RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ADARB2Q9NS39 739 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-212ENST00000556767 PCDHB15Q9Y5E8 787 aa14.11□□□□□ -0.15
CCDC88C-212ENST00000556767 FPGT-TNNI3KV9GXZ4 949 aa14.11□□□□□ -0.15
CCDC88C-212ENST00000556767 PSME4Q14997 1843 aa14.11□□□□□ -0.15
CCDC88C-212ENST00000556767 ZNF609O15014 1411 aa14.1□□□□□ -0.15
CCDC88C-212ENST00000556767 F8W031 263 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-212ENST00000556767 PHKA1P46020 1223 aa14.1□□□□□ -0.15
CCDC88C-212ENST00000556767 TBC1D10BQ4KMP7 808 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-212ENST00000556767 CCDC102BQ68D86 513 aa14.1□□□□□ -0.15
CCDC88C-212ENST00000556767 SAMD7Q7Z3H4 446 aa14.1□□□□□ -0.15
CCDC88C-212ENST00000556767 KIAA0825Q8IV33 1275 aa14.1□□□□□ -0.15
CCDC88C-212ENST00000556767 OGFOD1Q8N543 542 aa14.1□□□□□ -0.15
CCDC88C-212ENST00000556767 IL1RAPL2Q9NP60 686 aa14.1□□□□□ -0.15
CCDC88C-212ENST00000556767 RAB11FIP3O75154 756 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 POTEIP0CG38 1075 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 POTEJP0CG39 1038 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 MFSD14BQ5SR56 506 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 USP50Q70EL3 339 aaPredicted RBP14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 LDHDQ86WU2 507 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 SMC1BQ8NDV3 1235 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 RBM46Q8TBY0 533 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 RHPN1Q8TCX5 695 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 KIF1BPQ96EK5 621 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 CCDC8Q9H0W5 538 aaPredicted RBP14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 GPR108Q9NPR9 543 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 HDAC9Q9UKV0 1011 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 FAM205AQ6ZU69 1335 aa14.09□□□□□ -0.15
CCDC88C-212ENST00000556767 KIF4BQ2VIQ3 1234 aa14.08□□□□□ -0.16
CCDC88C-212ENST00000556767 AACSQ86V21 672 aa14.08□□□□□ -0.16
CCDC88C-212ENST00000556767 CERS5Q8N5B7 392 aa14.08□□□□□ -0.16
CCDC88C-212ENST00000556767 TRPM4Q8TD43 1214 aa14.08□□□□□ -0.16
CCDC88C-212ENST00000556767 GMLQ99445 158 aa14.08□□□□□ -0.16
CCDC88C-212ENST00000556767 DBNDD2Q9BQY9 259 aa14.08□□□□□ -0.16
CCDC88C-212ENST00000556767 ARAP2Q8WZ64 1704 aa14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 C1QTNF8P60827 252 aa14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 AAMPQ13685 434 aa14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 CCDC158Q5M9N0 1113 aa14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 TTC39AQ5SRH9 613 aa14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 CHADLQ6NUI6 762 aa14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 CLASRPQ8N2M8 674 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 TBC1D22AQ8WUA7 517 aa14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 EAF2Q96CJ1 260 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 DENND2AQ9ULE3 1009 aa14.07□□□□□ -0.16
CCDC88C-212ENST00000556767 MYH13Q9UKX3 1938 aa14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 SEMA3EO15041 775 aa14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 RBM5P52756 815 aaKnown RBP eCLIP14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 ZNF280AP59817 542 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 FKBP1AP62942 108 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 MAP1SQ66K74 1059 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 WDR66Q8TBY9 1149 aa14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 DCTPP1Q9H773 170 aa14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 MYOZ2Q9NPC6 264 aa14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 TTF2Q9UNY4 1162 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-212ENST00000556767 EGFRP00533 1210 aa14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 CENPBP07199 599 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 IFIT2P09913 472 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 UQCRFS1P1P0C7P4 283 aa14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 HIRAP54198 1017 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 FSTL1Q12841 308 aa14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 RASGRF1Q13972 1273 aa14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 LRRCC1Q9C099 1032 aa14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 TLR7Q9NYK1 1049 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 DBNLQ9UJU6 430 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 ZNF646O15015 1829 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-212ENST00000556767 SMARCA5O60264 1052 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-212ENST00000556767 DLGAP5Q15398 846 aa14.04□□□□□ -0.16
CCDC88C-212ENST00000556767 ZBTB47Q9UFB7 747 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-212ENST00000556767 ABCF2Q9UG63 623 aa14.04□□□□□ -0.16
CCDC88C-212ENST00000556767 COL1A1P02452 1464 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-212ENST00000556767 MMP14P50281 582 aa14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 SCARF1Q14162 830 aa14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 GRIK5Q16478 980 aa14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 CFAP100Q494V2 611 aa14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 CNTROBQ8N137 903 aa14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 SPATA5Q8NB90 893 aa14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 ZC3H15Q8WU90 426 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 DCPSQ96C86 337 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 RWDD1Q9H446 243 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 SNRKQ9NRH2 765 aa14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 HMG20BQ9P0W2 317 aa14.03□□□□□ -0.16
CCDC88C-212ENST00000556767 ASTN2O75129 1339 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-212ENST00000556767 ARID4AP29374 1257 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-212ENST00000556767 HDAC1Q13547 482 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-212ENST00000556767 NBPF9Q3BBW0 867 aa14.02□□□□□ -0.17
CCDC88C-212ENST00000556767 PI16Q6UXB8 463 aa14.02□□□□□ -0.17
CCDC88C-212ENST00000556767 ZGPATQ8N5A5 531 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-212ENST00000556767 GGA3Q9NZ52 723 aa14.02□□□□□ -0.17
CCDC88C-212ENST00000556767 ADAMTSL1Q8N6G6 1762 aa14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 MAST3O60307 1309 aa14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 WNT10BO00744 389 aa14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 LDHBP07195 334 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 MCAMP43121 646 aa14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 CRKP46108 304 aa14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 ANGEL2Q5VTE6 544 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 GLIS2Q9BZE0 524 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 SUGT1Q9Y2Z0 365 aa14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 PCDHAC2Q9Y5I4 1007 aa14.01□□□□□ -0.17
CCDC88C-212ENST00000556767 PDS5AQ29RF7 1337 aaKnown RBP14□□□□□ -0.17
CCDC88C-212ENST00000556767 SALL1Q9NSC2 1324 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 MYO1BO43795 1136 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms