RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ALS2CR12	Q96Q35	445 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	FTO	Q9C0B1	505 aa	Known RBP eCLIP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	ST7	Q9NRC1	585 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	MACROD2	A1Z1Q3	448 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	SSB	P05455	408 aa	Known RBP eCLIP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	RASEF	Q8IZ41	740 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZKSCAN3	Q9BRR0	538 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	AMOTL2	Q9Y2J4	779 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	NCOA3	Q9Y6Q9	1424 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	TTC21A	Q8NDW8	1320 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	RANBP6	O60518	1105 aa	Known RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	NF2	P35240	595 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	MTIF2	P46199	727 aa	Known RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	TRMT44	Q8IYL2	757 aa	Known RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	RGS22	Q8NE09	1264 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	ANKRD24	Q8TF21	1146 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZSWIM6	Q9HCJ5	1215 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	TLR7	Q9NYK1	1049 aa	Known RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	KIF20B	Q96Q89	1820 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	N4BP3	O15049	544 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	CKAP4	Q07065	602 aa	Known RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	TNNI3K	Q59H18	835 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	EDC3	Q96F86	508 aa	Known RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	PLIN2	Q99541	437 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	DESI2	Q9BSY9	194 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	CWC25	Q9NXE8	425 aa	Predicted RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	FPGT-TNNI3K	V9GXZ4	949 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	NPHP3	Q7Z494	1330 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	PIP4K2B	P78356	416 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	SCRN1	Q12765	414 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	SMC1A	Q14683	1233 aa	Known RBP	5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	AMOT	Q4VCS5	1084 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	TTC19	Q6DKK2	380 aa	Predicted RBP	5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	DHX32	Q7L7V1	743 aa	Known RBP	5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	SCLT1	Q96NL6	688 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	CTAGE1	Q96RT6	745 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	GOLGA6L7	A0A1B0GV03	622 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	ATF3	P18847	181 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	DDIT3	P35638	169 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	NDUFA8	P51970	172 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	GYS2	P54840	703 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	NAA30	Q147X3	362 aa	Predicted RBP	5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	CACNA2D4	Q7Z3S7	1137 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	GOLPH3L	Q9H4A5	285 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	TCEAL9	Q9UHQ7	104 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	FLT4	P35916	1363 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	MAP3K19	Q56UN5	1328 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZNF202	O95125	648 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	MYL5	Q02045	173 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	IFFO1	Q0D2I5	559 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	ANO1	Q5XXA6	986 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	TOM1L2	Q6ZVM7	507 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	TTC6	Q86TZ1	520 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	FAM76A	Q8TAV0	307 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	TSG101	Q99816	390 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	HELLS	Q9NRZ9	838 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	TULP4	Q9NRJ4	1543 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	SYNRG	Q9UMZ2	1314 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	USO1	O60763	962 aa	Known RBP	5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	ATP2B2	Q01814	1243 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	TDRD12	Q587J7	1177 aa	Known RBP	5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	MFSD6	Q6ZSS7	791 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	TRIM47	Q96LD4	638 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	PUS7	Q96PZ0	661 aa	Known RBP	5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	NAPG	Q99747	312 aa	Predicted RBP	5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	LGR6	Q9HBX8	967 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	GNL3L	Q9NVN8	582 aa	Known RBP	5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	PPP2R2C	Q9Y2T4	447 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	KIAA0232	Q92628	1395 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	MED14	O60244	1454 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZBTB43	O43298	467 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	TUBB4A	P04350	444 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	GPT	P24298	496 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	MCM7	P33993	719 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	KRT2	P35908	639 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	STAT6	P42226	847 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	USP5	P45974	858 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZFYVE27	Q5T4F4	411 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	SOGA3	Q5TF21	947 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	KANK3	Q6NY19	840 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	FBXO38	Q6PIJ6	1188 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	COPS6	Q7L5N1	327 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZNF710	Q8N1W2	664 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	KIAA1524	Q8TCG1	905 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	IFT81	Q8WYA0	676 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	GDAP1L1	Q96MZ0	367 aa		5.68	□□□□□ -1.5
SYNE2-223	ENST00000557005	ALDH1L1	O75891	902 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	CTDSPL2	Q05D32	466 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	AKAP4	Q5JQC9	854 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	MSL1	Q68DK7	614 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	PLA2G4D	Q86XP0	818 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	DHX40	Q8IX18	779 aa	Known RBP	5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	IGSF22	Q8N9C0	903 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	TDRD7	Q8NHU6	1098 aa	Known RBP	5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	CACTIN	Q8WUQ7	758 aa	Known RBP	5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	MPHOSPH8	Q99549	860 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	MYL10	Q9BUA6	226 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005		M0R2C6	588 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	RNMT	O43148	476 aa	Known RBP	5.67	□□□□□ -1.5

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