RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 PHACTR2O75167 634 aa5.77□□□□□ -1.49
VPS13C-205ENST00000558088 SPINK2P20155 84 aa5.77□□□□□ -1.49
VPS13C-205ENST00000558088 USP5P45974 858 aa5.77□□□□□ -1.49
VPS13C-205ENST00000558088 EIF1AXP47813 144 aaKnown RBP5.77□□□□□ -1.49
VPS13C-205ENST00000558088 EHHADHQ08426 723 aa5.77□□□□□ -1.49
VPS13C-205ENST00000558088 DTX1Q86Y01 620 aa5.77□□□□□ -1.49
VPS13C-205ENST00000558088 TMEM102Q8N9M5 508 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-205ENST00000558088 C12orf50Q8NA57 414 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-205ENST00000558088 OSMRQ99650 979 aa5.77□□□□□ -1.49
VPS13C-205ENST00000558088 USP26Q9BXU7 913 aa5.77□□□□□ -1.49
VPS13C-205ENST00000558088 CYP4F12Q9HCS2 524 aa5.77□□□□□ -1.49
VPS13C-205ENST00000558088 SOX13Q9UN79 622 aa5.77□□□□□ -1.49
VPS13C-205ENST00000558088 ANGEL1Q9UNK9 670 aaKnown RBP5.77□□□□□ -1.49
VPS13C-205ENST00000558088 MEGF11A6BM72 1044 aa5.76□□□□□ -1.49
VPS13C-205ENST00000558088 ACPPP15309 386 aa5.76□□□□□ -1.49
VPS13C-205ENST00000558088 TAL1P17542 331 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-205ENST00000558088 MPSTP25325 297 aa5.76□□□□□ -1.49
VPS13C-205ENST00000558088 MAP4P27816 1152 aaKnown RBP5.76□□□□□ -1.49
VPS13C-205ENST00000558088 SNX29Q8TEQ0 813 aa5.76□□□□□ -1.49
VPS13C-205ENST00000558088 GTF3C2Q8WUA4 911 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-205ENST00000558088 MFSD14AQ96MC6 490 aa5.76□□□□□ -1.49
VPS13C-205ENST00000558088 YIPF2Q9BWQ6 316 aa5.76□□□□□ -1.49
VPS13C-205ENST00000558088 GGNBP2Q9H3C7 697 aa5.76□□□□□ -1.49
VPS13C-205ENST00000558088 PIM2Q9P1W9 311 aa5.76□□□□□ -1.49
VPS13C-205ENST00000558088 LEMD3Q9Y2U8 911 aa5.76□□□□□ -1.49
VPS13C-205ENST00000558088 PRR19A6NJB7 356 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 NFKBIEO00221 500 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 TRPA1O75762 1119 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 USP11P51784 963 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 CPSF6Q16630 551 aaKnown RBP eCLIP5.75□□□□□ -1.49
VPS13C-205ENST00000558088 PAOXQ6QHF9 649 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 ASAP3Q8TDY4 903 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 NXPE3Q969Y0 559 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 HHIPQ96QV1 700 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 ZKSCAN3Q9BRR0 538 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 OSBPL1AQ9BXW6 950 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 KRTAP9-9Q9BYP9 154 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 KRTAP9-4Q9BYQ2 154 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 SLAIN2Q9P270 581 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 RNF114Q9Y508 228 aa5.75□□□□□ -1.49
VPS13C-205ENST00000558088 KRTAP4-8A0A0G2JLE6 195 aa5.74□□□□□ -1.49
VPS13C-205ENST00000558088 A6NHS1 94 aa5.74□□□□□ -1.49
VPS13C-205ENST00000558088 FAM13AO94988 1023 aa5.74□□□□□ -1.49
VPS13C-205ENST00000558088 YBX3P16989 372 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS13C-205ENST00000558088 FBXL6Q8N531 539 aa5.74□□□□□ -1.49
VPS13C-205ENST00000558088 FMNL2Q96PY5 1086 aa5.74□□□□□ -1.49
VPS13C-205ENST00000558088 METTL22Q9BUU2 404 aaPredicted RBP5.74□□□□□ -1.49
VPS13C-205ENST00000558088 CHRDQ9H2X0 955 aa5.74□□□□□ -1.49
VPS13C-205ENST00000558088 SOX17Q9H6I2 414 aaPredicted RBP5.74□□□□□ -1.49
VPS13C-205ENST00000558088 SUGCTQ9HAC7 445 aa5.74□□□□□ -1.49
VPS13C-205ENST00000558088 POLIQ9UNA4 740 aa5.74□□□□□ -1.49
VPS13C-205ENST00000558088 FAM95CA0A1B0GW59 222 aa5.73□□□□□ -1.49
VPS13C-205ENST00000558088 SOX1O00570 391 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-205ENST00000558088 EREGO14944 169 aa5.73□□□□□ -1.49
VPS13C-205ENST00000558088 TNFRSF21O75509 655 aa5.73□□□□□ -1.49
VPS13C-205ENST00000558088 SGO2Q562F6 1265 aa5.73□□□□□ -1.49
VPS13C-205ENST00000558088 HP1BP3Q5SSJ5 553 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-205ENST00000558088 SMG8Q8ND04 991 aaKnown RBP5.73□□□□□ -1.49
VPS13C-205ENST00000558088 TMPRSS13Q9BYE2 586 aa5.73□□□□□ -1.49
VPS13C-205ENST00000558088 AMOTL2Q9Y2J4 779 aa5.73□□□□□ -1.49
VPS13C-205ENST00000558088 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-205ENST00000558088 LOC100289279A0A1B0GTE1 492 aa5.72□□□□□ -1.49
VPS13C-205ENST00000558088 GSTM4Q03013 218 aa5.72□□□□□ -1.49
VPS13C-205ENST00000558088 NFKBIBQ15653 356 aa5.72□□□□□ -1.49
VPS13C-205ENST00000558088 VN1R5Q7Z5H4 357 aa5.72□□□□□ -1.49
VPS13C-205ENST00000558088 BHLHE41Q9C0J9 482 aaPredicted RBP5.72□□□□□ -1.49
VPS13C-205ENST00000558088 FOSL1P15407 271 aa5.71□□□□□ -1.5
VPS13C-205ENST00000558088 SF3B2Q13435 895 aaKnown RBP5.71□□□□□ -1.5
VPS13C-205ENST00000558088 MTMR3Q13615 1198 aa5.71□□□□□ -1.5
VPS13C-205ENST00000558088 EXOSC6Q5RKV6 272 aaKnown RBP5.71□□□□□ -1.5
VPS13C-205ENST00000558088 HGSNATQ68CP4 663 aa5.71□□□□□ -1.5
VPS13C-205ENST00000558088 DDX54Q8TDD1 881 aaKnown RBP5.71□□□□□ -1.5
VPS13C-205ENST00000558088 ZFYVE1Q9HBF4 777 aa5.71□□□□□ -1.5
VPS13C-205ENST00000558088 ADAMTS4O75173 837 aa5.7□□□□□ -1.5
VPS13C-205ENST00000558088 TIAF1O95411 115 aa5.7□□□□□ -1.5
VPS13C-205ENST00000558088 ESRRAP11474 423 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-205ENST00000558088 VSIG10LQ86VR7 867 aa5.7□□□□□ -1.5
VPS13C-205ENST00000558088 KRTAP19-1Q8IUB9 90 aa5.7□□□□□ -1.5
VPS13C-205ENST00000558088 FBXL18Q96ME1 805 aa5.7□□□□□ -1.5
VPS13C-205ENST00000558088 FOXD3Q9UJU5 478 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-205ENST00000558088 PPP1R15AO75807 674 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-205ENST00000558088 CYP11A1P05108 521 aa5.69□□□□□ -1.5
VPS13C-205ENST00000558088 F13BP05160 661 aa5.69□□□□□ -1.5
VPS13C-205ENST00000558088 SSFA2P28290 1259 aa5.69□□□□□ -1.5
VPS13C-205ENST00000558088 HOXA10P31260 410 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-205ENST00000558088 FBLIM1Q8WUP2 373 aa5.69□□□□□ -1.5
VPS13C-205ENST00000558088 TBC1D32Q96NH3 1257 aa5.69□□□□□ -1.5
VPS13C-205ENST00000558088 CYP26A1O43174 497 aa5.68□□□□□ -1.5
VPS13C-205ENST00000558088 ABL1P00519 1130 aa5.68□□□□□ -1.5
VPS13C-205ENST00000558088 DRD2P14416 443 aa5.68□□□□□ -1.5
VPS13C-205ENST00000558088 NPR3P17342 541 aa5.68□□□□□ -1.5
VPS13C-205ENST00000558088 CYP27A1Q02318 531 aa5.68□□□□□ -1.5
VPS13C-205ENST00000558088 FKBP4Q02790 459 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS13C-205ENST00000558088 SOX4Q06945 474 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-205ENST00000558088 MAP7Q14244 749 aa5.68□□□□□ -1.5
VPS13C-205ENST00000558088 DUSP27Q5VZP5 1158 aa5.68□□□□□ -1.5
VPS13C-205ENST00000558088 ADGRE2Q9UHX3 823 aa5.68□□□□□ -1.5
VPS13C-205ENST00000558088 NEFLP07196 543 aa5.67□□□□□ -1.5
VPS13C-205ENST00000558088 PCDH1Q08174 1060 aa5.67□□□□□ -1.5
VPS13C-205ENST00000558088 MSMPQ1L6U9 139 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms