF4EBP3O60516 100 aaPredicted RBP9.34□□□□□ -0.91
VPS13C-208ENST00000559119 POLR3DP05423 398 aaPredicted RBP9.34□□□□□ -0.91
VPS13C-208ENST00000559119 ESRRAP11474 423 aaPredicted RBP9.34□□□□□ -0.91
VPS13C-208ENST00000559119 MAP4P27816 1152 aaKnown RBP9.34□□□□□ -0.91
VPS13C-208ENST00000559119 GSTM4Q03013 218 aa9.34□□□□□ -0.91
VPS13C-208ENST00000559119 B4GALNT3Q6L9W6 998 aa9.34□□□□□ -0.91
VPS13C-208ENST00000559119 SMG8Q8ND04 991 aaKnown RBP9.34□□□□□ -0.91
VPS13C-208ENST00000559119 TMPRSS13Q9BYE2 586 aa9.34□□□□□ -0.91
VPS13C-208ENST00000559119 LOC100289279A0A1B0GTE1 492 aa9.33□□□□□ -0.92
VPS13C-208ENST00000559119 PRR19A6NJB7 356 aa9.33□□□□□ -0.92
VPS13C-208ENST00000559119 SGO2Q562F6 1265 aa9.33□□□□□ -0.92
VPS13C-208ENST00000559119 MCTP1Q6DN14 999 aa9.33□□□□□ -0.92
VPS13C-208ENST00000559119 GIMAP7Q8NHV1 300 aa9.33□□□□□ -0.92
VPS13C-208ENST00000559119 METTL12A8MUP2 240 aa9.32□□□□□ -0.92
VPS13C-208ENST00000559119 WDR64B1ANS9 1081 aa9.32□□□□□ -0.92
VPS13C-208ENST00000559119 EXOSC6Q5RKV6 272 aaKnown RBP9.32□□□□□ -0.92
VPS13C-208ENST00000559119 C14orf37Q86TY3 774 aa9.32□□□□□ -0.92
VPS13C-208ENST00000559119 MFSD14AQ96MC6 490 aa9.32□□□□□ -0.92
VPS13C-208ENST00000559119 SUGCTQ9HAC7 445 aa9.32□□□□□ -0.92
VPS13C-208ENST00000559119 EGFL7Q9UHF1 273 aa9.32□□□□□ -0.92
VPS13C-208ENST00000559119 BRPF3Q9ULD4 1205 aa9.32□□□□□ -0.92
VPS13C-208ENST00000559119 USTQ9Y2C2 406 aa9.32□□□□□ -0.92
VPS13C-208ENST00000559119 KRTAP9-6A0A140TA67 174 aa9.31□□□□□ -0.92
VPS13C-208ENST00000559119 IRAK1P51617 712 aa9.31□□□□□ -0.92
VPS13C-208ENST00000559119 USP11P51784 963 aa9.31□□□□□ -0.92
VPS13C-208ENST00000559119 GP2P55259 537 aaKnown RBP9.31□□□□□ -0.92
VPS13C-208ENST00000559119 H3BRB1 525 aa9.3□□□□□ -0.92
VPS13C-208ENST00000559119 ICMTO60725 284 aa9.3□□□□□ -0.92
VPS13C-208ENST00000559119 TIAF1O95411 115 aa9.3□□□□□ -0.92
VPS13C-208ENST00000559119 NEFLP07196 543 aa9.3□□□□□ -0.92
VPS13C-208ENST00000559119 SPINK2P20155 84 aa9.3□□□□□ -0.92
VPS13C-208ENST00000559119 GLYCTKQ8IVS8 523 aa9.3□□□□□ -0.92
VPS13C-208ENST00000559119 TUT1Q9H6E5 874 aaKnown RBP9.3□□□□□ -0.92
VPS13C-208ENST00000559119 ATG3Q9NT62 314 aa9.3□□□□□ -0.92
VPS13C-208ENST00000559119 COL17A1Q9UMD9 1497 aaPredicted RBP9.29□□□□□ -0.92
VPS13C-208ENST00000559119 A0A096LPE4 126 aa9.29□□□□□ -0.92
VPS13C-208ENST00000559119 A0A1W2PP55 124 aa9.29□□□□□ -0.92
VPS13C-208ENST00000559119 A0A1W2PPZ6 126 aa9.29□□□□□ -0.92
VPS13C-208ENST00000559119 DLGAP3O95886 979 aa9.29□□□□□ -0.92
VPS13C-208ENST00000559119 NFKBIBQ15653 356 aa9.29□□□□□ -0.92
VPS13C-208ENST00000559119 DTX1Q86Y01 620 aa9.29□□□□□ -0.92
VPS13C-208ENST00000559119 GALNT12Q8IXK2 581 aa9.29□□□□□ -0.92
VPS13C-208ENST00000559119 FBXL6Q8N531 539 aa9.29□□□□□ -0.92
VPS13C-208ENST00000559119 CLEC4MQ9H2X3 399 aaPredicted RBP9.29□□□□□ -0.92
VPS13C-208ENST00000559119 LIN7BQ9HAP6 207 aa9.29□□□□□ -0.92
VPS13C-208ENST00000559119 FAM95CA0A1B0GW59 222 aa9.28□□□□□ -0.92
VPS13C-208ENST00000559119 DRD2P14416 443 aa9.28□□□□□ -0.92
VPS13C-208ENST00000559119 PCDH1Q08174 1060 aa9.28□□□□□ -0.92
VPS13C-208ENST00000559119 PAOXQ6QHF9 649 aa9.28□□□□□ -0.92
VPS13C-208ENST00000559119 CCNJLQ8IV13 435 aa9.28□□□□□ -0.92
VPS13C-208ENST00000559119 OAS3Q9Y6K5 1087 aaKnown RBP9.28□□□□□ -0.92
VPS13C-208ENST00000559119 NDUFB5O43674 189 aa9.27□□□□□ -0.93
VPS13C-208ENST00000559119 YIPF2Q9BWQ6 316 aa9.27□□□□□ -0.93
VPS13C-208ENST00000559119 OSBPL1AQ9BXW6 950 aa9.27□□□□□ -0.93
VPS13C-208ENST00000559119 PIM2Q9P1W9 311 aa9.27□□□□□ -0.93
VPS13C-208ENST00000559119 LEMD3Q9Y2U8 911 aa9.27□□□□□ -0.93
VPS13C-208ENST00000559119 PAX4O43316 350 aa9.26□□□□□ -0.93
VPS13C-208ENST00000559119 WNT11O96014 354 aa9.26□□□□□ -0.93
VPS13C-208ENST00000559119 CYP11A1P05108 521 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms